ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 442 |
| AccB1I | GGYRCC | 2 cut(s) | 262, 356 |
| AccBSI | CCGCTC | 2 cut(s) | 154, 627 |
| AccIII | TCCGGA | 2 cut(s) | 14, 396 |
| AciI | CCGC | 5 cut(s) | 28, 126, 152, 300, 627 |
| AclI | AACGTT | 1 cut(s) | 216 |
| AclWI | GGATC | 2 cut(s) | 6, 543 |
| AcoI | YGGCCR | 2 cut(s) | 339, 591 |
| AcsI | RAATTY | 2 cut(s) | 468, 478 |
| AcyI | GRCGYC | 1 cut(s) | 357 |
| AfaI | GTAC | 1 cut(s) | 177 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 272, 396 |
| AgsI | TTSAA | 4 cut(s) | 117, 467, 554, 571 |
| AleI | CACNNNNGTG | 1 cut(s) | 619 |
| AluBI | AGCT | 4 cut(s) | 59, 380, 529, 653 |
| AluI | AGCT | 4 cut(s) | 59, 380, 529, 653 |
| Alw21I | GWGCWC | 1 cut(s) | 382 |
| Alw26I | GTCTC | 2 cut(s) | 450, 494 |
| AlwI | GGATC | 2 cut(s) | 6, 543 |
| Ama87I | CYCGRG | 1 cut(s) | 38 |
| Aor13HI | TCCGGA | 2 cut(s) | 14, 396 |
| AoxI | GGCC | 2 cut(s) | 339, 591 |
| ApeKI | GCWGC | 1 cut(s) | 193 |
| ApoI | RAATTY | 2 cut(s) | 468, 478 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 479 |
| AspLEI | GCGC | 1 cut(s) | 359 |
| AsuHPI | GGTGA | 3 cut(s) | 59, 436, 451 |
| AvaI | CYCGRG | 1 cut(s) | 38 |
| BanI | GGYRCC | 2 cut(s) | 262, 356 |
| BanII | GRGCYC | 1 cut(s) | 382 |
| BbsI | GAAGAC | 2 cut(s) | 177, 447 |
| Bbv12I | GWGCWC | 1 cut(s) | 382 |
| BbvI | GCAGC | 1 cut(s) | 180 |
| BccI | CCATC | 3 cut(s) | 78, 280, 490 |
| BceAI | ACGGC | 1 cut(s) | 354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 212, 246 |
| BcoDI | GTCTC | 2 cut(s) | 450, 494 |
| BfoI | RGCGCY | 1 cut(s) | 360 |
| BglII | AGATCT | 1 cut(s) | 546 |
| BisI | GCNGC | 2 cut(s) | 194, 628 |
| BlsI | GCNGC | 2 cut(s) | 195, 629 |
| BmeT110I | CYCGRG | 1 cut(s) | 38 |
| BmiI | GGNNCC | 2 cut(s) | 264, 358 |
| BoxI | GACNNNNGTC | 1 cut(s) | 581 |
| BpiI | GAAGAC | 2 cut(s) | 177, 447 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 9, 41 |
| BpuEI | CTTGAG | 2 cut(s) | 182, 551 |
| BsaHI | GRCGYC | 1 cut(s) | 357 |
| BsaJI | CCNNGG | 1 cut(s) | 342 |
| BsaWI | WCCGGW | 3 cut(s) | 14, 265, 396 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 491, 521 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 272, 396 |
| BseAI | TCCGGA | 2 cut(s) | 14, 396 |
| BseDI | CCNNGG | 1 cut(s) | 342 |
| BseGI | GGATG | 1 cut(s) | 649 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 272, 396 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BseXI | GCAGC | 1 cut(s) | 180 |
| BseYI | CCCAGC | 1 cut(s) | 55 |
| BshFI | GGCC | 2 cut(s) | 341, 593 |
| BshNI | GGYRCC | 2 cut(s) | 262, 356 |
| BsiHKAI | GWGCWC | 1 cut(s) | 382 |
| BsiHKCI | CYCGRG | 1 cut(s) | 38 |
| BsiSI | CCGG | 5 cut(s) | 15, 266, 297, 397, 524 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 272, 396 |
| BsmAI | GTCTC | 2 cut(s) | 450, 494 |
| BsmBI | CGTCTC | 1 cut(s) | 494 |
| BsnI | GGCC | 2 cut(s) | 341, 593 |
| BsoBI | CYCGRG | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 1 cut(s) | 382 |
| Bsp13I | TCCGGA | 2 cut(s) | 14, 396 |
| Bsp143I | GATC | 3 cut(s) | 11, 535, 546 |
| BspACI | CCGC | 5 cut(s) | 28, 126, 152, 300, 627 |
| BspANI | GGCC | 2 cut(s) | 341, 593 |
| BspEI | TCCGGA | 2 cut(s) | 14, 396 |
| BspLI | GGNNCC | 2 cut(s) | 264, 358 |
| BspPI | GGATC | 2 cut(s) | 6, 543 |
| BspQI | GCTCTTC | 1 cut(s) | 66 |
| BspT107I | GGYRCC | 2 cut(s) | 262, 356 |
| BsrBI | CCGCTC | 2 cut(s) | 154, 627 |
| BssECI | CCNNGG | 1 cut(s) | 342 |
| BssMI | GATC | 3 cut(s) | 11, 535, 546 |
| BssNI | GRCGYC | 1 cut(s) | 357 |
| BssT1I | CCWWGG | 1 cut(s) | 342 |
| Bst4CI | ACNGT | 2 cut(s) | 252, 439 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstACI | GRCGYC | 1 cut(s) | 357 |
| BstC8I | GCNNGC | 1 cut(s) | 595 |
| BstF5I | GGATG | 1 cut(s) | 649 |
| BstH2I | RGCGCY | 1 cut(s) | 360 |
| BstHHI | GCGC | 1 cut(s) | 359 |
| BstKTI | GATC | 3 cut(s) | 14, 538, 549 |
| BstMAI | GTCTC | 2 cut(s) | 450, 494 |
| BstMBI | GATC | 3 cut(s) | 11, 535, 546 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 581 |
| BstV1I | GCAGC | 1 cut(s) | 180 |
| BstV2I | GAAGAC | 2 cut(s) | 177, 447 |
| BstX2I | RGATCY | 2 cut(s) | 11, 546 |
| BstYI | RGATCY | 2 cut(s) | 11, 546 |
| BsuRI | GGCC | 2 cut(s) | 341, 593 |
| BtgZI | GCGATG | 1 cut(s) | 299 |
| BtsCI | GGATG | 1 cut(s) | 649 |
| BtsI | GCAGTG | 1 cut(s) | 614 |
| BtsIMutI | CAGTG | 1 cut(s) | 614 |
| Cac8I | GCNNGC | 1 cut(s) | 595 |
| CfoI | GCGC | 1 cut(s) | 359 |
| CseI | GACGC | 2 cut(s) | 170, 325 |
| Csp6I | GTAC | 1 cut(s) | 176 |
| CviQI | GTAC | 1 cut(s) | 176 |
| DinI | GGCGCC | 1 cut(s) | 358 |
| DpnI | GATC | 3 cut(s) | 13, 537, 548 |
| DpnII | GATC | 3 cut(s) | 11, 535, 546 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 442 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 442 |
| EaeI | YGGCCR | 2 cut(s) | 339, 591 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| EciI | GGCGGA | 3 cut(s) | 17, 115, 315 |
| Ecl136II | GAGCTC | 1 cut(s) | 380 |
| Eco130I | CCWWGG | 1 cut(s) | 342 |
| Eco24I | GRGCYC | 1 cut(s) | 382 |
| Eco53kI | GAGCTC | 1 cut(s) | 380 |
| Eco88I | CYCGRG | 1 cut(s) | 38 |
| EcoICRI | GAGCTC | 1 cut(s) | 380 |
| EcoT14I | CCWWGG | 1 cut(s) | 342 |
| EcoT38I | GRGCYC | 1 cut(s) | 382 |
| EgeI | GGCGCC | 1 cut(s) | 358 |
| EheI | GGCGCC | 1 cut(s) | 358 |
| ErhI | CCWWGG | 1 cut(s) | 342 |
| Esp3I | CGTCTC | 1 cut(s) | 494 |
| FaiI | YATR | 3 cut(s) | 191, 221, 512 |
| FauI | CCCGC | 1 cut(s) | 159 |
| Fnu4HI | GCNGC | 2 cut(s) | 194, 628 |
| FokI | GGATG | 1 cut(s) | 656 |
| FriOI | GRGCYC | 1 cut(s) | 382 |
| Fsp4HI | GCNGC | 2 cut(s) | 194, 628 |
| GlaI | GCGC | 1 cut(s) | 358 |
| GluI | GCNGC | 2 cut(s) | 194, 628 |
| GsaI | CCCAGC | 1 cut(s) | 59 |
| HaeII | RGCGCY | 1 cut(s) | 360 |
| HaeIII | GGCC | 2 cut(s) | 341, 593 |
| HapII | CCGG | 5 cut(s) | 15, 266, 297, 397, 524 |
| HgaI | GACGC | 2 cut(s) | 170, 325 |
| HhaI | GCGC | 1 cut(s) | 359 |
| Hin1I | GRCGYC | 1 cut(s) | 357 |
| Hin6I | GCGC | 1 cut(s) | 357 |
| HinP1I | GCGC | 1 cut(s) | 357 |
| HinfI | GANTC | 3 cut(s) | 43, 402, 515 |
| HpaII | CCGG | 5 cut(s) | 15, 266, 297, 397, 524 |
| HphI | GGTGA | 3 cut(s) | 59, 436, 451 |
| Hpy188I | TCNGA | 3 cut(s) | 315, 407, 474 |
| Hpy188III | TCNNGA | 6 cut(s) | 15, 40, 185, 199, 397, 544 |
| HpyAV | CCTTC | 5 cut(s) | 132, 148, 157, 253, 316 |
| HpyCH4III | ACNGT | 2 cut(s) | 252, 439 |
| HpyCH4IV | ACGT | 2 cut(s) | 174, 216 |
| HpyCH4V | TGCA | 2 cut(s) | 223, 637 |
| HpySE526I | ACGT | 2 cut(s) | 174, 216 |
| Hsp92I | GRCGYC | 1 cut(s) | 357 |
| HspAI | GCGC | 1 cut(s) | 357 |
| KasI | GGCGCC | 1 cut(s) | 356 |
| Kpn2I | TCCGGA | 2 cut(s) | 14, 396 |
| Kzo9I | GATC | 3 cut(s) | 11, 535, 546 |
| LguI | GCTCTTC | 1 cut(s) | 66 |
| LmnI | GCTCC | 2 cut(s) | 526, 624 |
| Lsp1109I | GCAGC | 1 cut(s) | 180 |
| MaeII | ACGT | 2 cut(s) | 174, 216 |
| MaeIII | GTNAC | 2 cut(s) | 574, 583 |
| MalI | GATC | 3 cut(s) | 13, 537, 548 |
| MbiI | CCGCTC | 2 cut(s) | 154, 627 |
| MboI | GATC | 3 cut(s) | 11, 535, 546 |
| MboII | GAAGA | 5 cut(s) | 53, 56, 182, 447, 487 |
| MfeI | CAATTG | 1 cut(s) | 32 |
| MflI | RGATCY | 2 cut(s) | 11, 546 |
| MhlI | GDGCHC | 1 cut(s) | 382 |
| MluCI | AATT | 7 cut(s) | 32, 117, 279, 361, 415, 468, 478 |
| Mly113I | GGCGCC | 1 cut(s) | 357 |
| MlyI | GAGTC | 1 cut(s) | 524 |
| MnlI | CCTC | 7 cut(s) | 102, 139, 240, 245, 526, 529, 601 |
| MroI | TCCGGA | 2 cut(s) | 14, 396 |
| MroXI | GAANNNNTTC | 1 cut(s) | 479 |
| MseI | TTAA | 2 cut(s) | 561, 658 |
| MslI | CAYNNNNRTG | 1 cut(s) | 619 |
| MspI | CCGG | 5 cut(s) | 15, 266, 297, 397, 524 |
| MunI | CAATTG | 1 cut(s) | 32 |
| NarI | GGCGCC | 1 cut(s) | 357 |
| NdeII | GATC | 3 cut(s) | 11, 535, 546 |
| NlaIV | GGNNCC | 2 cut(s) | 264, 358 |
| NmeAIII | GCCGAG | 1 cut(s) | 361 |
| NmuCI | GTSAC | 2 cut(s) | 574, 583 |
| OliI | CACNNNNGTG | 1 cut(s) | 619 |
| PciSI | GCTCTTC | 1 cut(s) | 66 |
| PdmI | GAANNNNTTC | 1 cut(s) | 479 |
| PfeI | GAWTC | 2 cut(s) | 43, 402 |
| PkrI | GCNGC | 2 cut(s) | 195, 629 |
| PleI | GAGTC | 1 cut(s) | 523 |
| PluTI | GGCGCC | 1 cut(s) | 360 |
| PpsI | GAGTC | 1 cut(s) | 523 |
| PshAI | GACNNNNGTC | 1 cut(s) | 581 |
| Psp124BI | GAGCTC | 1 cut(s) | 382 |
| Psp1406I | AACGTT | 1 cut(s) | 216 |
| PspFI | CCCAGC | 1 cut(s) | 55 |
| PspN4I | GGNNCC | 2 cut(s) | 264, 358 |
| PsuI | RGATCY | 2 cut(s) | 11, 546 |
| RsaI | GTAC | 1 cut(s) | 177 |
| RsaNI | GTAC | 1 cut(s) | 176 |
| RseI | CAYNNNNRTG | 1 cut(s) | 619 |
| SacI | GAGCTC | 1 cut(s) | 382 |
| SapI | GCTCTTC | 1 cut(s) | 66 |
| SaqAI | TTAA | 2 cut(s) | 561, 658 |
| SatI | GCNGC | 2 cut(s) | 194, 628 |
| Sau3AI | GATC | 3 cut(s) | 11, 535, 546 |
| SchI | GAGTC | 1 cut(s) | 524 |
| SduI | GDGCHC | 1 cut(s) | 382 |
| SetI | ASST | 8 cut(s) | 61, 81, 149, 177, 219, 382, 531, 655 |
| SfoI | GGCGCC | 1 cut(s) | 358 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 619 |
| SmlI | CTYRAG | 2 cut(s) | 197, 530 |
| SmoI | CTYRAG | 2 cut(s) | 197, 530 |
| Sse9I | AATT | 7 cut(s) | 32, 117, 279, 361, 415, 468, 478 |
| SsiI | CCGC | 5 cut(s) | 28, 126, 152, 300, 627 |
| SspDI | GGCGCC | 1 cut(s) | 356 |
| SstI | GAGCTC | 1 cut(s) | 382 |
| StyI | CCWWGG | 1 cut(s) | 342 |
| TaaI | ACNGT | 2 cut(s) | 252, 439 |
| TaiI | ACGT | 2 cut(s) | 177, 219 |
| TaqI | TCGA | 4 cut(s) | 156, 257, 494, 543 |
| TasI | AATT | 7 cut(s) | 32, 117, 279, 361, 415, 468, 478 |
| TauI | GCSGC | 1 cut(s) | 630 |
| TfiI | GAWTC | 2 cut(s) | 43, 402 |
| Tru1I | TTAA | 2 cut(s) | 561, 658 |
| Tru9I | TTAA | 2 cut(s) | 561, 658 |
| TscAI | CASTG | 1 cut(s) | 621 |
| TseFI | GTSAC | 2 cut(s) | 574, 583 |
| TseI | GCWGC | 1 cut(s) | 193 |
| Tsp45I | GTSAC | 2 cut(s) | 574, 583 |
| TspDTI | ATGAA | 2 cut(s) | 218, 472 |
| TspGWI | ACGGA | 1 cut(s) | 518 |
| TspRI | CASTG | 1 cut(s) | 621 |
| XapI | RAATTY | 2 cut(s) | 468, 478 |
| XmnI | GAANNNNTTC | 1 cut(s) | 479 |