ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 259 |
| AccI | GTMKAC | 1 cut(s) | 404 |
| AciI | CCGC | 2 cut(s) | 99, 259 |
| AclI | AACGTT | 1 cut(s) | 119 |
| AclWI | GGATC | 1 cut(s) | 255 |
| AfaI | GTAC | 1 cut(s) | 459 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 449 |
| AleI | CACNNNNGTG | 1 cut(s) | 435 |
| AluBI | AGCT | 4 cut(s) | 215, 286, 358, 415 |
| AluI | AGCT | 4 cut(s) | 215, 286, 358, 415 |
| Alw21I | GWGCWC | 1 cut(s) | 442 |
| AlwI | GGATC | 1 cut(s) | 255 |
| Ama87I | CYCGRG | 1 cut(s) | 443 |
| ApeKI | GCWGC | 1 cut(s) | 358 |
| AspLEI | GCGC | 1 cut(s) | 233 |
| AvaI | CYCGRG | 1 cut(s) | 443 |
| AxyI | CCTNAGG | 1 cut(s) | 15 |
| Bbv12I | GWGCWC | 1 cut(s) | 442 |
| BbvI | GCAGC | 1 cut(s) | 345 |
| BccI | CCATC | 1 cut(s) | 442 |
| BceAI | ACGGC | 1 cut(s) | 112 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 119, 153, 162, 196 |
| BclI | TGATCA | 1 cut(s) | 343 |
| BfaI | CTAG | 1 cut(s) | 216 |
| BisI | GCNGC | 3 cut(s) | 100, 260, 359 |
| BlsI | GCNGC | 3 cut(s) | 101, 261, 360 |
| BmeT110I | CYCGRG | 1 cut(s) | 443 |
| BmsI | GCATC | 2 cut(s) | 10, 15 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 275, 307 |
| BpuEI | CTTGAG | 1 cut(s) | 275 |
| Bsa29I | ATCGAT | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 1 cut(s) | 390 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 424, 454 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 449 |
| Bse118I | RCCGGY | 1 cut(s) | 79 |
| Bse21I | CCTNAGG | 1 cut(s) | 15 |
| Bse3DI | GCAATG | 2 cut(s) | 135, 140 |
| BseCI | ATCGAT | 1 cut(s) | 129 |
| BseDI | CCNNGG | 1 cut(s) | 390 |
| BseGI | GGATG | 1 cut(s) | 25 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BseMI | GCAATG | 2 cut(s) | 135, 140 |
| BseMII | CTCAG | 2 cut(s) | 6, 177 |
| BseXI | GCAGC | 1 cut(s) | 345 |
| BshVI | ATCGAT | 1 cut(s) | 129 |
| BsiHKAI | GWGCWC | 1 cut(s) | 442 |
| BsiHKCI | CYCGRG | 1 cut(s) | 443 |
| BsiSI | CCGG | 1 cut(s) | 80 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BsoBI | CYCGRG | 1 cut(s) | 443 |
| Bsp1286I | GDGCHC | 1 cut(s) | 442 |
| Bsp143I | GATC | 5 cut(s) | 39, 126, 130, 247, 343 |
| BspACI | CCGC | 2 cut(s) | 99, 259 |
| BspCNI | CTCAG | 2 cut(s) | 7, 178 |
| BspDI | ATCGAT | 1 cut(s) | 129 |
| BspPI | GGATC | 1 cut(s) | 255 |
| BsrBI | CCGCTC | 1 cut(s) | 259 |
| BsrDI | GCAATG | 2 cut(s) | 135, 140 |
| BsrFI | RCCGGY | 1 cut(s) | 79 |
| BssAI | RCCGGY | 1 cut(s) | 79 |
| BssECI | CCNNGG | 1 cut(s) | 390 |
| BssMI | GATC | 5 cut(s) | 39, 126, 130, 247, 343 |
| BssNAI | GTATAC | 1 cut(s) | 405 |
| BssT1I | CCWWGG | 1 cut(s) | 390 |
| Bst1107I | GTATAC | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 1 cut(s) | 462 |
| BstC8I | GCNNGC | 1 cut(s) | 428 |
| BstDEI | CTNAG | 3 cut(s) | 15, 33, 186 |
| BstF5I | GGATG | 1 cut(s) | 25 |
| BstHHI | GCGC | 1 cut(s) | 233 |
| BstKTI | GATC | 5 cut(s) | 42, 129, 133, 250, 346 |
| BstMBI | GATC | 5 cut(s) | 39, 126, 130, 247, 343 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 91, 228, 427 |
| BstV1I | GCAGC | 1 cut(s) | 345 |
| BstZ17I | GTATAC | 1 cut(s) | 405 |
| Bsu15I | ATCGAT | 1 cut(s) | 129 |
| Bsu36I | CCTNAGG | 1 cut(s) | 15 |
| BsuTUI | ATCGAT | 1 cut(s) | 129 |
| BtgZI | GCGATG | 1 cut(s) | 38 |
| BtsCI | GGATG | 1 cut(s) | 25 |
| Cac8I | GCNNGC | 1 cut(s) | 428 |
| CfoI | GCGC | 1 cut(s) | 233 |
| Cfr10I | RCCGGY | 1 cut(s) | 79 |
| ClaI | ATCGAT | 1 cut(s) | 129 |
| Csp6I | GTAC | 1 cut(s) | 458 |
| CviAII | CATG | 3 cut(s) | 162, 223, 418 |
| CviQI | GTAC | 1 cut(s) | 458 |
| DdeI | CTNAG | 3 cut(s) | 15, 33, 186 |
| DpnI | GATC | 5 cut(s) | 41, 128, 132, 249, 345 |
| DpnII | GATC | 5 cut(s) | 39, 126, 130, 247, 343 |
| Eco130I | CCWWGG | 1 cut(s) | 390 |
| Eco81I | CCTNAGG | 1 cut(s) | 15 |
| Eco88I | CYCGRG | 1 cut(s) | 443 |
| EcoT14I | CCWWGG | 1 cut(s) | 390 |
| ErhI | CCWWGG | 1 cut(s) | 390 |
| FaeI | CATG | 3 cut(s) | 165, 226, 421 |
| FaiI | YATR | 8 cut(s) | 163, 207, 209, 224, 317, 375, 405, 419 |
| FatI | CATG | 3 cut(s) | 161, 222, 417 |
| FbaI | TGATCA | 1 cut(s) | 343 |
| FblI | GTMKAC | 1 cut(s) | 404 |
| Fnu4HI | GCNGC | 3 cut(s) | 100, 260, 359 |
| FokI | GGATG | 1 cut(s) | 32 |
| Fsp4HI | GCNGC | 3 cut(s) | 100, 260, 359 |
| FspBI | CTAG | 1 cut(s) | 216 |
| GlaI | GCGC | 1 cut(s) | 232 |
| GluI | GCNGC | 3 cut(s) | 100, 260, 359 |
| HapII | CCGG | 1 cut(s) | 80 |
| HhaI | GCGC | 1 cut(s) | 233 |
| Hin1II | CATG | 3 cut(s) | 165, 226, 421 |
| Hin6I | GCGC | 1 cut(s) | 231 |
| HinP1I | GCGC | 1 cut(s) | 231 |
| HinfI | GANTC | 2 cut(s) | 46, 336 |
| HpaII | CCGG | 1 cut(s) | 80 |
| Hpy166II | GTNNAC | 2 cut(s) | 154, 405 |
| Hpy188I | TCNGA | 1 cut(s) | 200 |
| Hpy188III | TCNNGA | 5 cut(s) | 43, 64, 245, 333, 443 |
| Hpy8I | GTNNAC | 2 cut(s) | 154, 405 |
| HpyAV | CCTTC | 1 cut(s) | 313 |
| HpyCH4III | ACNGT | 1 cut(s) | 462 |
| HpyCH4IV | ACGT | 1 cut(s) | 119 |
| HpyCH4V | TGCA | 5 cut(s) | 94, 140, 353, 361, 421 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 91, 228, 427 |
| HpyF3I | CTNAG | 3 cut(s) | 15, 33, 186 |
| HpySE526I | ACGT | 1 cut(s) | 119 |
| Hsp92II | CATG | 3 cut(s) | 165, 226, 421 |
| HspAI | GCGC | 1 cut(s) | 231 |
| Ksp22I | TGATCA | 1 cut(s) | 343 |
| Kzo9I | GATC | 5 cut(s) | 39, 126, 130, 247, 343 |
| LmnI | GCTCC | 1 cut(s) | 445 |
| LpnPI | CCDG | 9 cut(s) | 27, 28, 77, 93, 98, 230, 318, 407, 412 |
| Lsp1109I | GCAGC | 1 cut(s) | 345 |
| LweI | GCATC | 2 cut(s) | 10, 15 |
| MaeI | CTAG | 1 cut(s) | 216 |
| MaeII | ACGT | 1 cut(s) | 119 |
| MaeIII | GTNAC | 1 cut(s) | 376 |
| MalI | GATC | 5 cut(s) | 41, 128, 132, 249, 345 |
| MbiI | CCGCTC | 1 cut(s) | 259 |
| MboI | GATC | 5 cut(s) | 39, 126, 130, 247, 343 |
| MhlI | GDGCHC | 1 cut(s) | 442 |
| MluCI | AATT | 3 cut(s) | 237, 279, 367 |
| MmeI | TCCRAC | 2 cut(s) | 102, 256 |
| MnlI | CCTC | 4 cut(s) | 10, 163, 264, 301 |
| MslI | CAYNNNNRTG | 1 cut(s) | 435 |
| MspI | CCGG | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 91, 228, 427 |
| NdeII | GATC | 5 cut(s) | 39, 126, 130, 247, 343 |
| NlaIII | CATG | 3 cut(s) | 165, 226, 421 |
| OliI | CACNNNNGTG | 1 cut(s) | 435 |
| PfeI | GAWTC | 2 cut(s) | 46, 336 |
| PkrI | GCNGC | 3 cut(s) | 101, 261, 360 |
| Psp1406I | AACGTT | 1 cut(s) | 119 |
| RsaI | GTAC | 1 cut(s) | 459 |
| RsaNI | GTAC | 1 cut(s) | 458 |
| RseI | CAYNNNNRTG | 1 cut(s) | 435 |
| SatI | GCNGC | 3 cut(s) | 100, 260, 359 |
| Sau3AI | GATC | 5 cut(s) | 39, 126, 130, 247, 343 |
| SduI | GDGCHC | 1 cut(s) | 442 |
| SetI | ASST | 7 cut(s) | 122, 153, 217, 288, 293, 360, 417 |
| SfaNI | GCATC | 2 cut(s) | 10, 15 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 435 |
| SmlI | CTYRAG | 1 cut(s) | 254 |
| SmoI | CTYRAG | 1 cut(s) | 254 |
| Sse9I | AATT | 3 cut(s) | 237, 279, 367 |
| SsiI | CCGC | 2 cut(s) | 99, 259 |
| SspMI | CTAG | 1 cut(s) | 216 |
| StyI | CCWWGG | 1 cut(s) | 390 |
| TaaI | ACNGT | 1 cut(s) | 462 |
| TaiI | ACGT | 1 cut(s) | 122 |
| TaqI | TCGA | 3 cut(s) | 129, 182, 250 |
| TasI | AATT | 3 cut(s) | 237, 279, 367 |
| TauI | GCSGC | 2 cut(s) | 102, 262 |
| TfiI | GAWTC | 2 cut(s) | 46, 336 |
| TseI | GCWGC | 1 cut(s) | 358 |
| TspDTI | ATGAA | 2 cut(s) | 97, 332 |
| TspGWI | ACGGA | 1 cut(s) | 390 |
| XmiI | GTMKAC | 1 cut(s) | 404 |
| XspI | CTAG | 1 cut(s) | 216 |