ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 28 - 82 | 1.1e-07 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 5 |
| AccB1I | GGYRCC | 1 cut(s) | 5 |
| AciI | CCGC | 1 cut(s) | 176 |
| AclWI | GGATC | 1 cut(s) | 216 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AfaI | GTAC | 2 cut(s) | 7, 89 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 192, 193, 205 |
| AflIII | ACRYGT | 1 cut(s) | 138 |
| AgsI | TTSAA | 1 cut(s) | 215 |
| AjnI | CCWGG | 1 cut(s) | 204 |
| AlwI | GGATC | 1 cut(s) | 216 |
| AoxI | GGCC | 2 cut(s) | 108, 183 |
| ApeKI | GCWGC | 1 cut(s) | 26 |
| Asp718I | GGTACC | 1 cut(s) | 5 |
| AspS9I | GGNCC | 3 cut(s) | 109, 184, 196 |
| AvaII | GGWCC | 1 cut(s) | 196 |
| BanI | GGYRCC | 1 cut(s) | 5 |
| BbvI | GCAGC | 1 cut(s) | 38 |
| BciT130I | CCWGG | 1 cut(s) | 206 |
| BfaI | CTAG | 2 cut(s) | 66, 123 |
| BisI | GCNGC | 2 cut(s) | 27, 177 |
| BlsI | GCNGC | 2 cut(s) | 28, 178 |
| BmcAI | AGTACT | 1 cut(s) | 89 |
| Bme1390I | CCNGG | 1 cut(s) | 206 |
| Bme18I | GGWCC | 1 cut(s) | 196 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 184, 196 |
| BmiI | GGNNCC | 3 cut(s) | 7, 197, 198 |
| BmrFI | CCNGG | 1 cut(s) | 206 |
| BmrI | ACTGGG | 1 cut(s) | 181 |
| BmuI | ACTGGG | 1 cut(s) | 181 |
| BpmI | CTGGAG | 1 cut(s) | 188 |
| BpuEI | CTTGAG | 1 cut(s) | 100 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 192, 193, 205 |
| Bse1I | ACTGG | 3 cut(s) | 95, 186, 187 |
| BseBI | CCWGG | 1 cut(s) | 206 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 192, 193, 205 |
| BseNI | ACTGG | 3 cut(s) | 95, 186, 187 |
| BseRI | GAGGAG | 1 cut(s) | 46 |
| BseXI | GCAGC | 1 cut(s) | 38 |
| BshFI | GGCC | 2 cut(s) | 110, 185 |
| BshNI | GGYRCC | 1 cut(s) | 5 |
| BslFI | GGGAC | 1 cut(s) | 182 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 192, 193, 205 |
| BsmFI | GGGAC | 1 cut(s) | 182 |
| BsnI | GGCC | 2 cut(s) | 110, 185 |
| Bsp143I | GATC | 1 cut(s) | 208 |
| BspACI | CCGC | 1 cut(s) | 176 |
| BspANI | GGCC | 2 cut(s) | 110, 185 |
| BspLI | GGNNCC | 3 cut(s) | 7, 197, 198 |
| BspPI | GGATC | 1 cut(s) | 216 |
| BspT107I | GGYRCC | 1 cut(s) | 5 |
| BsrI | ACTGG | 3 cut(s) | 95, 186, 187 |
| BssMI | GATC | 1 cut(s) | 208 |
| Bst2UI | CCWGG | 1 cut(s) | 206 |
| Bst6I | CTCTTC | 2 cut(s) | 64, 149 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 108 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstKTI | GATC | 1 cut(s) | 211 |
| BstMBI | GATC | 1 cut(s) | 208 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 182 |
| BstNI | CCWGG | 1 cut(s) | 206 |
| BstNSI | RCATGY | 3 cut(s) | 26, 142, 223 |
| BstSCI | CCNGG | 1 cut(s) | 204 |
| BstV1I | GCAGC | 1 cut(s) | 38 |
| BstX2I | RGATCY | 1 cut(s) | 208 |
| BstYI | RGATCY | 1 cut(s) | 208 |
| BsuRI | GGCC | 2 cut(s) | 110, 185 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| BtsIMutI | CAGTG | 3 cut(s) | 179, 194, 237 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 108 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 184, 196 |
| Csp6I | GTAC | 2 cut(s) | 6, 88 |
| CviAII | CATG | 4 cut(s) | 23, 31, 139, 220 |
| CviJI | RGCY | 3 cut(s) | 29, 110, 185 |
| CviKI_1 | RGCY | 3 cut(s) | 29, 110, 185 |
| CviQI | GTAC | 2 cut(s) | 6, 88 |
| DpnI | GATC | 1 cut(s) | 210 |
| DpnII | GATC | 1 cut(s) | 208 |
| Eam1104I | CTCTTC | 2 cut(s) | 64, 149 |
| EarI | CTCTTC | 2 cut(s) | 64, 149 |
| Eco47I | GGWCC | 1 cut(s) | 196 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| EcoO109I | RGGNCCY | 1 cut(s) | 196 |
| EcoRII | CCWGG | 1 cut(s) | 204 |
| EcoT22I | ATGCAT | 1 cut(s) | 221 |
| FaeI | CATG | 4 cut(s) | 26, 34, 142, 223 |
| FaiI | YATR | 7 cut(s) | 11, 13, 15, 24, 32, 140, 221 |
| FaqI | GGGAC | 1 cut(s) | 182 |
| FatI | CATG | 4 cut(s) | 22, 30, 138, 219 |
| Fnu4HI | GCNGC | 2 cut(s) | 27, 177 |
| FokI | GGATG | 1 cut(s) | 105 |
| Fsp4HI | GCNGC | 2 cut(s) | 27, 177 |
| FspBI | CTAG | 2 cut(s) | 66, 123 |
| GluI | GCNGC | 2 cut(s) | 27, 177 |
| GsuI | CTGGAG | 1 cut(s) | 188 |
| HaeIII | GGCC | 2 cut(s) | 110, 185 |
| Hin1II | CATG | 4 cut(s) | 26, 34, 142, 223 |
| HinfI | GANTC | 1 cut(s) | 126 |
| Hpy188III | TCNNGA | 1 cut(s) | 79 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyCH4IV | ACGT | 1 cut(s) | 37 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 34, 136, 219 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 182 |
| HpySE526I | ACGT | 1 cut(s) | 37 |
| Hsp92II | CATG | 4 cut(s) | 26, 34, 142, 223 |
| KflI | GGGWCCC | 1 cut(s) | 196 |
| KpnI | GGTACC | 1 cut(s) | 9 |
| Kzo9I | GATC | 1 cut(s) | 208 |
| LpnPI | CCDG | 6 cut(s) | 76, 92, 167, 191, 200, 218 |
| Lsp1109I | GCAGC | 1 cut(s) | 38 |
| MaeI | CTAG | 2 cut(s) | 66, 123 |
| MaeII | ACGT | 1 cut(s) | 37 |
| MaeIII | GTNAC | 1 cut(s) | 235 |
| MalI | GATC | 1 cut(s) | 210 |
| MboI | GATC | 1 cut(s) | 208 |
| MboII | GAAGA | 4 cut(s) | 51, 54, 166, 203 |
| MflI | RGATCY | 1 cut(s) | 208 |
| MlyI | GAGTC | 1 cut(s) | 135 |
| MnlI | CCTC | 3 cut(s) | 37, 64, 67 |
| Mph1103I | ATGCAT | 1 cut(s) | 221 |
| MspR9I | CCNGG | 1 cut(s) | 206 |
| MvaI | CCWGG | 1 cut(s) | 206 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 182 |
| NdeII | GATC | 1 cut(s) | 208 |
| NlaIII | CATG | 4 cut(s) | 26, 34, 142, 223 |
| NlaIV | GGNNCC | 3 cut(s) | 7, 197, 198 |
| NmuCI | GTSAC | 1 cut(s) | 235 |
| NsiI | ATGCAT | 1 cut(s) | 221 |
| NspI | RCATGY | 3 cut(s) | 26, 142, 223 |
| PaeI | GCATGC | 1 cut(s) | 26 |
| PciI | ACATGT | 1 cut(s) | 138 |
| PfoI | TCCNGGA | 1 cut(s) | 204 |
| PkrI | GCNGC | 2 cut(s) | 28, 178 |
| PleI | GAGTC | 1 cut(s) | 134 |
| PpsI | GAGTC | 1 cut(s) | 134 |
| PpuMI | RGGWCCY | 1 cut(s) | 196 |
| PscI | ACATGT | 1 cut(s) | 138 |
| Psp5II | RGGWCCY | 1 cut(s) | 196 |
| Psp6I | CCWGG | 1 cut(s) | 204 |
| PspGI | CCWGG | 1 cut(s) | 204 |
| PspN4I | GGNNCC | 3 cut(s) | 7, 197, 198 |
| PspPI | GGNCC | 3 cut(s) | 109, 184, 196 |
| PspPPI | RGGWCCY | 1 cut(s) | 196 |
| PsuI | RGATCY | 1 cut(s) | 208 |
| RsaI | GTAC | 2 cut(s) | 7, 89 |
| RsaNI | GTAC | 2 cut(s) | 6, 88 |
| SatI | GCNGC | 2 cut(s) | 27, 177 |
| Sau3AI | GATC | 1 cut(s) | 208 |
| Sau96I | GGNCC | 3 cut(s) | 109, 184, 196 |
| ScaI | AGTACT | 1 cut(s) | 89 |
| SchI | GAGTC | 1 cut(s) | 135 |
| ScrFI | CCNGG | 1 cut(s) | 206 |
| SetI | ASST | 2 cut(s) | 40, 56 |
| SinI | GGWCC | 1 cut(s) | 196 |
| SmlI | CTYRAG | 1 cut(s) | 79 |
| SmoI | CTYRAG | 1 cut(s) | 79 |
| SphI | GCATGC | 1 cut(s) | 26 |
| SsiI | CCGC | 1 cut(s) | 176 |
| SspMI | CTAG | 2 cut(s) | 66, 123 |
| StyD4I | CCNGG | 1 cut(s) | 204 |
| TaiI | ACGT | 1 cut(s) | 40 |
| TatI | WGTACW | 1 cut(s) | 87 |
| TauI | GCSGC | 1 cut(s) | 179 |
| TscAI | CASTG | 3 cut(s) | 186, 194, 244 |
| TseFI | GTSAC | 1 cut(s) | 235 |
| TseI | GCWGC | 1 cut(s) | 26 |
| Tsp45I | GTSAC | 1 cut(s) | 235 |
| TspDTI | ATGAA | 1 cut(s) | 107 |
| TspGWI | ACGGA | 1 cut(s) | 215 |
| TspRI | CASTG | 3 cut(s) | 186, 194, 244 |
| VpaK11BI | GGWCC | 1 cut(s) | 196 |
| XceI | RCATGY | 3 cut(s) | 26, 142, 223 |
| XspI | CTAG | 2 cut(s) | 66, 123 |
| ZrmI | AGTACT | 1 cut(s) | 89 |
| Zsp2I | ATGCAT | 1 cut(s) | 221 |