Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 30 - 115 | 6.1e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 262 |
| AcsI | RAATTY | 2 cut(s) | 55, 61 |
| AfaI | GTAC | 1 cut(s) | 352 |
| AflIII | ACRYGT | 1 cut(s) | 298 |
| AgsI | TTSAA | 2 cut(s) | 61, 176 |
| AjiI | CACGTC | 1 cut(s) | 27 |
| Alw26I | GTCTC | 1 cut(s) | 22 |
| ApeKI | GCWGC | 1 cut(s) | 151 |
| ApoI | RAATTY | 2 cut(s) | 55, 61 |
| AseI | ATTAAT | 1 cut(s) | 191 |
| AsuHPI | GGTGA | 3 cut(s) | 133, 191, 332 |
| BauI | CACGAG | 1 cut(s) | 210 |
| BbvI | GCAGC | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 22 |
| BfaI | CTAG | 2 cut(s) | 348, 410 |
| BfmI | CTRYAG | 1 cut(s) | 304 |
| BisI | GCNGC | 1 cut(s) | 152 |
| BlsI | GCNGC | 1 cut(s) | 153 |
| BmgBI | CACGTC | 1 cut(s) | 27 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 155, 185 |
| BseGI | GGATG | 2 cut(s) | 353, 370 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseRI | GAGGAG | 2 cut(s) | 10, 176 |
| BseXI | GCAGC | 1 cut(s) | 163 |
| BsmAI | GTCTC | 1 cut(s) | 22 |
| Bsp143I | GATC | 1 cut(s) | 45 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspHI | TCATGA | 1 cut(s) | 42 |
| BssMI | GATC | 1 cut(s) | 45 |
| BssSI | CACGAG | 1 cut(s) | 210 |
| Bst2BI | CACGAG | 1 cut(s) | 210 |
| Bst4CI | ACNGT | 1 cut(s) | 185 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 248 |
| BstDEI | CTNAG | 3 cut(s) | 95, 231, 293 |
| BstF5I | GGATG | 2 cut(s) | 353, 370 |
| BstKTI | GATC | 1 cut(s) | 48 |
| BstMAI | GTCTC | 1 cut(s) | 22 |
| BstMBI | GATC | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 125, 248, 344 |
| BstNSI | RCATGY | 1 cut(s) | 302 |
| BstSFI | CTRYAG | 1 cut(s) | 304 |
| BstV1I | GCAGC | 1 cut(s) | 163 |
| BtrI | CACGTC | 1 cut(s) | 27 |
| BtsCI | GGATG | 2 cut(s) | 353, 370 |
| CciI | TCATGA | 1 cut(s) | 42 |
| CseI | GACGC | 1 cut(s) | 41 |
| Csp6I | GTAC | 1 cut(s) | 351 |
| CviAII | CATG | 4 cut(s) | 43, 76, 299, 358 |
| CviJI | RGCY | 1 cut(s) | 119 |
| CviKI_1 | RGCY | 1 cut(s) | 119 |
| CviQI | GTAC | 1 cut(s) | 351 |
| DdeI | CTNAG | 3 cut(s) | 95, 231, 293 |
| DpnI | GATC | 1 cut(s) | 47 |
| DpnII | GATC | 1 cut(s) | 45 |
| Eco32I | GATATC | 1 cut(s) | 394 |
| EcoRV | GATATC | 1 cut(s) | 394 |
| FaeI | CATG | 4 cut(s) | 46, 79, 302, 361 |
| FatI | CATG | 4 cut(s) | 42, 75, 298, 357 |
| Fnu4HI | GCNGC | 1 cut(s) | 152 |
| FokI | GGATG | 2 cut(s) | 340, 377 |
| Fsp4HI | GCNGC | 1 cut(s) | 152 |
| FspBI | CTAG | 2 cut(s) | 348, 410 |
| GluI | GCNGC | 1 cut(s) | 152 |
| HgaI | GACGC | 1 cut(s) | 41 |
| Hin1II | CATG | 4 cut(s) | 46, 79, 302, 361 |
| HinfI | GANTC | 2 cut(s) | 91, 333 |
| HphI | GGTGA | 3 cut(s) | 133, 191, 332 |
| Hpy188I | TCNGA | 3 cut(s) | 31, 50, 232 |
| Hpy188III | TCNNGA | 3 cut(s) | 43, 212, 389 |
| Hpy99I | CGWCG | 1 cut(s) | 31 |
| HpyAV | CCTTC | 1 cut(s) | 170 |
| HpyCH4III | ACNGT | 1 cut(s) | 185 |
| HpyCH4IV | ACGT | 2 cut(s) | 26, 262 |
| HpyCH4V | TGCA | 5 cut(s) | 188, 242, 251, 258, 275 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 125, 248, 344 |
| HpyF3I | CTNAG | 3 cut(s) | 95, 231, 293 |
| HpySE526I | ACGT | 2 cut(s) | 26, 262 |
| Hsp92II | CATG | 4 cut(s) | 46, 79, 302, 361 |
| Kzo9I | GATC | 1 cut(s) | 45 |
| LpnPI | CCDG | 1 cut(s) | 402 |
| Lsp1109I | GCAGC | 1 cut(s) | 163 |
| MaeI | CTAG | 2 cut(s) | 348, 410 |
| MaeII | ACGT | 2 cut(s) | 26, 262 |
| MaeIII | GTNAC | 3 cut(s) | 139, 179, 322 |
| MalI | GATC | 1 cut(s) | 47 |
| MboI | GATC | 1 cut(s) | 45 |
| MluCI | AATT | 6 cut(s) | 55, 61, 156, 192, 243, 280 |
| MlyI | GAGTC | 2 cut(s) | 100, 327 |
| MmeI | TCCRAC | 2 cut(s) | 9, 342 |
| MseI | TTAA | 3 cut(s) | 191, 279, 424 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 125, 248, 344 |
| NdeII | GATC | 1 cut(s) | 45 |
| NlaIII | CATG | 4 cut(s) | 46, 79, 302, 361 |
| NmuCI | GTSAC | 2 cut(s) | 139, 179 |
| NspI | RCATGY | 1 cut(s) | 302 |
| PagI | TCATGA | 1 cut(s) | 42 |
| PciI | ACATGT | 1 cut(s) | 298 |
| PkrI | GCNGC | 1 cut(s) | 153 |
| PleI | GAGTC | 2 cut(s) | 99, 327 |
| PpsI | GAGTC | 2 cut(s) | 99, 327 |
| PscI | ACATGT | 1 cut(s) | 298 |
| PshBI | ATTAAT | 1 cut(s) | 191 |
| Psp1406I | AACGTT | 1 cut(s) | 262 |
| RsaI | GTAC | 1 cut(s) | 352 |
| RsaNI | GTAC | 1 cut(s) | 351 |
| SaqAI | TTAA | 3 cut(s) | 191, 279, 424 |
| SatI | GCNGC | 1 cut(s) | 152 |
| Sau3AI | GATC | 1 cut(s) | 45 |
| SchI | GAGTC | 2 cut(s) | 100, 327 |
| SetI | ASST | 6 cut(s) | 29, 168, 181, 237, 265, 345 |
| SfcI | CTRYAG | 1 cut(s) | 304 |
| Sse9I | AATT | 6 cut(s) | 55, 61, 156, 192, 243, 280 |
| SspMI | CTAG | 2 cut(s) | 348, 410 |
| TaaI | ACNGT | 1 cut(s) | 185 |
| TaiI | ACGT | 2 cut(s) | 29, 265 |
| TaqI | TCGA | 1 cut(s) | 414 |
| TasI | AATT | 6 cut(s) | 55, 61, 156, 192, 243, 280 |
| TatI | WGTACW | 1 cut(s) | 350 |
| Tru1I | TTAA | 3 cut(s) | 191, 279, 424 |
| Tru9I | TTAA | 3 cut(s) | 191, 279, 424 |
| TseFI | GTSAC | 2 cut(s) | 139, 179 |
| TseI | GCWGC | 1 cut(s) | 151 |
| Tsp45I | GTSAC | 2 cut(s) | 139, 179 |
| TspDTI | ATGAA | 1 cut(s) | 274 |
| VspI | ATTAAT | 1 cut(s) | 191 |
| XapI | RAATTY | 2 cut(s) | 55, 61 |
| XceI | RCATGY | 1 cut(s) | 302 |
| XspI | CTAG | 2 cut(s) | 348, 410 |