Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 13 - 125 | 2.1e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 421 |
| AciI | CCGC | 3 cut(s) | 397, 421, 554 |
| AclWI | GGATC | 2 cut(s) | 388, 610 |
| AdeI | CACNNNGTG | 1 cut(s) | 509 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 488, 567 |
| AgsI | TTSAA | 6 cut(s) | 98, 154, 215, 415, 592, 634 |
| AhlI | ACTAGT | 1 cut(s) | 425 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 146, 178 |
| AluBI | AGCT | 4 cut(s) | 8, 101, 380, 611 |
| AluI | AGCT | 4 cut(s) | 8, 101, 380, 611 |
| Alw26I | GTCTC | 1 cut(s) | 344 |
| AlwI | GGATC | 2 cut(s) | 388, 610 |
| AoxI | GGCC | 1 cut(s) | 240 |
| ApeKI | GCWGC | 4 cut(s) | 5, 8, 399, 557 |
| AseI | ATTAAT | 1 cut(s) | 657 |
| AspS9I | GGNCC | 1 cut(s) | 469 |
| AsuC2I | CCSGG | 1 cut(s) | 482 |
| AsuHPI | GGTGA | 1 cut(s) | 290 |
| AvaII | GGWCC | 1 cut(s) | 469 |
| BbsI | GAAGAC | 1 cut(s) | 578 |
| BbvI | GCAGC | 3 cut(s) | 17, 386, 544 |
| BccI | CCATC | 1 cut(s) | 161 |
| BcnI | CCSGG | 1 cut(s) | 482 |
| BcoDI | GTCTC | 1 cut(s) | 344 |
| BcuI | ACTAGT | 1 cut(s) | 425 |
| BfaI | CTAG | 1 cut(s) | 426 |
| BfmI | CTRYAG | 1 cut(s) | 486 |
| BisI | GCNGC | 5 cut(s) | 6, 9, 400, 555, 558 |
| BlpI | GCTNAGC | 1 cut(s) | 612 |
| BlsI | GCNGC | 5 cut(s) | 7, 10, 401, 556, 559 |
| Bme1390I | CCNGG | 1 cut(s) | 482 |
| Bme18I | GGWCC | 1 cut(s) | 469 |
| BmgT120I | GGNCC | 1 cut(s) | 469 |
| BmrFI | CCNGG | 1 cut(s) | 482 |
| BmrI | ACTGGG | 1 cut(s) | 442 |
| BmsI | GCATC | 2 cut(s) | 219, 574 |
| BmuI | ACTGGG | 1 cut(s) | 442 |
| BpiI | GAAGAC | 1 cut(s) | 578 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 31, 63 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 612 |
| BpuEI | CTTGAG | 1 cut(s) | 253 |
| BpuMI | CCSGG | 1 cut(s) | 482 |
| BsaJI | CCNNGG | 1 cut(s) | 561 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 488, 567 |
| Bse1I | ACTGG | 1 cut(s) | 437 |
| BseDI | CCNNGG | 1 cut(s) | 561 |
| BseGI | GGATG | 2 cut(s) | 172, 544 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 488, 567 |
| BseMII | CTCAG | 2 cut(s) | 138, 603 |
| BseNI | ACTGG | 1 cut(s) | 437 |
| BseXI | GCAGC | 3 cut(s) | 17, 386, 544 |
| BshFI | GGCC | 1 cut(s) | 242 |
| BsiSI | CCGG | 2 cut(s) | 407, 482 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 488, 567 |
| BsmAI | GTCTC | 1 cut(s) | 344 |
| BsnI | GGCC | 1 cut(s) | 242 |
| Bsp143I | GATC | 2 cut(s) | 393, 602 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 612 |
| BspACI | CCGC | 3 cut(s) | 397, 421, 554 |
| BspANI | GGCC | 1 cut(s) | 242 |
| BspCNI | CTCAG | 2 cut(s) | 139, 604 |
| BspPI | GGATC | 2 cut(s) | 388, 610 |
| BsrBI | CCGCTC | 1 cut(s) | 421 |
| BsrI | ACTGG | 1 cut(s) | 437 |
| BssECI | CCNNGG | 1 cut(s) | 561 |
| BssMI | GATC | 2 cut(s) | 393, 602 |
| BssT1I | CCWWGG | 1 cut(s) | 561 |
| Bst4CI | ACNGT | 1 cut(s) | 347 |
| BstC8I | GCNNGC | 2 cut(s) | 180, 240 |
| BstDEI | CTNAG | 2 cut(s) | 147, 612 |
| BstF5I | GGATG | 2 cut(s) | 172, 544 |
| BstKTI | GATC | 2 cut(s) | 396, 605 |
| BstMAI | GTCTC | 1 cut(s) | 344 |
| BstMBI | GATC | 2 cut(s) | 393, 602 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 113 |
| BstNSI | RCATGY | 1 cut(s) | 320 |
| BstSCI | CCNGG | 1 cut(s) | 480 |
| BstSFI | CTRYAG | 1 cut(s) | 486 |
| BstV1I | GCAGC | 3 cut(s) | 17, 386, 544 |
| BstV2I | GAAGAC | 1 cut(s) | 578 |
| BstX2I | RGATCY | 1 cut(s) | 393 |
| BstYI | RGATCY | 1 cut(s) | 393 |
| BsuRI | GGCC | 1 cut(s) | 242 |
| BtsCI | GGATG | 2 cut(s) | 172, 544 |
| BtsI | GCAGTG | 1 cut(s) | 67 |
| BtsIMutI | CAGTG | 2 cut(s) | 67, 455 |
| Cac8I | GCNNGC | 2 cut(s) | 180, 240 |
| Cfr13I | GGNCC | 1 cut(s) | 469 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 5 cut(s) | 53, 86, 143, 197, 317 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 2 cut(s) | 147, 612 |
| DpnI | GATC | 2 cut(s) | 395, 604 |
| DpnII | GATC | 2 cut(s) | 393, 602 |
| DraIII | CACNNNGTG | 1 cut(s) | 509 |
| Eco130I | CCWWGG | 1 cut(s) | 561 |
| Eco147I | AGGCCT | 1 cut(s) | 242 |
| Eco47I | GGWCC | 1 cut(s) | 469 |
| EcoT14I | CCWWGG | 1 cut(s) | 561 |
| EcoT22I | ATGCAT | 1 cut(s) | 589 |
| ErhI | CCWWGG | 1 cut(s) | 561 |
| FaeI | CATG | 5 cut(s) | 56, 89, 146, 200, 320 |
| FatI | CATG | 5 cut(s) | 52, 85, 142, 196, 316 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 9, 400, 555, 558 |
| FokI | GGATG | 2 cut(s) | 179, 551 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 9, 400, 555, 558 |
| FspBI | CTAG | 1 cut(s) | 426 |
| GluI | GCNGC | 5 cut(s) | 6, 9, 400, 555, 558 |
| HaeIII | GGCC | 1 cut(s) | 242 |
| HapII | CCGG | 2 cut(s) | 407, 482 |
| Hin1II | CATG | 5 cut(s) | 56, 89, 146, 200, 320 |
| HincII | GTYRAC | 1 cut(s) | 262 |
| HindII | GTYRAC | 1 cut(s) | 262 |
| HpaII | CCGG | 2 cut(s) | 407, 482 |
| HphI | GGTGA | 1 cut(s) | 290 |
| Hpy166II | GTNNAC | 2 cut(s) | 262, 690 |
| Hpy188I | TCNGA | 4 cut(s) | 329, 384, 462, 646 |
| Hpy8I | GTNNAC | 2 cut(s) | 262, 690 |
| HpyAV | CCTTC | 1 cut(s) | 292 |
| HpyCH4III | ACNGT | 1 cut(s) | 347 |
| HpyCH4V | TGCA | 2 cut(s) | 124, 587 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 113 |
| HpyF3I | CTNAG | 2 cut(s) | 147, 612 |
| Hsp92II | CATG | 5 cut(s) | 56, 89, 146, 200, 320 |
| Kzo9I | GATC | 2 cut(s) | 393, 602 |
| LpnPI | CCDG | 9 cut(s) | 87, 97, 164, 224, 418, 420, 485, 495, 696 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 386, 544 |
| LweI | GCATC | 2 cut(s) | 219, 574 |
| MaeI | CTAG | 1 cut(s) | 426 |
| MaeIII | GTNAC | 2 cut(s) | 428, 669 |
| MalI | GATC | 2 cut(s) | 395, 604 |
| MbiI | CCGCTC | 1 cut(s) | 421 |
| MboI | GATC | 2 cut(s) | 393, 602 |
| MboII | GAAGA | 2 cut(s) | 583, 593 |
| MfeI | CAATTG | 1 cut(s) | 125 |
| MflI | RGATCY | 1 cut(s) | 393 |
| MluCI | AATT | 1 cut(s) | 125 |
| MmeI | TCCRAC | 1 cut(s) | 440 |
| MnlI | CCTC | 7 cut(s) | 50, 168, 275, 378, 414, 485, 688 |
| Mph1103I | ATGCAT | 1 cut(s) | 589 |
| MseI | TTAA | 2 cut(s) | 545, 657 |
| MslI | CAYNNNNRTG | 1 cut(s) | 659 |
| MspA1I | CMGCKG | 3 cut(s) | 8, 399, 611 |
| MspI | CCGG | 2 cut(s) | 407, 482 |
| MspR9I | CCNGG | 1 cut(s) | 482 |
| MunI | CAATTG | 1 cut(s) | 125 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 113 |
| NciI | CCSGG | 1 cut(s) | 482 |
| NdeII | GATC | 2 cut(s) | 393, 602 |
| NlaIII | CATG | 5 cut(s) | 56, 89, 146, 200, 320 |
| NmuCI | GTSAC | 2 cut(s) | 428, 669 |
| NsiI | ATGCAT | 1 cut(s) | 589 |
| NspI | RCATGY | 1 cut(s) | 320 |
| PceI | AGGCCT | 1 cut(s) | 242 |
| PkrI | GCNGC | 5 cut(s) | 7, 10, 401, 556, 559 |
| PshBI | ATTAAT | 1 cut(s) | 657 |
| PspPI | GGNCC | 1 cut(s) | 469 |
| PsuI | RGATCY | 1 cut(s) | 393 |
| PvuII | CAGCTG | 2 cut(s) | 8, 611 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 1 cut(s) | 659 |
| SaqAI | TTAA | 2 cut(s) | 545, 657 |
| SatI | GCNGC | 5 cut(s) | 6, 9, 400, 555, 558 |
| Sau3AI | GATC | 2 cut(s) | 393, 602 |
| Sau96I | GGNCC | 1 cut(s) | 469 |
| ScrFI | CCNGG | 1 cut(s) | 482 |
| SetI | ASST | 8 cut(s) | 10, 32, 103, 267, 382, 567, 613, 671 |
| SfaNI | GCATC | 2 cut(s) | 219, 574 |
| SfcI | CTRYAG | 1 cut(s) | 486 |
| SinI | GGWCC | 1 cut(s) | 469 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 659 |
| SmlI | CTYRAG | 1 cut(s) | 268 |
| SmoI | CTYRAG | 1 cut(s) | 268 |
| SpeI | ACTAGT | 1 cut(s) | 425 |
| Sse9I | AATT | 1 cut(s) | 125 |
| SseBI | AGGCCT | 1 cut(s) | 242 |
| SsiI | CCGC | 3 cut(s) | 397, 421, 554 |
| SspI | AATATT | 1 cut(s) | 210 |
| SspMI | CTAG | 1 cut(s) | 426 |
| StuI | AGGCCT | 1 cut(s) | 242 |
| StyD4I | CCNGG | 1 cut(s) | 480 |
| StyI | CCWWGG | 1 cut(s) | 561 |
| TaaI | ACNGT | 1 cut(s) | 347 |
| TaqII | GACCGA | 1 cut(s) | 457 |
| TasI | AATT | 1 cut(s) | 125 |
| TauI | GCSGC | 1 cut(s) | 557 |
| Tru1I | TTAA | 2 cut(s) | 545, 657 |
| Tru9I | TTAA | 2 cut(s) | 545, 657 |
| TscAI | CASTG | 2 cut(s) | 67, 455 |
| TseFI | GTSAC | 2 cut(s) | 428, 669 |
| TseI | GCWGC | 4 cut(s) | 5, 8, 399, 557 |
| Tsp45I | GTSAC | 2 cut(s) | 428, 669 |
| TspGWI | ACGGA | 1 cut(s) | 615 |
| TspRI | CASTG | 2 cut(s) | 67, 455 |
| VpaK11BI | GGWCC | 1 cut(s) | 469 |
| VspI | ATTAAT | 1 cut(s) | 657 |
| XceI | RCATGY | 1 cut(s) | 320 |
| XspI | CTAG | 1 cut(s) | 426 |
| Zsp2I | ATGCAT | 1 cut(s) | 589 |