Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 208 |
| Acc36I | ACCTGC | 1 cut(s) | 208 |
| AccIII | TCCGGA | 1 cut(s) | 240 |
| AciI | CCGC | 3 cut(s) | 856, 1012, 1121 |
| AclWI | GGATC | 1 cut(s) | 1064 |
| AcsI | RAATTY | 3 cut(s) | 76, 391, 940 |
| AdeI | CACNNNGTG | 1 cut(s) | 1229 |
| AfeI | AGCGCT | 1 cut(s) | 465 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 504, 769, 770, 796, 899 |
| AgsI | TTSAA | 5 cut(s) | 377, 420, 832, 910, 1102 |
| AjnI | CCWGG | 2 cut(s) | 763, 1287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 601, 633 |
| Alw26I | GTCTC | 5 cut(s) | 6, 891, 1030, 1152, 1244 |
| AlwI | GGATC | 1 cut(s) | 1064 |
| Ama87I | CYCGRG | 1 cut(s) | 1140 |
| Aor13HI | TCCGGA | 1 cut(s) | 240 |
| Aor51HI | AGCGCT | 1 cut(s) | 465 |
| AoxI | GGCC | 2 cut(s) | 269, 798 |
| ApeKI | GCWGC | 5 cut(s) | 353, 508, 1127, 1259, 1313 |
| ApoI | RAATTY | 3 cut(s) | 76, 391, 940 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1029 |
| AspLEI | GCGC | 1 cut(s) | 466 |
| AspS9I | GGNCC | 1 cut(s) | 1325 |
| AsuC2I | CCSGG | 2 cut(s) | 1141, 1142 |
| AsuHPI | GGTGA | 2 cut(s) | 134, 236 |
| AsuNHI | GCTAGC | 2 cut(s) | 85, 785 |
| AvaI | CYCGRG | 1 cut(s) | 1140 |
| AvaII | GGWCC | 1 cut(s) | 1325 |
| BaeGI | GKGCMC | 1 cut(s) | 764 |
| BbvI | GCAGC | 5 cut(s) | 340, 495, 1114, 1246, 1300 |
| BccI | CCATC | 5 cut(s) | 221, 665, 917, 947, 1220 |
| BciT130I | CCWGG | 2 cut(s) | 765, 1289 |
| BciVI | GTATCC | 1 cut(s) | 255 |
| BcnI | CCSGG | 2 cut(s) | 1141, 1142 |
| BcoDI | GTCTC | 5 cut(s) | 6, 891, 1030, 1152, 1244 |
| BfaI | CTAG | 8 cut(s) | 41, 86, 90, 138, 531, 786, 1151, 1157 |
| BfmI | CTRYAG | 1 cut(s) | 1260 |
| BfoI | RGCGCY | 1 cut(s) | 467 |
| BfuAI | ACCTGC | 1 cut(s) | 208 |
| BfuI | GTATCC | 1 cut(s) | 255 |
| BisI | GCNGC | 5 cut(s) | 354, 509, 1128, 1260, 1314 |
| BlsI | GCNGC | 5 cut(s) | 355, 510, 1129, 1261, 1315 |
| Bme1390I | CCNGG | 4 cut(s) | 765, 1141, 1142, 1289 |
| Bme18I | GGWCC | 1 cut(s) | 1325 |
| BmeT110I | CYCGRG | 1 cut(s) | 1140 |
| BmgT120I | GGNCC | 1 cut(s) | 1325 |
| BmiI | GGNNCC | 1 cut(s) | 1293 |
| BmrFI | CCNGG | 4 cut(s) | 765, 1141, 1142, 1289 |
| BmsI | GCATC | 7 cut(s) | 340, 376, 445, 829, 1108, 1114, 1300 |
| BmtI | GCTAGC | 2 cut(s) | 89, 789 |
| BpmI | CTGGAG | 2 cut(s) | 879, 1310 |
| BpuEI | CTTGAG | 2 cut(s) | 433, 477 |
| BpuMI | CCSGG | 2 cut(s) | 1141, 1142 |
| BsaI | GGTCTC | 2 cut(s) | 891, 1244 |
| BsaJI | CCNNGG | 6 cut(s) | 257, 266, 763, 764, 881, 1140 |
| BsaWI | WCCGGW | 1 cut(s) | 240 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 601, 631, 1193, 1223 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 504, 769, 770, 796, 899 |
| Bse1I | ACTGG | 3 cut(s) | 509, 757, 896 |
| BseAI | TCCGGA | 1 cut(s) | 240 |
| BseBI | CCWGG | 2 cut(s) | 765, 1289 |
| BseDI | CCNNGG | 6 cut(s) | 257, 266, 763, 764, 881, 1140 |
| BseGI | GGATG | 7 cut(s) | 355, 706, 970, 1123, 1129, 1212, 1315 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 504, 769, 770, 796, 899 |
| BseMII | CTCAG | 4 cut(s) | 656, 786, 836, 1239 |
| BseNI | ACTGG | 3 cut(s) | 509, 757, 896 |
| BseRI | GAGGAG | 1 cut(s) | 1308 |
| BseSI | GKGCMC | 1 cut(s) | 764 |
| BseXI | GCAGC | 5 cut(s) | 340, 495, 1114, 1246, 1300 |
| BsgI | GTGCAG | 1 cut(s) | 339 |
| Bsh1285I | CGRYCG | 1 cut(s) | 299 |
| BshFI | GGCC | 2 cut(s) | 271, 800 |
| BsiEI | CGRYCG | 1 cut(s) | 299 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1140 |
| BsiSI | CCGG | 2 cut(s) | 241, 1141 |
| BslFI | GGGAC | 1 cut(s) | 717 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 504, 769, 770, 796, 899 |
| BsmAI | GTCTC | 5 cut(s) | 6, 891, 1030, 1152, 1244 |
| BsmFI | GGGAC | 1 cut(s) | 717 |
| BsmI | GAATGC | 1 cut(s) | 511 |
| BsnI | GGCC | 2 cut(s) | 271, 800 |
| Bso31I | GGTCTC | 2 cut(s) | 891, 1244 |
| BsoBI | CYCGRG | 1 cut(s) | 1140 |
| Bsp1286I | GDGCHC | 1 cut(s) | 764 |
| Bsp13I | TCCGGA | 1 cut(s) | 240 |
| Bsp143I | GATC | 2 cut(s) | 1056, 1195 |
| BspACI | CCGC | 3 cut(s) | 856, 1012, 1121 |
| BspANI | GGCC | 2 cut(s) | 271, 800 |
| BspCNI | CTCAG | 4 cut(s) | 655, 787, 837, 1240 |
| BspEI | TCCGGA | 1 cut(s) | 240 |
| BspLI | GGNNCC | 1 cut(s) | 1293 |
| BspMAI | CTGCAG | 1 cut(s) | 1264 |
| BspMI | ACCTGC | 1 cut(s) | 208 |
| BspOI | GCTAGC | 2 cut(s) | 89, 789 |
| BspPI | GGATC | 1 cut(s) | 1064 |
| BspTNI | GGTCTC | 2 cut(s) | 891, 1244 |
| BsrI | ACTGG | 3 cut(s) | 509, 757, 896 |
| BssECI | CCNNGG | 6 cut(s) | 257, 266, 763, 764, 881, 1140 |
| BssMI | GATC | 2 cut(s) | 1056, 1195 |
| BssT1I | CCWWGG | 2 cut(s) | 257, 881 |
| Bst2UI | CCWGG | 2 cut(s) | 765, 1289 |
| Bst4CI | ACNGT | 1 cut(s) | 547 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1077 |
| BstC8I | GCNNGC | 2 cut(s) | 87, 787 |
| BstDEI | CTNAG | 4 cut(s) | 642, 795, 845, 1248 |
| BstF5I | GGATG | 7 cut(s) | 355, 706, 970, 1123, 1129, 1212, 1315 |
| BstH2I | RGCGCY | 1 cut(s) | 467 |
| BstHHI | GCGC | 1 cut(s) | 466 |
| BstKTI | GATC | 2 cut(s) | 1059, 1198 |
| BstMAI | GTCTC | 5 cut(s) | 6, 891, 1030, 1152, 1244 |
| BstMBI | GATC | 2 cut(s) | 1056, 1195 |
| BstMCI | CGRYCG | 1 cut(s) | 299 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 41, 91, 1077, 1127, 1136 |
| BstNI | CCWGG | 2 cut(s) | 765, 1289 |
| BstNSI | RCATGY | 2 cut(s) | 662, 719 |
| BstSCI | CCNGG | 4 cut(s) | 763, 1139, 1140, 1287 |
| BstSFI | CTRYAG | 1 cut(s) | 1260 |
| BstSLI | GKGCMC | 1 cut(s) | 764 |
| BstV1I | GCAGC | 5 cut(s) | 340, 495, 1114, 1246, 1300 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 764, 903 |
| BsuI | GTATCC | 1 cut(s) | 255 |
| BsuRI | GGCC | 2 cut(s) | 271, 800 |
| BtsCI | GGATG | 7 cut(s) | 355, 706, 970, 1123, 1129, 1212, 1315 |
| BtsIMutI | CAGTG | 1 cut(s) | 764 |
| BveI | ACCTGC | 1 cut(s) | 208 |
| Cac8I | GCNNGC | 2 cut(s) | 87, 787 |
| CfoI | GCGC | 1 cut(s) | 466 |
| Cfr13I | GGNCC | 1 cut(s) | 1325 |
| Cfr9I | CCCGGG | 1 cut(s) | 1140 |
| CviAII | CATG | 6 cut(s) | 659, 716, 804, 945, 1322, 1329 |
| DdeI | CTNAG | 4 cut(s) | 642, 795, 845, 1248 |
| DpnI | GATC | 2 cut(s) | 1058, 1197 |
| DpnII | GATC | 2 cut(s) | 1056, 1195 |
| DraIII | CACNNNGTG | 1 cut(s) | 1229 |
| Eco130I | CCWWGG | 2 cut(s) | 257, 881 |
| Eco147I | AGGCCT | 1 cut(s) | 800 |
| Eco31I | GGTCTC | 2 cut(s) | 891, 1244 |
| Eco47I | GGWCC | 1 cut(s) | 1325 |
| Eco47III | AGCGCT | 1 cut(s) | 465 |
| Eco88I | CYCGRG | 1 cut(s) | 1140 |
| EcoRI | GAATTC | 1 cut(s) | 940 |
| EcoRII | CCWGG | 2 cut(s) | 763, 1287 |
| EcoT14I | CCWWGG | 2 cut(s) | 257, 881 |
| ErhI | CCWWGG | 2 cut(s) | 257, 881 |
| FaeI | CATG | 6 cut(s) | 662, 719, 807, 948, 1325, 1332 |
| FaqI | GGGAC | 1 cut(s) | 717 |
| FatI | CATG | 6 cut(s) | 658, 715, 803, 944, 1321, 1328 |
| FauI | CCCGC | 1 cut(s) | 849 |
| FauNDI | CATATG | 1 cut(s) | 1113 |
| Fnu4HI | GCNGC | 5 cut(s) | 354, 509, 1128, 1260, 1314 |
| FokI | GGATG | 7 cut(s) | 362, 713, 977, 1130, 1136, 1199, 1322 |
| Fsp4HI | GCNGC | 5 cut(s) | 354, 509, 1128, 1260, 1314 |
| FspBI | CTAG | 8 cut(s) | 41, 86, 90, 138, 531, 786, 1151, 1157 |
| GlaI | GCGC | 1 cut(s) | 465 |
| GluI | GCNGC | 5 cut(s) | 354, 509, 1128, 1260, 1314 |
| GsuI | CTGGAG | 2 cut(s) | 879, 1310 |
| HaeII | RGCGCY | 1 cut(s) | 467 |
| HaeIII | GGCC | 2 cut(s) | 271, 800 |
| HapII | CCGG | 2 cut(s) | 241, 1141 |
| HhaI | GCGC | 1 cut(s) | 466 |
| Hin1II | CATG | 6 cut(s) | 662, 719, 807, 948, 1325, 1332 |
| Hin6I | GCGC | 1 cut(s) | 464 |
| HinP1I | GCGC | 1 cut(s) | 464 |
| HindIII | AAGCTT | 1 cut(s) | 1103 |
| HinfI | GANTC | 8 cut(s) | 338, 539, 704, 847, 1008, 1038, 1145, 1250 |
| HpaII | CCGG | 2 cut(s) | 241, 1141 |
| HphI | GGTGA | 2 cut(s) | 134, 236 |
| Hpy166II | GTNNAC | 1 cut(s) | 287 |
| Hpy188I | TCNGA | 8 cut(s) | 253, 337, 796, 852, 952, 1035, 1167, 1280 |
| Hpy188III | TCNNGA | 4 cut(s) | 11, 241, 1151, 1181 |
| Hpy8I | GTNNAC | 1 cut(s) | 287 |
| HpyAV | CCTTC | 1 cut(s) | 282 |
| HpyCH4III | ACNGT | 1 cut(s) | 547 |
| HpyCH4V | TGCA | 9 cut(s) | 356, 511, 601, 820, 1001, 1080, 1088, 1130, 1262 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 41, 91, 1077, 1127, 1136 |
| HpyF3I | CTNAG | 4 cut(s) | 642, 795, 845, 1248 |
| Hsp92II | CATG | 6 cut(s) | 662, 719, 807, 948, 1325, 1332 |
| HspAI | GCGC | 1 cut(s) | 464 |
| Kpn2I | TCCGGA | 1 cut(s) | 240 |
| Kzo9I | GATC | 2 cut(s) | 1056, 1195 |
| LmnI | GCTCC | 2 cut(s) | 1291, 1321 |
| Lsp1109I | GCAGC | 5 cut(s) | 340, 495, 1114, 1246, 1300 |
| LweI | GCATC | 7 cut(s) | 340, 376, 445, 829, 1108, 1114, 1300 |
| MaeI | CTAG | 8 cut(s) | 41, 86, 90, 138, 531, 786, 1151, 1157 |
| MaeIII | GTNAC | 6 cut(s) | 63, 310, 323, 427, 689, 1199 |
| MalI | GATC | 2 cut(s) | 1058, 1197 |
| MboI | GATC | 2 cut(s) | 1056, 1195 |
| MboII | GAAGA | 2 cut(s) | 612, 1100 |
| MhlI | GDGCHC | 1 cut(s) | 764 |
| MluCI | AATT | 7 cut(s) | 76, 232, 330, 391, 873, 940, 1029 |
| MlyI | GAGTC | 6 cut(s) | 713, 856, 1017, 1032, 1154, 1259 |
| MmeI | TCCRAC | 1 cut(s) | 1197 |
| MroI | TCCGGA | 1 cut(s) | 240 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1029 |
| MseI | TTAA | 5 cut(s) | 329, 501, 594, 741, 876 |
| MslI | CAYNNNNRTG | 2 cut(s) | 453, 1116 |
| MspI | CCGG | 2 cut(s) | 241, 1141 |
| MspR9I | CCNGG | 4 cut(s) | 765, 1141, 1142, 1289 |
| Mva1269I | GAATGC | 1 cut(s) | 511 |
| MvaI | CCWGG | 2 cut(s) | 765, 1289 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 41, 91, 1077, 1127, 1136 |
| NciI | CCSGG | 2 cut(s) | 1141, 1142 |
| NdeI | CATATG | 1 cut(s) | 1113 |
| NdeII | GATC | 2 cut(s) | 1056, 1195 |
| NheI | GCTAGC | 2 cut(s) | 85, 785 |
| NlaIII | CATG | 6 cut(s) | 662, 719, 807, 948, 1325, 1332 |
| NlaIV | GGNNCC | 1 cut(s) | 1293 |
| NmeAIII | GCCGAG | 2 cut(s) | 247, 749 |
| NmuCI | GTSAC | 4 cut(s) | 310, 323, 427, 1199 |
| NspI | RCATGY | 2 cut(s) | 662, 719 |
| PaqCI | CACCTGC | 1 cut(s) | 208 |
| PasI | CCCWGGG | 1 cut(s) | 764 |
| PceI | AGGCCT | 1 cut(s) | 800 |
| PctI | GAATGC | 1 cut(s) | 511 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1029 |
| PfeI | GAWTC | 2 cut(s) | 338, 539 |
| PflFI | GACNNNGTC | 2 cut(s) | 846, 1041 |
| PkrI | GCNGC | 5 cut(s) | 355, 510, 1129, 1261, 1315 |
| PleI | GAGTC | 6 cut(s) | 712, 855, 1016, 1032, 1153, 1258 |
| PpsI | GAGTC | 6 cut(s) | 712, 855, 1016, 1032, 1153, 1258 |
| Psp6I | CCWGG | 2 cut(s) | 763, 1287 |
| PspGI | CCWGG | 2 cut(s) | 763, 1287 |
| PspN4I | GGNNCC | 1 cut(s) | 1293 |
| PspPI | GGNCC | 1 cut(s) | 1325 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 564, 596 |
| PstI | CTGCAG | 1 cut(s) | 1264 |
| PsyI | GACNNNGTC | 2 cut(s) | 846, 1041 |
| RseI | CAYNNNNRTG | 2 cut(s) | 453, 1116 |
| SaqAI | TTAA | 5 cut(s) | 329, 501, 594, 741, 876 |
| SatI | GCNGC | 5 cut(s) | 354, 509, 1128, 1260, 1314 |
| Sau3AI | GATC | 2 cut(s) | 1056, 1195 |
| Sau96I | GGNCC | 1 cut(s) | 1325 |
| SchI | GAGTC | 6 cut(s) | 713, 856, 1017, 1032, 1154, 1259 |
| ScrFI | CCNGG | 4 cut(s) | 765, 1141, 1142, 1289 |
| SduI | GDGCHC | 1 cut(s) | 764 |
| SfaNI | GCATC | 7 cut(s) | 340, 376, 445, 829, 1108, 1114, 1300 |
| SfcI | CTRYAG | 1 cut(s) | 1260 |
| SinI | GGWCC | 1 cut(s) | 1325 |
| SmaI | CCCGGG | 1 cut(s) | 1142 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 453, 1116 |
| SmlI | CTYRAG | 2 cut(s) | 412, 492 |
| SmoI | CTYRAG | 2 cut(s) | 412, 492 |
| Sse9I | AATT | 7 cut(s) | 76, 232, 330, 391, 873, 940, 1029 |
| SseBI | AGGCCT | 1 cut(s) | 800 |
| SsiI | CCGC | 3 cut(s) | 856, 1012, 1121 |
| SspI | AATATT | 1 cut(s) | 370 |
| SspMI | CTAG | 8 cut(s) | 41, 86, 90, 138, 531, 786, 1151, 1157 |
| StuI | AGGCCT | 1 cut(s) | 800 |
| StyD4I | CCNGG | 4 cut(s) | 763, 1139, 1140, 1287 |
| StyI | CCWWGG | 2 cut(s) | 257, 881 |
| TaaI | ACNGT | 1 cut(s) | 547 |
| TaqI | TCGA | 3 cut(s) | 10, 106, 295 |
| TaqII | GACCGA | 1 cut(s) | 313 |
| TasI | AATT | 7 cut(s) | 76, 232, 330, 391, 873, 940, 1029 |
| TfiI | GAWTC | 2 cut(s) | 338, 539 |
| Tru1I | TTAA | 5 cut(s) | 329, 501, 594, 741, 876 |
| Tru9I | TTAA | 5 cut(s) | 329, 501, 594, 741, 876 |
| TscAI | CASTG | 1 cut(s) | 764 |
| TseFI | GTSAC | 4 cut(s) | 310, 323, 427, 1199 |
| TseI | GCWGC | 5 cut(s) | 353, 508, 1127, 1259, 1313 |
| Tsp45I | GTSAC | 4 cut(s) | 310, 323, 427, 1199 |
| TspDTI | ATGAA | 3 cut(s) | 933, 1038, 1100 |
| TspGWI | ACGGA | 2 cut(s) | 713, 984 |
| TspMI | CCCGGG | 1 cut(s) | 1140 |
| TspRI | CASTG | 1 cut(s) | 764 |
| Tth111I | GACNNNGTC | 2 cut(s) | 846, 1041 |
| VpaK11BI | GGWCC | 1 cut(s) | 1325 |
| XapI | RAATTY | 3 cut(s) | 76, 391, 940 |
| XbaI | TCTAGA | 1 cut(s) | 1150 |
| XceI | RCATGY | 2 cut(s) | 662, 719 |
| XmaI | CCCGGG | 1 cut(s) | 1140 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1029 |
| XspI | CTAG | 8 cut(s) | 41, 86, 90, 138, 531, 786, 1151, 1157 |