Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 86 - 157 | 1.5e-12 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| Acc36I | ACCTGC | 1 cut(s) | 178 |
| AccI | GTMKAC | 2 cut(s) | 604, 925 |
| AccII | CGCG | 2 cut(s) | 204, 1096 |
| AciI | CCGC | 7 cut(s) | 177, 204, 212, 291, 656, 975, 982 |
| AcoI | YGGCCR | 1 cut(s) | 1046 |
| AcsI | RAATTY | 2 cut(s) | 94, 987 |
| AcyI | GRCGYC | 1 cut(s) | 819 |
| AfaI | GTAC | 1 cut(s) | 272 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 727 |
| AflIII | ACRYGT | 1 cut(s) | 1094 |
| AgsI | TTSAA | 6 cut(s) | 422, 461, 493, 866, 874, 913 |
| AjnI | CCWGG | 1 cut(s) | 622 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 347, 379, 568, 600 |
| AleI | CACNNNNGTG | 1 cut(s) | 1074 |
| AluBI | AGCT | 4 cut(s) | 49, 598, 909, 1007 |
| AluI | AGCT | 4 cut(s) | 49, 598, 909, 1007 |
| Alw26I | GTCTC | 4 cut(s) | 642, 708, 749, 1085 |
| Ama87I | CYCGRG | 2 cut(s) | 932, 952 |
| AoxI | GGCC | 4 cut(s) | 248, 288, 620, 1046 |
| ApeKI | GCWGC | 3 cut(s) | 334, 695, 1007 |
| ApoI | RAATTY | 2 cut(s) | 94, 987 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 989 |
| AspLEI | GCGC | 2 cut(s) | 87, 738 |
| AspS9I | GGNCC | 5 cut(s) | 248, 288, 471, 588, 620 |
| AsuC2I | CCSGG | 1 cut(s) | 1050 |
| AsuHPI | GGTGA | 1 cut(s) | 322 |
| AvaI | CYCGRG | 2 cut(s) | 932, 952 |
| AvaII | GGWCC | 2 cut(s) | 471, 588 |
| BauI | CACGAG | 1 cut(s) | 686 |
| BbvI | GCAGC | 3 cut(s) | 321, 707, 994 |
| BccI | CCATC | 1 cut(s) | 538 |
| BceAI | ACGGC | 3 cut(s) | 365, 944, 1041 |
| BciT130I | CCWGG | 1 cut(s) | 624 |
| BcnI | CCSGG | 1 cut(s) | 1050 |
| BcoDI | GTCTC | 4 cut(s) | 642, 708, 749, 1085 |
| BfaI | CTAG | 2 cut(s) | 237, 521 |
| BfmI | CTRYAG | 1 cut(s) | 571 |
| BfoI | RGCGCY | 1 cut(s) | 88 |
| BfuAI | ACCTGC | 1 cut(s) | 178 |
| BisI | GCNGC | 4 cut(s) | 291, 335, 696, 1008 |
| BlsI | GCNGC | 4 cut(s) | 292, 336, 697, 1009 |
| Bme1390I | CCNGG | 2 cut(s) | 624, 1050 |
| Bme18I | GGWCC | 2 cut(s) | 471, 588 |
| BmeT110I | CYCGRG | 2 cut(s) | 932, 952 |
| BmgT120I | GGNCC | 5 cut(s) | 248, 288, 471, 588, 620 |
| BmiI | GGNNCC | 1 cut(s) | 249 |
| BmrFI | CCNGG | 2 cut(s) | 624, 1050 |
| BmsI | GCATC | 3 cut(s) | 242, 415, 781 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 46, 78 |
| Bpu10I | CCTNAGC | 1 cut(s) | 42 |
| BpuEI | CTTGAG | 5 cut(s) | 71, 89, 109, 690, 987 |
| BpuMI | CCSGG | 1 cut(s) | 1050 |
| BsaHI | GRCGYC | 1 cut(s) | 819 |
| BsaJI | CCNNGG | 2 cut(s) | 363, 1049 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 727 |
| Bse118I | RCCGGY | 2 cut(s) | 250, 1071 |
| Bse1I | ACTGG | 1 cut(s) | 278 |
| Bse3DI | GCAATG | 2 cut(s) | 107, 428 |
| BseBI | CCWGG | 1 cut(s) | 624 |
| BseDI | CCNNGG | 2 cut(s) | 363, 1049 |
| BseGI | GGATG | 4 cut(s) | 553, 639, 781, 796 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 727 |
| BseMI | GCAATG | 2 cut(s) | 107, 428 |
| BseMII | CTCAG | 2 cut(s) | 613, 717 |
| BseNI | ACTGG | 1 cut(s) | 278 |
| BseRI | GAGGAG | 4 cut(s) | 200, 1097, 1100, 1103 |
| BseX3I | CGGCCG | 1 cut(s) | 1046 |
| BseXI | GCAGC | 3 cut(s) | 321, 707, 994 |
| BseYI | CCCAGC | 1 cut(s) | 594 |
| BsgI | GTGCAG | 2 cut(s) | 527, 948 |
| Bsh1236I | CGCG | 2 cut(s) | 204, 1096 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1049 |
| BshFI | GGCC | 4 cut(s) | 250, 290, 622, 1048 |
| BsiEI | CGRYCG | 1 cut(s) | 1049 |
| BsiHKCI | CYCGRG | 2 cut(s) | 932, 952 |
| BsiSI | CCGG | 3 cut(s) | 251, 1049, 1072 |
| BslFI | GGGAC | 1 cut(s) | 811 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 727 |
| BsmAI | GTCTC | 4 cut(s) | 642, 708, 749, 1085 |
| BsmBI | CGTCTC | 1 cut(s) | 1085 |
| BsmFI | GGGAC | 1 cut(s) | 811 |
| BsmI | GAATGC | 1 cut(s) | 499 |
| BsnI | GGCC | 4 cut(s) | 250, 290, 622, 1048 |
| BsoBI | CYCGRG | 2 cut(s) | 932, 952 |
| Bsp143I | GATC | 2 cut(s) | 189, 314 |
| BspACI | CCGC | 7 cut(s) | 177, 204, 212, 291, 656, 975, 982 |
| BspANI | GGCC | 4 cut(s) | 250, 290, 622, 1048 |
| BspCNI | CTCAG | 2 cut(s) | 612, 718 |
| BspFNI | CGCG | 2 cut(s) | 204, 1096 |
| BspLI | GGNNCC | 1 cut(s) | 249 |
| BspMI | ACCTGC | 1 cut(s) | 178 |
| BsrDI | GCAATG | 2 cut(s) | 107, 428 |
| BsrFI | RCCGGY | 2 cut(s) | 250, 1071 |
| BsrI | ACTGG | 1 cut(s) | 278 |
| BssAI | RCCGGY | 2 cut(s) | 250, 1071 |
| BssECI | CCNNGG | 2 cut(s) | 363, 1049 |
| BssMI | GATC | 2 cut(s) | 189, 314 |
| BssNI | GRCGYC | 1 cut(s) | 819 |
| BssSI | CACGAG | 1 cut(s) | 686 |
| BssT1I | CCWWGG | 1 cut(s) | 363 |
| Bst2BI | CACGAG | 1 cut(s) | 686 |
| Bst2UI | CCWGG | 1 cut(s) | 624 |
| Bst4CI | ACNGT | 1 cut(s) | 1015 |
| Bst6I | CTCTTC | 1 cut(s) | 69 |
| BstACI | GRCGYC | 1 cut(s) | 819 |
| BstC8I | GCNNGC | 1 cut(s) | 940 |
| BstDEI | CTNAG | 4 cut(s) | 42, 599, 726, 806 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 725 |
| BstF5I | GGATG | 4 cut(s) | 553, 639, 781, 796 |
| BstFNI | CGCG | 2 cut(s) | 204, 1096 |
| BstH2I | RGCGCY | 1 cut(s) | 88 |
| BstHHI | GCGC | 2 cut(s) | 87, 738 |
| BstKTI | GATC | 2 cut(s) | 192, 317 |
| BstMAI | GTCTC | 4 cut(s) | 642, 708, 749, 1085 |
| BstMBI | GATC | 2 cut(s) | 189, 314 |
| BstMCI | CGRYCG | 1 cut(s) | 1049 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 948 |
| BstNI | CCWGG | 1 cut(s) | 624 |
| BstNSI | RCATGY | 1 cut(s) | 437 |
| BstSCI | CCNGG | 2 cut(s) | 622, 1048 |
| BstSFI | CTRYAG | 1 cut(s) | 571 |
| BstUI | CGCG | 2 cut(s) | 204, 1096 |
| BstV1I | GCAGC | 3 cut(s) | 321, 707, 994 |
| BstZI | CGGCCG | 1 cut(s) | 1046 |
| BsuRI | GGCC | 4 cut(s) | 250, 290, 622, 1048 |
| BtsCI | GGATG | 4 cut(s) | 553, 639, 781, 796 |
| BveI | ACCTGC | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 1 cut(s) | 940 |
| CfoI | GCGC | 2 cut(s) | 87, 738 |
| Cfr10I | RCCGGY | 2 cut(s) | 250, 1071 |
| Cfr13I | GGNCC | 5 cut(s) | 248, 288, 471, 588, 620 |
| CseI | GACGC | 2 cut(s) | 808, 1085 |
| Csp6I | GTAC | 1 cut(s) | 271 |
| CviAII | CATG | 5 cut(s) | 434, 447, 563, 700, 823 |
| CviQI | GTAC | 1 cut(s) | 271 |
| DdeI | CTNAG | 4 cut(s) | 42, 599, 726, 806 |
| DpnI | GATC | 2 cut(s) | 191, 316 |
| DpnII | GATC | 2 cut(s) | 189, 314 |
| DraI | TTTAAA | 1 cut(s) | 442 |
| EaeI | YGGCCR | 1 cut(s) | 1046 |
| EagI | CGGCCG | 1 cut(s) | 1046 |
| Eam1104I | CTCTTC | 1 cut(s) | 69 |
| EarI | CTCTTC | 1 cut(s) | 69 |
| EciI | GGCGGA | 1 cut(s) | 990 |
| EclXI | CGGCCG | 1 cut(s) | 1046 |
| Eco130I | CCWWGG | 1 cut(s) | 363 |
| Eco47I | GGWCC | 2 cut(s) | 471, 588 |
| Eco52I | CGGCCG | 1 cut(s) | 1046 |
| Eco88I | CYCGRG | 2 cut(s) | 932, 952 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 725 |
| EcoO109I | RGGNCCY | 1 cut(s) | 620 |
| EcoRII | CCWGG | 1 cut(s) | 622 |
| EcoT14I | CCWWGG | 1 cut(s) | 363 |
| EcoT22I | ATGCAT | 1 cut(s) | 430 |
| ErhI | CCWWGG | 1 cut(s) | 363 |
| Esp3I | CGTCTC | 1 cut(s) | 1085 |
| FaeI | CATG | 5 cut(s) | 437, 450, 566, 703, 826 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 347, 379 |
| FaqI | GGGAC | 1 cut(s) | 811 |
| FatI | CATG | 5 cut(s) | 433, 446, 562, 699, 822 |
| FauI | CCCGC | 1 cut(s) | 197 |
| FblI | GTMKAC | 2 cut(s) | 604, 925 |
| Fnu4HI | GCNGC | 4 cut(s) | 291, 335, 696, 1008 |
| FokI | GGATG | 4 cut(s) | 560, 626, 788, 803 |
| Fsp4HI | GCNGC | 4 cut(s) | 291, 335, 696, 1008 |
| FspBI | CTAG | 2 cut(s) | 237, 521 |
| GlaI | GCGC | 2 cut(s) | 86, 737 |
| GluI | GCNGC | 4 cut(s) | 291, 335, 696, 1008 |
| GsaI | CCCAGC | 1 cut(s) | 598 |
| HaeII | RGCGCY | 1 cut(s) | 88 |
| HaeIII | GGCC | 4 cut(s) | 250, 290, 622, 1048 |
| HapII | CCGG | 3 cut(s) | 251, 1049, 1072 |
| HgaI | GACGC | 2 cut(s) | 808, 1085 |
| HhaI | GCGC | 2 cut(s) | 87, 738 |
| Hin1I | GRCGYC | 1 cut(s) | 819 |
| Hin1II | CATG | 5 cut(s) | 437, 450, 566, 703, 826 |
| Hin6I | GCGC | 2 cut(s) | 85, 736 |
| HinP1I | GCGC | 2 cut(s) | 85, 736 |
| HindIII | AAGCTT | 1 cut(s) | 907 |
| HinfI | GANTC | 1 cut(s) | 757 |
| HpaII | CCGG | 3 cut(s) | 251, 1049, 1072 |
| HphI | GGTGA | 1 cut(s) | 322 |
| Hpy166II | GTNNAC | 4 cut(s) | 591, 605, 926, 1018 |
| Hpy188I | TCNGA | 4 cut(s) | 124, 306, 647, 727 |
| Hpy188III | TCNNGA | 6 cut(s) | 68, 521, 688, 707, 773, 994 |
| Hpy8I | GTNNAC | 4 cut(s) | 591, 605, 926, 1018 |
| Hpy99I | CGWCG | 4 cut(s) | 749, 883, 1067, 1101 |
| HpyAV | CCTTC | 5 cut(s) | 129, 202, 301, 880, 907 |
| HpyCH4III | ACNGT | 1 cut(s) | 1015 |
| HpyCH4IV | ACGT | 1 cut(s) | 453 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 948 |
| HpyF3I | CTNAG | 4 cut(s) | 42, 599, 726, 806 |
| HpySE526I | ACGT | 1 cut(s) | 453 |
| Hsp92I | GRCGYC | 1 cut(s) | 819 |
| Hsp92II | CATG | 5 cut(s) | 437, 450, 566, 703, 826 |
| HspAI | GCGC | 2 cut(s) | 85, 736 |
| Kzo9I | GATC | 2 cut(s) | 189, 314 |
| LmnI | GCTCC | 1 cut(s) | 46 |
| Lsp1109I | GCAGC | 3 cut(s) | 321, 707, 994 |
| LweI | GCATC | 3 cut(s) | 242, 415, 781 |
| MaeI | CTAG | 2 cut(s) | 237, 521 |
| MaeII | ACGT | 1 cut(s) | 453 |
| MaeIII | GTNAC | 2 cut(s) | 797, 1055 |
| MalI | GATC | 2 cut(s) | 191, 316 |
| MboI | GATC | 2 cut(s) | 189, 314 |
| MboII | GAAGA | 5 cut(s) | 56, 367, 434, 536, 914 |
| MfeI | CAATTG | 2 cut(s) | 35, 583 |
| MluI | ACGCGT | 1 cut(s) | 1094 |
| MlyI | GAGTC | 1 cut(s) | 751 |
| Mph1103I | ATGCAT | 1 cut(s) | 430 |
| MroXI | GAANNNNTTC | 1 cut(s) | 989 |
| MseI | TTAA | 4 cut(s) | 441, 501, 846, 947 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1074 |
| MspI | CCGG | 3 cut(s) | 251, 1049, 1072 |
| MspR9I | CCNGG | 2 cut(s) | 624, 1050 |
| MunI | CAATTG | 2 cut(s) | 35, 583 |
| Mva1269I | GAATGC | 1 cut(s) | 499 |
| MvaI | CCWGG | 1 cut(s) | 624 |
| MvnI | CGCG | 2 cut(s) | 204, 1096 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 948 |
| NciI | CCSGG | 1 cut(s) | 1050 |
| NdeII | GATC | 2 cut(s) | 189, 314 |
| NlaIII | CATG | 5 cut(s) | 437, 450, 566, 703, 826 |
| NlaIV | GGNNCC | 1 cut(s) | 249 |
| NmuCI | GTSAC | 1 cut(s) | 1055 |
| NsiI | ATGCAT | 1 cut(s) | 430 |
| NspI | RCATGY | 1 cut(s) | 437 |
| OliI | CACNNNNGTG | 1 cut(s) | 1074 |
| PaeR7I | CTCGAG | 1 cut(s) | 932 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1051 |
| PctI | GAATGC | 1 cut(s) | 499 |
| PdmI | GAANNNNTTC | 1 cut(s) | 989 |
| PkrI | GCNGC | 4 cut(s) | 292, 336, 697, 1009 |
| PleI | GAGTC | 1 cut(s) | 751 |
| PpsI | GAGTC | 1 cut(s) | 751 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp6I | CCWGG | 1 cut(s) | 622 |
| PspFI | CCCAGC | 1 cut(s) | 594 |
| PspGI | CCWGG | 1 cut(s) | 622 |
| PspN4I | GGNNCC | 1 cut(s) | 249 |
| PspPI | GGNCC | 5 cut(s) | 248, 288, 471, 588, 620 |
| PspXI | VCTCGAGB | 1 cut(s) | 932 |
| RsaI | GTAC | 1 cut(s) | 272 |
| RsaNI | GTAC | 1 cut(s) | 271 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1074 |
| SaqAI | TTAA | 4 cut(s) | 441, 501, 846, 947 |
| SatI | GCNGC | 4 cut(s) | 291, 335, 696, 1008 |
| Sau3AI | GATC | 2 cut(s) | 189, 314 |
| Sau96I | GGNCC | 5 cut(s) | 248, 288, 471, 588, 620 |
| SchI | GAGTC | 1 cut(s) | 751 |
| ScrFI | CCNGG | 2 cut(s) | 624, 1050 |
| SfaNI | GCATC | 3 cut(s) | 242, 415, 781 |
| SfcI | CTRYAG | 1 cut(s) | 571 |
| Sfr274I | CTCGAG | 1 cut(s) | 932 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1071 |
| SinI | GGWCC | 2 cut(s) | 471, 588 |
| SlaI | CTCGAG | 1 cut(s) | 932 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1074 |
| SmlI | CTYRAG | 6 cut(s) | 50, 68, 88, 705, 932, 1002 |
| SmoI | CTYRAG | 6 cut(s) | 50, 68, 88, 705, 932, 1002 |
| SsiI | CCGC | 7 cut(s) | 177, 204, 212, 291, 656, 975, 982 |
| SspI | AATATT | 1 cut(s) | 298 |
| SspMI | CTAG | 2 cut(s) | 237, 521 |
| StyD4I | CCNGG | 2 cut(s) | 622, 1048 |
| StyI | CCWWGG | 1 cut(s) | 363 |
| TaaI | ACNGT | 1 cut(s) | 1015 |
| TaiI | ACGT | 1 cut(s) | 456 |
| TaqI | TCGA | 4 cut(s) | 192, 744, 814, 933 |
| TauI | GCSGC | 1 cut(s) | 293 |
| Tru1I | TTAA | 4 cut(s) | 441, 501, 846, 947 |
| Tru9I | TTAA | 4 cut(s) | 441, 501, 846, 947 |
| TseFI | GTSAC | 1 cut(s) | 1055 |
| TseI | GCWGC | 3 cut(s) | 334, 695, 1007 |
| Tsp45I | GTSAC | 1 cut(s) | 1055 |
| TspDTI | ATGAA | 1 cut(s) | 368 |
| TspGWI | ACGGA | 2 cut(s) | 239, 867 |
| VpaK11BI | GGWCC | 2 cut(s) | 471, 588 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 725 |
| XapI | RAATTY | 2 cut(s) | 94, 987 |
| XbaI | TCTAGA | 1 cut(s) | 520 |
| XceI | RCATGY | 1 cut(s) | 437 |
| XhoI | CTCGAG | 1 cut(s) | 932 |
| XmiI | GTMKAC | 2 cut(s) | 604, 925 |
| XmnI | GAANNNNTTC | 1 cut(s) | 989 |
| XspI | CTAG | 2 cut(s) | 237, 521 |
| Zsp2I | ATGCAT | 1 cut(s) | 430 |