Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ThiS | PF02597 | 29 - 105 | 2.4e-14 | ThiS family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 308 |
| AclWI | GGATC | 2 cut(s) | 65, 205 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AfaI | GTAC | 2 cut(s) | 157, 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 105, 308 |
| AgsI | TTSAA | 1 cut(s) | 10 |
| AjnI | CCWGG | 1 cut(s) | 98 |
| AluBI | AGCT | 3 cut(s) | 161, 181, 201 |
| AluI | AGCT | 3 cut(s) | 161, 181, 201 |
| AlwI | GGATC | 2 cut(s) | 65, 205 |
| Ama87I | CYCGRG | 1 cut(s) | 105 |
| AoxI | GGCC | 2 cut(s) | 118, 288 |
| AspS9I | GGNCC | 2 cut(s) | 40, 109 |
| AvaI | CYCGRG | 1 cut(s) | 105 |
| AvaII | GGWCC | 2 cut(s) | 40, 109 |
| BalI | TGGCCA | 1 cut(s) | 290 |
| BanII | GRGCYC | 1 cut(s) | 106 |
| BciT130I | CCWGG | 1 cut(s) | 100 |
| Bme1390I | CCNGG | 1 cut(s) | 100 |
| Bme18I | GGWCC | 2 cut(s) | 40, 109 |
| BmeT110I | CYCGRG | 1 cut(s) | 105 |
| BmgT120I | GGNCC | 2 cut(s) | 40, 109 |
| BmiI | GGNNCC | 2 cut(s) | 42, 110 |
| BmrFI | CCNGG | 1 cut(s) | 100 |
| BmsI | GCATC | 1 cut(s) | 120 |
| BsaJI | CCNNGG | 2 cut(s) | 99, 214 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 105, 308 |
| Bse1I | ACTGG | 1 cut(s) | 121 |
| BseBI | CCWGG | 1 cut(s) | 100 |
| BseDI | CCNNGG | 2 cut(s) | 99, 214 |
| BseGI | GGATG | 1 cut(s) | 286 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 105, 308 |
| BseMII | CTCAG | 1 cut(s) | 246 |
| BseNI | ACTGG | 1 cut(s) | 121 |
| BshFI | GGCC | 2 cut(s) | 120, 290 |
| BsiHKCI | CYCGRG | 1 cut(s) | 105 |
| BslFI | GGGAC | 1 cut(s) | 122 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 105, 308 |
| BsmFI | GGGAC | 1 cut(s) | 122 |
| BsnI | GGCC | 2 cut(s) | 120, 290 |
| BsoBI | CYCGRG | 1 cut(s) | 105 |
| Bsp1286I | GDGCHC | 1 cut(s) | 106 |
| Bsp143I | GATC | 2 cut(s) | 57, 210 |
| BspANI | GGCC | 2 cut(s) | 120, 290 |
| BspCNI | CTCAG | 1 cut(s) | 247 |
| BspLI | GGNNCC | 2 cut(s) | 42, 110 |
| BspPI | GGATC | 2 cut(s) | 65, 205 |
| BsrI | ACTGG | 1 cut(s) | 121 |
| BssECI | CCNNGG | 2 cut(s) | 99, 214 |
| BssMI | GATC | 2 cut(s) | 57, 210 |
| Bst2UI | CCWGG | 1 cut(s) | 100 |
| Bst6I | CTCTTC | 3 cut(s) | 12, 201, 237 |
| BstDEI | CTNAG | 2 cut(s) | 51, 255 |
| BstDSI | CCRYGG | 1 cut(s) | 214 |
| BstF5I | GGATG | 1 cut(s) | 286 |
| BstKTI | GATC | 2 cut(s) | 60, 213 |
| BstMBI | GATC | 2 cut(s) | 57, 210 |
| BstNI | CCWGG | 1 cut(s) | 100 |
| BstSCI | CCNGG | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 210 |
| BstYI | RGATCY | 1 cut(s) | 210 |
| BsuRI | GGCC | 2 cut(s) | 120, 290 |
| BtgI | CCRYGG | 1 cut(s) | 214 |
| BtsCI | GGATG | 1 cut(s) | 286 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 313 |
| Cfr13I | GGNCC | 2 cut(s) | 40, 109 |
| Csp6I | GTAC | 2 cut(s) | 156, 247 |
| CviAII | CATG | 1 cut(s) | 223 |
| CviJI | RGCY | 7 cut(s) | 104, 120, 161, 181, 201, 290, 315 |
| CviKI_1 | RGCY | 7 cut(s) | 104, 120, 161, 181, 201, 290, 315 |
| CviQI | GTAC | 2 cut(s) | 156, 247 |
| DdeI | CTNAG | 2 cut(s) | 51, 255 |
| DpnI | GATC | 2 cut(s) | 59, 212 |
| DpnII | GATC | 2 cut(s) | 57, 210 |
| DraI | TTTAAA | 1 cut(s) | 174 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| Eam1104I | CTCTTC | 3 cut(s) | 12, 201, 237 |
| EarI | CTCTTC | 3 cut(s) | 12, 201, 237 |
| Eco24I | GRGCYC | 1 cut(s) | 106 |
| Eco47I | GGWCC | 2 cut(s) | 40, 109 |
| Eco88I | CYCGRG | 1 cut(s) | 105 |
| EcoO109I | RGGNCCY | 1 cut(s) | 109 |
| EcoRII | CCWGG | 1 cut(s) | 98 |
| EcoT38I | GRGCYC | 1 cut(s) | 106 |
| FaeI | CATG | 1 cut(s) | 226 |
| FaiI | YATR | 3 cut(s) | 38, 224, 296 |
| FaqI | GGGAC | 1 cut(s) | 122 |
| FatI | CATG | 1 cut(s) | 222 |
| FokI | GGATG | 1 cut(s) | 293 |
| FriOI | GRGCYC | 1 cut(s) | 106 |
| HaeIII | GGCC | 2 cut(s) | 120, 290 |
| Hin1II | CATG | 1 cut(s) | 226 |
| HinfI | GANTC | 2 cut(s) | 65, 257 |
| Hpy166II | GTNNAC | 1 cut(s) | 249 |
| Hpy188I | TCNGA | 1 cut(s) | 198 |
| Hpy188III | TCNNGA | 1 cut(s) | 107 |
| Hpy8I | GTNNAC | 1 cut(s) | 249 |
| HpyAV | CCTTC | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 1 cut(s) | 222 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 255 |
| Hsp92II | CATG | 1 cut(s) | 226 |
| Kzo9I | GATC | 2 cut(s) | 57, 210 |
| LpnPI | CCDG | 4 cut(s) | 85, 102, 112, 135 |
| LweI | GCATC | 1 cut(s) | 120 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 2 cut(s) | 59, 212 |
| MboI | GATC | 2 cut(s) | 57, 210 |
| MboII | GAAGA | 3 cut(s) | 29, 218, 254 |
| MflI | RGATCY | 1 cut(s) | 210 |
| MhlI | GDGCHC | 1 cut(s) | 106 |
| MlsI | TGGCCA | 1 cut(s) | 290 |
| MluNI | TGGCCA | 1 cut(s) | 290 |
| MlyI | GAGTC | 1 cut(s) | 266 |
| MnlI | CCTC | 4 cut(s) | 122, 131, 133, 309 |
| Mox20I | TGGCCA | 1 cut(s) | 290 |
| MscI | TGGCCA | 1 cut(s) | 290 |
| MseI | TTAA | 5 cut(s) | 24, 75, 173, 237, 270 |
| MslI | CAYNNNNRTG | 1 cut(s) | 128 |
| Msp20I | TGGCCA | 1 cut(s) | 290 |
| MspR9I | CCNGG | 1 cut(s) | 100 |
| MvaI | CCWGG | 1 cut(s) | 100 |
| NdeII | GATC | 2 cut(s) | 57, 210 |
| NlaIII | CATG | 1 cut(s) | 226 |
| NlaIV | GGNNCC | 2 cut(s) | 42, 110 |
| PfeI | GAWTC | 1 cut(s) | 65 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 308 |
| PleI | GAGTC | 1 cut(s) | 265 |
| PpsI | GAGTC | 1 cut(s) | 265 |
| PpuMI | RGGWCCY | 1 cut(s) | 109 |
| Psp5II | RGGWCCY | 1 cut(s) | 109 |
| Psp6I | CCWGG | 1 cut(s) | 98 |
| PspGI | CCWGG | 1 cut(s) | 98 |
| PspN4I | GGNNCC | 2 cut(s) | 42, 110 |
| PspPI | GGNCC | 2 cut(s) | 40, 109 |
| PspPPI | RGGWCCY | 1 cut(s) | 109 |
| PsuI | RGATCY | 1 cut(s) | 210 |
| RsaI | GTAC | 2 cut(s) | 157, 248 |
| RsaNI | GTAC | 2 cut(s) | 156, 247 |
| RseI | CAYNNNNRTG | 1 cut(s) | 128 |
| SaqAI | TTAA | 5 cut(s) | 24, 75, 173, 237, 270 |
| Sau3AI | GATC | 2 cut(s) | 57, 210 |
| Sau96I | GGNCC | 2 cut(s) | 40, 109 |
| SchI | GAGTC | 1 cut(s) | 266 |
| ScrFI | CCNGG | 1 cut(s) | 100 |
| SduI | GDGCHC | 1 cut(s) | 106 |
| SetI | ASST | 7 cut(s) | 87, 114, 144, 163, 183, 203, 301 |
| SfaNI | GCATC | 1 cut(s) | 120 |
| SinI | GGWCC | 2 cut(s) | 40, 109 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 128 |
| StyD4I | CCNGG | 1 cut(s) | 98 |
| TatI | WGTACW | 2 cut(s) | 155, 246 |
| TfiI | GAWTC | 1 cut(s) | 65 |
| Tru1I | TTAA | 5 cut(s) | 24, 75, 173, 237, 270 |
| Tru9I | TTAA | 5 cut(s) | 24, 75, 173, 237, 270 |
| TscAI | CASTG | 2 cut(s) | 121, 313 |
| TspDTI | ATGAA | 2 cut(s) | 57, 95 |
| TspGWI | ACGGA | 1 cut(s) | 203 |
| TspRI | CASTG | 2 cut(s) | 121, 313 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 308 |
| VpaK11BI | GGWCC | 2 cut(s) | 40, 109 |