Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 18 - 75 | 1.1e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 90 |
| AclI | AACGTT | 1 cut(s) | 54 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AfaI | GTAC | 1 cut(s) | 149 |
| AluBI | AGCT | 2 cut(s) | 134, 215 |
| AluI | AGCT | 2 cut(s) | 134, 215 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| AlwI | GGATC | 1 cut(s) | 12 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| ApeKI | GCWGC | 1 cut(s) | 134 |
| AsuHPI | GGTGA | 1 cut(s) | 212 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| BauI | CACGAG | 1 cut(s) | 108 |
| BbvI | GCAGC | 1 cut(s) | 121 |
| BccI | CCATC | 1 cut(s) | 53 |
| BceAI | ACGGC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 1 cut(s) | 144 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 197 |
| BisI | GCNGC | 1 cut(s) | 135 |
| BlsI | GCNGC | 1 cut(s) | 136 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BsaI | GGTCTC | 1 cut(s) | 32 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 84, 114 |
| BseXI | GCAGC | 1 cut(s) | 121 |
| BseYI | CCCAGC | 1 cut(s) | 200 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsmI | GAATGC | 1 cut(s) | 65 |
| Bso31I | GGTCTC | 1 cut(s) | 32 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp143I | GATC | 1 cut(s) | 4 |
| BspACI | CCGC | 1 cut(s) | 90 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspTNI | GGTCTC | 1 cut(s) | 32 |
| BssMI | GATC | 1 cut(s) | 4 |
| BssSI | CACGAG | 1 cut(s) | 108 |
| Bst2BI | CACGAG | 1 cut(s) | 108 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 1 cut(s) | 159 |
| BstKTI | GATC | 1 cut(s) | 7 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 1 cut(s) | 4 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 167, 197 |
| BstNSI | RCATGY | 1 cut(s) | 161 |
| BstV1I | GCAGC | 1 cut(s) | 121 |
| Cac8I | GCNNGC | 1 cut(s) | 159 |
| Csp6I | GTAC | 1 cut(s) | 148 |
| CviAII | CATG | 3 cut(s) | 8, 151, 158 |
| CviJI | RGCY | 4 cut(s) | 134, 191, 200, 215 |
| CviKI_1 | RGCY | 4 cut(s) | 134, 191, 200, 215 |
| CviQI | GTAC | 1 cut(s) | 148 |
| DpnI | GATC | 1 cut(s) | 6 |
| DpnII | GATC | 1 cut(s) | 4 |
| EciI | GGCGGA | 1 cut(s) | 105 |
| Eco31I | GGTCTC | 1 cut(s) | 32 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| FaeI | CATG | 3 cut(s) | 11, 154, 161 |
| FaiI | YATR | 8 cut(s) | 9, 24, 39, 51, 81, 152, 159, 212 |
| FatI | CATG | 3 cut(s) | 7, 150, 157 |
| Fnu4HI | GCNGC | 1 cut(s) | 135 |
| Fsp4HI | GCNGC | 1 cut(s) | 135 |
| FspBI | CTAG | 1 cut(s) | 144 |
| GluI | GCNGC | 1 cut(s) | 135 |
| GsaI | CCCAGC | 1 cut(s) | 204 |
| Hin1II | CATG | 3 cut(s) | 11, 154, 161 |
| HphI | GGTGA | 1 cut(s) | 212 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 31 |
| HpyCH4IV | ACGT | 1 cut(s) | 54 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 161 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 167, 197 |
| HpySE526I | ACGT | 1 cut(s) | 54 |
| Hsp92II | CATG | 3 cut(s) | 11, 154, 161 |
| Kzo9I | GATC | 1 cut(s) | 4 |
| LmnI | GCTCC | 1 cut(s) | 154 |
| LpnPI | CCDG | 1 cut(s) | 186 |
| Lsp1109I | GCAGC | 1 cut(s) | 121 |
| MaeI | CTAG | 1 cut(s) | 144 |
| MaeII | ACGT | 1 cut(s) | 54 |
| MaeIII | GTNAC | 1 cut(s) | 204 |
| MalI | GATC | 1 cut(s) | 6 |
| MboI | GATC | 1 cut(s) | 4 |
| MluCI | AATT | 1 cut(s) | 14 |
| MmeI | TCCRAC | 1 cut(s) | 76 |
| MnlI | CCTC | 2 cut(s) | 109, 175 |
| MseI | TTAA | 1 cut(s) | 45 |
| Mva1269I | GAATGC | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 167, 197 |
| NdeII | GATC | 1 cut(s) | 4 |
| NlaIII | CATG | 3 cut(s) | 11, 154, 161 |
| NspI | RCATGY | 1 cut(s) | 161 |
| PaeI | GCATGC | 1 cut(s) | 161 |
| PaeR7I | CTCGAG | 1 cut(s) | 29 |
| PctI | GAATGC | 1 cut(s) | 65 |
| PkrI | GCNGC | 1 cut(s) | 136 |
| Psp1406I | AACGTT | 1 cut(s) | 54 |
| PspFI | CCCAGC | 1 cut(s) | 200 |
| RsaI | GTAC | 1 cut(s) | 149 |
| RsaNI | GTAC | 1 cut(s) | 148 |
| SaqAI | TTAA | 1 cut(s) | 45 |
| SatI | GCNGC | 1 cut(s) | 135 |
| Sau3AI | GATC | 1 cut(s) | 4 |
| SetI | ASST | 5 cut(s) | 57, 120, 136, 149, 217 |
| Sfr274I | CTCGAG | 1 cut(s) | 29 |
| SlaI | CTCGAG | 1 cut(s) | 29 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| SphI | GCATGC | 1 cut(s) | 161 |
| Sse9I | AATT | 1 cut(s) | 14 |
| SsiI | CCGC | 1 cut(s) | 90 |
| SspMI | CTAG | 1 cut(s) | 144 |
| TaiI | ACGT | 1 cut(s) | 57 |
| TaqI | TCGA | 1 cut(s) | 30 |
| TasI | AATT | 1 cut(s) | 14 |
| Tru1I | TTAA | 1 cut(s) | 45 |
| Tru9I | TTAA | 1 cut(s) | 45 |
| TseI | GCWGC | 1 cut(s) | 134 |
| XceI | RCATGY | 1 cut(s) | 161 |
| XhoI | CTCGAG | 1 cut(s) | 29 |
| XspI | CTAG | 1 cut(s) | 144 |