Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 79 |
| AccII | CGCG | 1 cut(s) | 33 |
| AciI | CCGC | 2 cut(s) | 73, 408 |
| AcoI | YGGCCR | 1 cut(s) | 438 |
| AcuI | CTGAAG | 1 cut(s) | 210 |
| AfaI | GTAC | 1 cut(s) | 366 |
| AluBI | AGCT | 3 cut(s) | 158, 272, 305 |
| AluI | AGCT | 3 cut(s) | 158, 272, 305 |
| Alw26I | GTCTC | 1 cut(s) | 335 |
| AoxI | GGCC | 2 cut(s) | 438, 448 |
| ApaI | GGGCCC | 1 cut(s) | 452 |
| ApeKI | GCWGC | 2 cut(s) | 22, 158 |
| AspLEI | GCGC | 2 cut(s) | 33, 201 |
| AspS9I | GGNCC | 3 cut(s) | 404, 448, 449 |
| AsuC2I | CCSGG | 1 cut(s) | 413 |
| AsuNHI | GCTAGC | 1 cut(s) | 154 |
| AvaII | GGWCC | 1 cut(s) | 404 |
| BaeGI | GKGCMC | 1 cut(s) | 452 |
| BalI | TGGCCA | 1 cut(s) | 440 |
| BanII | GRGCYC | 1 cut(s) | 452 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 426, 458 |
| BauI | CACGAG | 1 cut(s) | 149 |
| BbvI | GCAGC | 2 cut(s) | 34, 145 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 245, 279 |
| BcnI | CCSGG | 1 cut(s) | 413 |
| BcoDI | GTCTC | 1 cut(s) | 335 |
| BfaI | CTAG | 3 cut(s) | 155, 302, 306 |
| BfuAI | ACCTGC | 1 cut(s) | 79 |
| BglII | AGATCT | 1 cut(s) | 185 |
| BisI | GCNGC | 2 cut(s) | 23, 159 |
| BlsI | GCNGC | 2 cut(s) | 24, 160 |
| Bme1390I | CCNGG | 1 cut(s) | 413 |
| Bme18I | GGWCC | 1 cut(s) | 404 |
| BmgT120I | GGNCC | 3 cut(s) | 404, 448, 449 |
| BmiI | GGNNCC | 2 cut(s) | 406, 450 |
| BmrFI | CCNGG | 1 cut(s) | 413 |
| BmsI | GCATC | 1 cut(s) | 109 |
| BmtI | GCTAGC | 1 cut(s) | 158 |
| BpmI | CTGGAG | 1 cut(s) | 341 |
| BpuEI | CTTGAG | 1 cut(s) | 152 |
| BpuMI | CCSGG | 1 cut(s) | 413 |
| Bsa29I | ATCGAT | 1 cut(s) | 207 |
| BsaJI | CCNNGG | 1 cut(s) | 411 |
| Bse3DI | GCAATG | 1 cut(s) | 32 |
| BseCI | ATCGAT | 1 cut(s) | 207 |
| BseDI | CCNNGG | 1 cut(s) | 411 |
| BseMI | GCAATG | 1 cut(s) | 32 |
| BseSI | GKGCMC | 1 cut(s) | 452 |
| BseXI | GCAGC | 2 cut(s) | 34, 145 |
| Bsh1236I | CGCG | 1 cut(s) | 33 |
| BshFI | GGCC | 2 cut(s) | 440, 450 |
| BshVI | ATCGAT | 1 cut(s) | 207 |
| BsiSI | CCGG | 1 cut(s) | 413 |
| BsmAI | GTCTC | 1 cut(s) | 335 |
| BsnI | GGCC | 2 cut(s) | 440, 450 |
| Bsp120I | GGGCCC | 1 cut(s) | 448 |
| Bsp1286I | GDGCHC | 1 cut(s) | 452 |
| Bsp143I | GATC | 1 cut(s) | 185 |
| BspACI | CCGC | 2 cut(s) | 73, 408 |
| BspANI | GGCC | 2 cut(s) | 440, 450 |
| BspDI | ATCGAT | 1 cut(s) | 207 |
| BspFNI | CGCG | 1 cut(s) | 33 |
| BspLI | GGNNCC | 2 cut(s) | 406, 450 |
| BspMI | ACCTGC | 1 cut(s) | 79 |
| BspOI | GCTAGC | 1 cut(s) | 158 |
| BsrDI | GCAATG | 1 cut(s) | 32 |
| BssECI | CCNNGG | 1 cut(s) | 411 |
| BssMI | GATC | 1 cut(s) | 185 |
| BssSI | CACGAG | 1 cut(s) | 149 |
| Bst2BI | CACGAG | 1 cut(s) | 149 |
| Bst6I | CTCTTC | 1 cut(s) | 60 |
| BstC8I | GCNNGC | 1 cut(s) | 156 |
| BstDEI | CTNAG | 1 cut(s) | 456 |
| BstFNI | CGCG | 1 cut(s) | 33 |
| BstHHI | GCGC | 2 cut(s) | 33, 201 |
| BstKTI | GATC | 1 cut(s) | 188 |
| BstMAI | GTCTC | 1 cut(s) | 335 |
| BstMBI | GATC | 1 cut(s) | 185 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 28, 85, 302 |
| BstNSI | RCATGY | 1 cut(s) | 260 |
| BstSCI | CCNGG | 1 cut(s) | 411 |
| BstSLI | GKGCMC | 1 cut(s) | 452 |
| BstUI | CGCG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 2 cut(s) | 34, 145 |
| BstX2I | RGATCY | 1 cut(s) | 185 |
| BstYI | RGATCY | 1 cut(s) | 185 |
| Bsu15I | ATCGAT | 1 cut(s) | 207 |
| BsuRI | GGCC | 2 cut(s) | 440, 450 |
| BsuTUI | ATCGAT | 1 cut(s) | 207 |
| BveI | ACCTGC | 1 cut(s) | 79 |
| Cac8I | GCNNGC | 1 cut(s) | 156 |
| CfoI | GCGC | 2 cut(s) | 33, 201 |
| Cfr13I | GGNCC | 3 cut(s) | 404, 448, 449 |
| ClaI | ATCGAT | 1 cut(s) | 207 |
| Csp6I | GTAC | 1 cut(s) | 365 |
| CviAII | CATG | 3 cut(s) | 46, 66, 257 |
| CviJI | RGCY | 6 cut(s) | 79, 158, 272, 305, 440, 450 |
| CviKI_1 | RGCY | 6 cut(s) | 79, 158, 272, 305, 440, 450 |
| CviQI | GTAC | 1 cut(s) | 365 |
| DdeI | CTNAG | 1 cut(s) | 456 |
| DpnI | GATC | 1 cut(s) | 187 |
| DpnII | GATC | 1 cut(s) | 185 |
| EaeI | YGGCCR | 1 cut(s) | 438 |
| Eam1104I | CTCTTC | 1 cut(s) | 60 |
| EarI | CTCTTC | 1 cut(s) | 60 |
| EciI | GGCGGA | 1 cut(s) | 88 |
| Eco24I | GRGCYC | 1 cut(s) | 452 |
| Eco47I | GGWCC | 1 cut(s) | 404 |
| Eco57I | CTGAAG | 1 cut(s) | 210 |
| EcoO109I | RGGNCCY | 2 cut(s) | 404, 448 |
| EcoT38I | GRGCYC | 1 cut(s) | 452 |
| FaeI | CATG | 3 cut(s) | 49, 69, 260 |
| FaiI | YATR | 5 cut(s) | 47, 67, 258, 372, 443 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 245, 277 |
| FatI | CATG | 3 cut(s) | 45, 65, 256 |
| FauI | CCCGC | 1 cut(s) | 415 |
| Fnu4HI | GCNGC | 2 cut(s) | 23, 159 |
| FriOI | GRGCYC | 1 cut(s) | 452 |
| Fsp4HI | GCNGC | 2 cut(s) | 23, 159 |
| FspBI | CTAG | 3 cut(s) | 155, 302, 306 |
| GlaI | GCGC | 2 cut(s) | 32, 200 |
| GluI | GCNGC | 2 cut(s) | 23, 159 |
| GsuI | CTGGAG | 1 cut(s) | 341 |
| HaeIII | GGCC | 2 cut(s) | 440, 450 |
| HapII | CCGG | 1 cut(s) | 413 |
| HhaI | GCGC | 2 cut(s) | 33, 201 |
| Hin1II | CATG | 3 cut(s) | 49, 69, 260 |
| Hin6I | GCGC | 2 cut(s) | 31, 199 |
| HinP1I | GCGC | 2 cut(s) | 31, 199 |
| HinfI | GANTC | 2 cut(s) | 352, 416 |
| HpaII | CCGG | 1 cut(s) | 413 |
| Hpy188I | TCNGA | 3 cut(s) | 190, 426, 433 |
| Hpy188III | TCNNGA | 3 cut(s) | 110, 266, 358 |
| HpyCH4V | TGCA | 2 cut(s) | 22, 166 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 28, 85, 302 |
| HpyF3I | CTNAG | 1 cut(s) | 456 |
| Hsp92II | CATG | 3 cut(s) | 49, 69, 260 |
| HspAI | GCGC | 2 cut(s) | 31, 199 |
| Kzo9I | GATC | 1 cut(s) | 185 |
| LpnPI | CCDG | 5 cut(s) | 74, 233, 371, 426, 431 |
| Lsp1109I | GCAGC | 2 cut(s) | 34, 145 |
| LweI | GCATC | 1 cut(s) | 109 |
| MaeI | CTAG | 3 cut(s) | 155, 302, 306 |
| MaeIII | GTNAC | 1 cut(s) | 219 |
| MalI | GATC | 1 cut(s) | 187 |
| MboI | GATC | 1 cut(s) | 185 |
| MboII | GAAGA | 2 cut(s) | 16, 47 |
| MflI | RGATCY | 1 cut(s) | 185 |
| MhlI | GDGCHC | 1 cut(s) | 452 |
| MlsI | TGGCCA | 1 cut(s) | 440 |
| MluCI | AATT | 1 cut(s) | 313 |
| MluNI | TGGCCA | 1 cut(s) | 440 |
| MnlI | CCTC | 6 cut(s) | 53, 63, 69, 172, 367, 389 |
| Mox20I | TGGCCA | 1 cut(s) | 440 |
| MscI | TGGCCA | 1 cut(s) | 440 |
| MseI | TTAA | 1 cut(s) | 252 |
| Msp20I | TGGCCA | 1 cut(s) | 440 |
| MspI | CCGG | 1 cut(s) | 413 |
| MspR9I | CCNGG | 1 cut(s) | 413 |
| MvnI | CGCG | 1 cut(s) | 33 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 28, 85, 302 |
| NciI | CCSGG | 1 cut(s) | 413 |
| NdeII | GATC | 1 cut(s) | 185 |
| NheI | GCTAGC | 1 cut(s) | 154 |
| NlaIII | CATG | 3 cut(s) | 49, 69, 260 |
| NlaIV | GGNNCC | 2 cut(s) | 406, 450 |
| NmuCI | GTSAC | 1 cut(s) | 219 |
| NspI | RCATGY | 1 cut(s) | 260 |
| PfeI | GAWTC | 2 cut(s) | 352, 416 |
| PkrI | GCNGC | 2 cut(s) | 24, 160 |
| PpuMI | RGGWCCY | 1 cut(s) | 404 |
| Psp5II | RGGWCCY | 1 cut(s) | 404 |
| PspN4I | GGNNCC | 2 cut(s) | 406, 450 |
| PspOMI | GGGCCC | 1 cut(s) | 448 |
| PspPI | GGNCC | 3 cut(s) | 404, 448, 449 |
| PspPPI | RGGWCCY | 1 cut(s) | 404 |
| PsuI | RGATCY | 1 cut(s) | 185 |
| RsaI | GTAC | 1 cut(s) | 366 |
| RsaNI | GTAC | 1 cut(s) | 365 |
| SaqAI | TTAA | 1 cut(s) | 252 |
| SatI | GCNGC | 2 cut(s) | 23, 159 |
| Sau3AI | GATC | 1 cut(s) | 185 |
| Sau96I | GGNCC | 3 cut(s) | 404, 448, 449 |
| ScrFI | CCNGG | 1 cut(s) | 413 |
| SduI | GDGCHC | 1 cut(s) | 452 |
| SfaNI | GCATC | 1 cut(s) | 109 |
| SinI | GGWCC | 1 cut(s) | 404 |
| SmlI | CTYRAG | 1 cut(s) | 131 |
| SmoI | CTYRAG | 1 cut(s) | 131 |
| Sse9I | AATT | 1 cut(s) | 313 |
| SsiI | CCGC | 2 cut(s) | 73, 408 |
| SspMI | CTAG | 3 cut(s) | 155, 302, 306 |
| StyD4I | CCNGG | 1 cut(s) | 411 |
| TaqI | TCGA | 2 cut(s) | 207, 265 |
| TasI | AATT | 1 cut(s) | 313 |
| TfiI | GAWTC | 2 cut(s) | 352, 416 |
| Tru1I | TTAA | 1 cut(s) | 252 |
| Tru9I | TTAA | 1 cut(s) | 252 |
| TseFI | GTSAC | 1 cut(s) | 219 |
| TseI | GCWGC | 2 cut(s) | 22, 158 |
| Tsp45I | GTSAC | 1 cut(s) | 219 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 1 cut(s) | 404 |
| XceI | RCATGY | 1 cut(s) | 260 |
| XspI | CTAG | 3 cut(s) | 155, 302, 306 |