Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 7 |
| Acc36I | ACCTGC | 3 cut(s) | 7, 43, 266 |
| AciI | CCGC | 1 cut(s) | 640 |
| AcoI | YGGCCR | 1 cut(s) | 700 |
| AcuI | CTGAAG | 2 cut(s) | 8, 590 |
| AfaI | GTAC | 1 cut(s) | 231 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 593 |
| AgsI | TTSAA | 1 cut(s) | 65 |
| AjnI | CCWGG | 1 cut(s) | 405 |
| AleI | CACNNNNGTG | 1 cut(s) | 247 |
| AluBI | AGCT | 4 cut(s) | 72, 189, 262, 421 |
| AluI | AGCT | 4 cut(s) | 72, 189, 262, 421 |
| AoxI | GGCC | 5 cut(s) | 303, 403, 618, 676, 700 |
| ApeKI | GCWGC | 1 cut(s) | 421 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 261, 335 |
| AspS9I | GGNCC | 1 cut(s) | 304 |
| AsuHPI | GGTGA | 2 cut(s) | 410, 444 |
| AsuII | TTCGAA | 1 cut(s) | 339 |
| BalI | TGGCCA | 1 cut(s) | 702 |
| BbvI | GCAGC | 1 cut(s) | 408 |
| BccI | CCATC | 3 cut(s) | 320, 395, 519 |
| BceAI | ACGGC | 1 cut(s) | 284 |
| BciT130I | CCWGG | 1 cut(s) | 407 |
| BfaI | CTAG | 2 cut(s) | 561, 576 |
| BfuAI | ACCTGC | 3 cut(s) | 7, 43, 266 |
| BisI | GCNGC | 1 cut(s) | 422 |
| BlsI | GCNGC | 1 cut(s) | 423 |
| Bme1390I | CCNGG | 1 cut(s) | 407 |
| BmgT120I | GGNCC | 1 cut(s) | 304 |
| BmrFI | CCNGG | 1 cut(s) | 407 |
| BmsI | GCATC | 4 cut(s) | 50, 131, 357, 538 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 608, 640 |
| Bpu14I | TTCGAA | 1 cut(s) | 339 |
| BsaBI | GATNNNNATC | 1 cut(s) | 498 |
| BsaJI | CCNNGG | 1 cut(s) | 300 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 596, 626 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 593 |
| Bse1I | ACTGG | 1 cut(s) | 431 |
| Bse8I | GATNNNNATC | 1 cut(s) | 498 |
| BseBI | CCWGG | 1 cut(s) | 407 |
| BseDI | CCNNGG | 1 cut(s) | 300 |
| BseGI | GGATG | 2 cut(s) | 312, 530 |
| BseJI | GATNNNNATC | 1 cut(s) | 498 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 593 |
| BseMII | CTCAG | 1 cut(s) | 606 |
| BseNI | ACTGG | 1 cut(s) | 431 |
| BseXI | GCAGC | 1 cut(s) | 408 |
| BsgI | GTGCAG | 1 cut(s) | 407 |
| BshFI | GGCC | 5 cut(s) | 305, 405, 620, 678, 702 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 593 |
| BsnI | GGCC | 5 cut(s) | 305, 405, 620, 678, 702 |
| Bsp119I | TTCGAA | 1 cut(s) | 339 |
| BspACI | CCGC | 1 cut(s) | 640 |
| BspANI | GGCC | 5 cut(s) | 305, 405, 620, 678, 702 |
| BspCNI | CTCAG | 1 cut(s) | 605 |
| BspHI | TCATGA | 1 cut(s) | 327 |
| BspMI | ACCTGC | 3 cut(s) | 7, 43, 266 |
| BspT104I | TTCGAA | 1 cut(s) | 339 |
| BsrI | ACTGG | 1 cut(s) | 431 |
| BssECI | CCNNGG | 1 cut(s) | 300 |
| Bst2UI | CCWGG | 1 cut(s) | 407 |
| Bst6I | CTCTTC | 1 cut(s) | 631 |
| BstBI | TTCGAA | 1 cut(s) | 339 |
| BstC8I | GCNNGC | 1 cut(s) | 513 |
| BstDEI | CTNAG | 4 cut(s) | 266, 592, 609, 680 |
| BstDSI | CCRYGG | 1 cut(s) | 300 |
| BstF5I | GGATG | 2 cut(s) | 312, 530 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 512, 517 |
| BstNI | CCWGG | 1 cut(s) | 407 |
| BstSCI | CCNGG | 1 cut(s) | 405 |
| BstV1I | GCAGC | 1 cut(s) | 408 |
| BsuRI | GGCC | 5 cut(s) | 305, 405, 620, 678, 702 |
| BtgI | CCRYGG | 1 cut(s) | 300 |
| BtsCI | GGATG | 2 cut(s) | 312, 530 |
| BtsI | GCAGTG | 1 cut(s) | 506 |
| BtsIMutI | CAGTG | 2 cut(s) | 424, 506 |
| BveI | ACCTGC | 3 cut(s) | 7, 43, 266 |
| Cac8I | GCNNGC | 1 cut(s) | 513 |
| CciI | TCATGA | 1 cut(s) | 327 |
| Cfr13I | GGNCC | 1 cut(s) | 304 |
| CseI | GACGC | 1 cut(s) | 47 |
| Csp6I | GTAC | 1 cut(s) | 230 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 374, 409 |
| CviAII | CATG | 5 cut(s) | 155, 245, 328, 435, 636 |
| CviQI | GTAC | 1 cut(s) | 230 |
| DdeI | CTNAG | 4 cut(s) | 266, 592, 609, 680 |
| EaeI | YGGCCR | 1 cut(s) | 700 |
| Eam1104I | CTCTTC | 1 cut(s) | 631 |
| EarI | CTCTTC | 1 cut(s) | 631 |
| EciI | GGCGGA | 1 cut(s) | 655 |
| Eco147I | AGGCCT | 1 cut(s) | 678 |
| Eco57I | CTGAAG | 2 cut(s) | 8, 590 |
| EcoRII | CCWGG | 1 cut(s) | 405 |
| EcoT22I | ATGCAT | 1 cut(s) | 372 |
| FaeI | CATG | 5 cut(s) | 158, 248, 331, 438, 639 |
| FatI | CATG | 5 cut(s) | 154, 244, 327, 434, 635 |
| Fnu4HI | GCNGC | 1 cut(s) | 422 |
| FokI | GGATG | 2 cut(s) | 299, 537 |
| Fsp4HI | GCNGC | 1 cut(s) | 422 |
| FspBI | CTAG | 2 cut(s) | 561, 576 |
| GluI | GCNGC | 1 cut(s) | 422 |
| HaeIII | GGCC | 5 cut(s) | 305, 405, 620, 678, 702 |
| HgaI | GACGC | 1 cut(s) | 47 |
| Hin1II | CATG | 5 cut(s) | 158, 248, 331, 438, 639 |
| HincII | GTYRAC | 1 cut(s) | 558 |
| HindII | GTYRAC | 1 cut(s) | 558 |
| HindIII | AAGCTT | 1 cut(s) | 260 |
| HinfI | GANTC | 2 cut(s) | 623, 684 |
| HphI | GGTGA | 2 cut(s) | 410, 444 |
| Hpy166II | GTNNAC | 2 cut(s) | 452, 558 |
| Hpy188I | TCNGA | 2 cut(s) | 102, 141 |
| Hpy188III | TCNNGA | 2 cut(s) | 45, 328 |
| Hpy8I | GTNNAC | 2 cut(s) | 452, 558 |
| HpyAV | CCTTC | 2 cut(s) | 327, 565 |
| HpyCH4IV | ACGT | 1 cut(s) | 706 |
| HpyCH4V | TGCA | 4 cut(s) | 370, 424, 490, 506 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 512, 517 |
| HpyF3I | CTNAG | 4 cut(s) | 266, 592, 609, 680 |
| HpySE526I | ACGT | 1 cut(s) | 706 |
| Hsp92II | CATG | 5 cut(s) | 158, 248, 331, 438, 639 |
| LmnI | GCTCC | 1 cut(s) | 540 |
| Lsp1109I | GCAGC | 1 cut(s) | 408 |
| LweI | GCATC | 4 cut(s) | 50, 131, 357, 538 |
| MaeI | CTAG | 2 cut(s) | 561, 576 |
| MaeII | ACGT | 1 cut(s) | 706 |
| MboII | GAAGA | 4 cut(s) | 53, 247, 427, 618 |
| MlsI | TGGCCA | 1 cut(s) | 702 |
| MluCI | AATT | 4 cut(s) | 75, 291, 331, 386 |
| MluNI | TGGCCA | 1 cut(s) | 702 |
| MlyI | GAGTC | 1 cut(s) | 617 |
| MmeI | TCCRAC | 3 cut(s) | 562, 594, 648 |
| Mox20I | TGGCCA | 1 cut(s) | 702 |
| Mph1103I | ATGCAT | 1 cut(s) | 372 |
| MroXI | GAANNNNTTC | 2 cut(s) | 261, 335 |
| MscI | TGGCCA | 1 cut(s) | 702 |
| MseI | TTAA | 5 cut(s) | 57, 105, 290, 294, 498 |
| MslI | CAYNNNNRTG | 1 cut(s) | 247 |
| Msp20I | TGGCCA | 1 cut(s) | 702 |
| MspR9I | CCNGG | 1 cut(s) | 407 |
| MvaI | CCWGG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 512, 517 |
| NlaIII | CATG | 5 cut(s) | 158, 248, 331, 438, 639 |
| NsiI | ATGCAT | 1 cut(s) | 372 |
| NspV | TTCGAA | 1 cut(s) | 339 |
| OliI | CACNNNNGTG | 1 cut(s) | 247 |
| PacI | TTAATTAA | 1 cut(s) | 294 |
| PagI | TCATGA | 1 cut(s) | 327 |
| PaqCI | CACCTGC | 1 cut(s) | 7 |
| PceI | AGGCCT | 1 cut(s) | 678 |
| PdmI | GAANNNNTTC | 2 cut(s) | 261, 335 |
| PfeI | GAWTC | 1 cut(s) | 684 |
| PkrI | GCNGC | 1 cut(s) | 423 |
| PleI | GAGTC | 1 cut(s) | 617 |
| PpsI | GAGTC | 1 cut(s) | 617 |
| Psp6I | CCWGG | 1 cut(s) | 405 |
| PspGI | CCWGG | 1 cut(s) | 405 |
| PspPI | GGNCC | 1 cut(s) | 304 |
| RsaI | GTAC | 1 cut(s) | 231 |
| RsaNI | GTAC | 1 cut(s) | 230 |
| RseI | CAYNNNNRTG | 1 cut(s) | 247 |
| SaqAI | TTAA | 5 cut(s) | 57, 105, 290, 294, 498 |
| SatI | GCNGC | 1 cut(s) | 422 |
| Sau96I | GGNCC | 1 cut(s) | 304 |
| SchI | GAGTC | 1 cut(s) | 617 |
| ScrFI | CCNGG | 1 cut(s) | 407 |
| SfaNI | GCATC | 4 cut(s) | 50, 131, 357, 538 |
| SfuI | TTCGAA | 1 cut(s) | 339 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 247 |
| Sse9I | AATT | 4 cut(s) | 75, 291, 331, 386 |
| SseBI | AGGCCT | 1 cut(s) | 678 |
| SsiI | CCGC | 1 cut(s) | 640 |
| SspI | AATATT | 1 cut(s) | 164 |
| SspMI | CTAG | 2 cut(s) | 561, 576 |
| StuI | AGGCCT | 1 cut(s) | 678 |
| StyD4I | CCNGG | 1 cut(s) | 405 |
| TaiI | ACGT | 1 cut(s) | 709 |
| TaqI | TCGA | 3 cut(s) | 88, 339, 349 |
| TasI | AATT | 4 cut(s) | 75, 291, 331, 386 |
| TfiI | GAWTC | 1 cut(s) | 684 |
| Tru1I | TTAA | 5 cut(s) | 57, 105, 290, 294, 498 |
| Tru9I | TTAA | 5 cut(s) | 57, 105, 290, 294, 498 |
| TscAI | CASTG | 2 cut(s) | 431, 513 |
| TseI | GCWGC | 1 cut(s) | 421 |
| TspDTI | ATGAA | 2 cut(s) | 344, 423 |
| TspRI | CASTG | 2 cut(s) | 431, 513 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 695 |
| XmnI | GAANNNNTTC | 2 cut(s) | 261, 335 |
| XspI | CTAG | 2 cut(s) | 561, 576 |
| Zsp2I | ATGCAT | 1 cut(s) | 372 |