Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 661 |
| AccI | GTMKAC | 1 cut(s) | 247 |
| AclWI | GGATC | 2 cut(s) | 200, 405 |
| AcoI | YGGCCR | 1 cut(s) | 216 |
| AcsI | RAATTY | 2 cut(s) | 163, 582 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 121, 627 |
| AjnI | CCWGG | 2 cut(s) | 626, 642 |
| AluBI | AGCT | 5 cut(s) | 26, 280, 326, 593, 685 |
| AluI | AGCT | 5 cut(s) | 26, 280, 326, 593, 685 |
| Alw21I | GWGCWC | 1 cut(s) | 595 |
| AlwI | GGATC | 2 cut(s) | 200, 405 |
| AoxI | GGCC | 2 cut(s) | 216, 408 |
| ApeKI | GCWGC | 2 cut(s) | 185, 449 |
| ApoI | RAATTY | 2 cut(s) | 163, 582 |
| AspS9I | GGNCC | 2 cut(s) | 373, 640 |
| AsuC2I | CCSGG | 1 cut(s) | 386 |
| AsuHPI | GGTGA | 1 cut(s) | 515 |
| AvaII | GGWCC | 2 cut(s) | 373, 640 |
| AxyI | CCTNAGG | 1 cut(s) | 120 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 487, 520 |
| BalI | TGGCCA | 1 cut(s) | 218 |
| BanII | GRGCYC | 1 cut(s) | 595 |
| BauI | CACGAG | 2 cut(s) | 327, 471 |
| Bbv12I | GWGCWC | 1 cut(s) | 595 |
| BbvI | GCAGC | 2 cut(s) | 172, 461 |
| BccI | CCATC | 2 cut(s) | 97, 108 |
| BceAI | ACGGC | 1 cut(s) | 173 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 335, 369 |
| BciT130I | CCWGG | 2 cut(s) | 628, 644 |
| BciVI | GTATCC | 3 cut(s) | 78, 118, 488 |
| BclI | TGATCA | 1 cut(s) | 153 |
| BcnI | CCSGG | 1 cut(s) | 386 |
| BfaI | CTAG | 3 cut(s) | 9, 587, 689 |
| BfmI | CTRYAG | 2 cut(s) | 379, 576 |
| BfuI | GTATCC | 3 cut(s) | 78, 118, 488 |
| BisI | GCNGC | 2 cut(s) | 186, 450 |
| BlsI | GCNGC | 2 cut(s) | 187, 451 |
| Bme1390I | CCNGG | 3 cut(s) | 386, 628, 644 |
| Bme18I | GGWCC | 2 cut(s) | 373, 640 |
| BmgT120I | GGNCC | 2 cut(s) | 373, 640 |
| BmiI | GGNNCC | 4 cut(s) | 55, 374, 375, 641 |
| BmrFI | CCNGG | 3 cut(s) | 386, 628, 644 |
| BpmI | CTGGAG | 1 cut(s) | 412 |
| BpuMI | CCSGG | 1 cut(s) | 386 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 45, 75 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 121, 627 |
| Bse1I | ACTGG | 3 cut(s) | 14, 86, 216 |
| Bse21I | CCTNAGG | 1 cut(s) | 120 |
| BseBI | CCWGG | 2 cut(s) | 628, 644 |
| BseGI | GGATG | 1 cut(s) | 617 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 121, 627 |
| BseMII | CTCAG | 3 cut(s) | 134, 513, 660 |
| BseNI | ACTGG | 3 cut(s) | 14, 86, 216 |
| BseRI | GAGGAG | 1 cut(s) | 585 |
| BseXI | GCAGC | 2 cut(s) | 172, 461 |
| BseYI | CCCAGC | 1 cut(s) | 419 |
| BshFI | GGCC | 2 cut(s) | 218, 410 |
| BsiHKAI | GWGCWC | 1 cut(s) | 595 |
| BsiSI | CCGG | 1 cut(s) | 386 |
| BslFI | GGGAC | 3 cut(s) | 86, 386, 552 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 121, 627 |
| BsmFI | GGGAC | 3 cut(s) | 86, 386, 552 |
| BsnI | GGCC | 2 cut(s) | 218, 410 |
| Bsp1286I | GDGCHC | 1 cut(s) | 595 |
| Bsp143I | GATC | 5 cut(s) | 153, 205, 346, 397, 505 |
| BspANI | GGCC | 2 cut(s) | 218, 410 |
| BspCNI | CTCAG | 3 cut(s) | 133, 512, 661 |
| BspHI | TCATGA | 1 cut(s) | 253 |
| BspLI | GGNNCC | 4 cut(s) | 55, 374, 375, 641 |
| BspPI | GGATC | 2 cut(s) | 200, 405 |
| BsrI | ACTGG | 3 cut(s) | 14, 86, 216 |
| BssMI | GATC | 5 cut(s) | 153, 205, 346, 397, 505 |
| BssSI | CACGAG | 2 cut(s) | 327, 471 |
| Bst2BI | CACGAG | 2 cut(s) | 327, 471 |
| Bst2UI | CCWGG | 2 cut(s) | 628, 644 |
| Bst4CI | ACNGT | 3 cut(s) | 130, 322, 544 |
| BstDEI | CTNAG | 4 cut(s) | 120, 222, 499, 669 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 119 |
| BstF5I | GGATG | 1 cut(s) | 617 |
| BstKTI | GATC | 5 cut(s) | 156, 208, 349, 400, 508 |
| BstMBI | GATC | 5 cut(s) | 153, 205, 346, 397, 505 |
| BstNI | CCWGG | 2 cut(s) | 628, 644 |
| BstSCI | CCNGG | 3 cut(s) | 384, 626, 642 |
| BstSFI | CTRYAG | 2 cut(s) | 379, 576 |
| BstV1I | GCAGC | 2 cut(s) | 172, 461 |
| BstX2I | RGATCY | 1 cut(s) | 397 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 427 |
| BstYI | RGATCY | 1 cut(s) | 397 |
| Bsu36I | CCTNAGG | 1 cut(s) | 120 |
| BsuI | GTATCC | 3 cut(s) | 78, 118, 488 |
| BsuRI | GGCC | 2 cut(s) | 218, 410 |
| BtsCI | GGATG | 1 cut(s) | 617 |
| BtsIMutI | CAGTG | 3 cut(s) | 135, 209, 452 |
| CciI | TCATGA | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 2 cut(s) | 373, 640 |
| CseI | GACGC | 1 cut(s) | 191 |
| CviAII | CATG | 5 cut(s) | 254, 265, 273, 340, 571 |
| DdeI | CTNAG | 4 cut(s) | 120, 222, 499, 669 |
| DpnI | GATC | 5 cut(s) | 155, 207, 348, 399, 507 |
| DpnII | GATC | 5 cut(s) | 153, 205, 346, 397, 505 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 661 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 661 |
| EaeI | YGGCCR | 1 cut(s) | 216 |
| Ecl136II | GAGCTC | 1 cut(s) | 593 |
| Eco24I | GRGCYC | 1 cut(s) | 595 |
| Eco47I | GGWCC | 2 cut(s) | 373, 640 |
| Eco53kI | GAGCTC | 1 cut(s) | 593 |
| Eco81I | CCTNAGG | 1 cut(s) | 120 |
| EcoICRI | GAGCTC | 1 cut(s) | 593 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 119 |
| EcoO109I | RGGNCCY | 2 cut(s) | 373, 640 |
| EcoRI | GAATTC | 1 cut(s) | 163 |
| EcoRII | CCWGG | 2 cut(s) | 626, 642 |
| EcoT38I | GRGCYC | 1 cut(s) | 595 |
| FaeI | CATG | 5 cut(s) | 257, 268, 276, 343, 574 |
| FaqI | GGGAC | 3 cut(s) | 86, 386, 552 |
| FatI | CATG | 5 cut(s) | 253, 264, 272, 339, 570 |
| FauNDI | CATATG | 1 cut(s) | 68 |
| FbaI | TGATCA | 1 cut(s) | 153 |
| FblI | GTMKAC | 1 cut(s) | 247 |
| Fnu4HI | GCNGC | 2 cut(s) | 186, 450 |
| FokI | GGATG | 1 cut(s) | 604 |
| FriOI | GRGCYC | 1 cut(s) | 595 |
| Fsp4HI | GCNGC | 2 cut(s) | 186, 450 |
| FspBI | CTAG | 3 cut(s) | 9, 587, 689 |
| GluI | GCNGC | 2 cut(s) | 186, 450 |
| GsaI | CCCAGC | 1 cut(s) | 423 |
| GsuI | CTGGAG | 1 cut(s) | 412 |
| HaeIII | GGCC | 2 cut(s) | 218, 410 |
| HapII | CCGG | 1 cut(s) | 386 |
| HgaI | GACGC | 1 cut(s) | 191 |
| Hin1II | CATG | 5 cut(s) | 257, 268, 276, 343, 574 |
| HindIII | AAGCTT | 1 cut(s) | 683 |
| HinfI | GANTC | 2 cut(s) | 74, 141 |
| HpaII | CCGG | 1 cut(s) | 386 |
| HphI | GGTGA | 1 cut(s) | 515 |
| Hpy166II | GTNNAC | 2 cut(s) | 193, 248 |
| Hpy188I | TCNGA | 2 cut(s) | 79, 670 |
| Hpy188III | TCNNGA | 4 cut(s) | 122, 254, 329, 391 |
| Hpy8I | GTNNAC | 2 cut(s) | 193, 248 |
| HpyAV | CCTTC | 4 cut(s) | 400, 470, 624, 625 |
| HpyCH4III | ACNGT | 3 cut(s) | 130, 322, 544 |
| HpyCH4V | TGCA | 1 cut(s) | 511 |
| HpyF3I | CTNAG | 4 cut(s) | 120, 222, 499, 669 |
| Hsp92II | CATG | 5 cut(s) | 257, 268, 276, 343, 574 |
| KflI | GGGWCCC | 1 cut(s) | 373 |
| Ksp22I | TGATCA | 1 cut(s) | 153 |
| Kzo9I | GATC | 5 cut(s) | 153, 205, 346, 397, 505 |
| LmnI | GCTCC | 3 cut(s) | 53, 590, 598 |
| Lsp1109I | GCAGC | 2 cut(s) | 172, 461 |
| MaeI | CTAG | 3 cut(s) | 9, 587, 689 |
| MalI | GATC | 5 cut(s) | 155, 207, 348, 399, 507 |
| MboI | GATC | 5 cut(s) | 153, 205, 346, 397, 505 |
| MboII | GAAGA | 2 cut(s) | 354, 595 |
| MflI | RGATCY | 1 cut(s) | 397 |
| MhlI | GDGCHC | 1 cut(s) | 595 |
| MlsI | TGGCCA | 1 cut(s) | 218 |
| MluCI | AATT | 3 cut(s) | 163, 234, 582 |
| MluNI | TGGCCA | 1 cut(s) | 218 |
| MlyI | GAGTC | 2 cut(s) | 68, 150 |
| MmeI | TCCRAC | 1 cut(s) | 552 |
| MnlI | CCTC | 7 cut(s) | 67, 129, 284, 387, 491, 606, 667 |
| Mox20I | TGGCCA | 1 cut(s) | 218 |
| MscI | TGGCCA | 1 cut(s) | 218 |
| MseI | TTAA | 3 cut(s) | 242, 306, 695 |
| MslI | CAYNNNNRTG | 2 cut(s) | 258, 670 |
| Msp20I | TGGCCA | 1 cut(s) | 218 |
| MspI | CCGG | 1 cut(s) | 386 |
| MspR9I | CCNGG | 3 cut(s) | 386, 628, 644 |
| MvaI | CCWGG | 2 cut(s) | 628, 644 |
| NciI | CCSGG | 1 cut(s) | 386 |
| NdeI | CATATG | 1 cut(s) | 68 |
| NdeII | GATC | 5 cut(s) | 153, 205, 346, 397, 505 |
| NlaIII | CATG | 5 cut(s) | 257, 268, 276, 343, 574 |
| NlaIV | GGNNCC | 4 cut(s) | 55, 374, 375, 641 |
| PagI | TCATGA | 1 cut(s) | 253 |
| PfoI | TCCNGGA | 2 cut(s) | 626, 642 |
| PkrI | GCNGC | 2 cut(s) | 187, 451 |
| PleI | GAGTC | 2 cut(s) | 68, 149 |
| PpsI | GAGTC | 2 cut(s) | 68, 149 |
| PpuMI | RGGWCCY | 2 cut(s) | 373, 640 |
| Psp124BI | GAGCTC | 1 cut(s) | 595 |
| Psp5II | RGGWCCY | 2 cut(s) | 373, 640 |
| Psp6I | CCWGG | 2 cut(s) | 626, 642 |
| PspFI | CCCAGC | 1 cut(s) | 419 |
| PspGI | CCWGG | 2 cut(s) | 626, 642 |
| PspN4I | GGNNCC | 4 cut(s) | 55, 374, 375, 641 |
| PspPI | GGNCC | 2 cut(s) | 373, 640 |
| PspPPI | RGGWCCY | 2 cut(s) | 373, 640 |
| PsuI | RGATCY | 1 cut(s) | 397 |
| RseI | CAYNNNNRTG | 2 cut(s) | 258, 670 |
| SacI | GAGCTC | 1 cut(s) | 595 |
| SaqAI | TTAA | 3 cut(s) | 242, 306, 695 |
| SatI | GCNGC | 2 cut(s) | 186, 450 |
| Sau3AI | GATC | 5 cut(s) | 153, 205, 346, 397, 505 |
| Sau96I | GGNCC | 2 cut(s) | 373, 640 |
| SchI | GAGTC | 2 cut(s) | 68, 150 |
| ScrFI | CCNGG | 3 cut(s) | 386, 628, 644 |
| SduI | GDGCHC | 1 cut(s) | 595 |
| SfcI | CTRYAG | 2 cut(s) | 379, 576 |
| SinI | GGWCC | 2 cut(s) | 373, 640 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 258, 670 |
| Sse9I | AATT | 3 cut(s) | 163, 234, 582 |
| SspMI | CTAG | 3 cut(s) | 9, 587, 689 |
| SstI | GAGCTC | 1 cut(s) | 595 |
| StyD4I | CCNGG | 3 cut(s) | 384, 626, 642 |
| TaaI | ACNGT | 3 cut(s) | 130, 322, 544 |
| TaqI | TCGA | 2 cut(s) | 365, 546 |
| TasI | AATT | 3 cut(s) | 163, 234, 582 |
| Tru1I | TTAA | 3 cut(s) | 242, 306, 695 |
| Tru9I | TTAA | 3 cut(s) | 242, 306, 695 |
| TscAI | CASTG | 3 cut(s) | 135, 216, 459 |
| TseI | GCWGC | 2 cut(s) | 185, 449 |
| TspDTI | ATGAA | 4 cut(s) | 176, 348, 595, 606 |
| TspRI | CASTG | 3 cut(s) | 135, 216, 459 |
| VpaK11BI | GGWCC | 2 cut(s) | 373, 640 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 119 |
| XapI | RAATTY | 2 cut(s) | 163, 582 |
| XmiI | GTMKAC | 1 cut(s) | 247 |
| XspI | CTAG | 3 cut(s) | 9, 587, 689 |