Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 262 |
| Acc36I | ACCTGC | 2 cut(s) | 262, 661 |
| AccB1I | GGYRCC | 1 cut(s) | 1127 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 574 |
| AccI | GTMKAC | 3 cut(s) | 262, 891, 1552 |
| AccIII | TCCGGA | 1 cut(s) | 604 |
| AciI | CCGC | 4 cut(s) | 103, 304, 350, 1329 |
| AclWI | GGATC | 4 cut(s) | 210, 454, 1390, 1452 |
| AcsI | RAATTY | 1 cut(s) | 942 |
| AcuI | CTGAAG | 2 cut(s) | 1156, 1562 |
| AcvI | CACGTG | 1 cut(s) | 72 |
| AdeI | CACNNNGTG | 1 cut(s) | 851 |
| AfaI | GTAC | 3 cut(s) | 249, 721, 1570 |
| AfeI | AGCGCT | 1 cut(s) | 547 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 99, 125, 574, 886, 969, 970 |
| AflIII | ACRYGT | 1 cut(s) | 187 |
| AgsI | TTSAA | 4 cut(s) | 1111, 1299, 1421, 1541 |
| AjnI | CCWGG | 5 cut(s) | 218, 963, 1103, 1500, 1632 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 515, 547 |
| AleI | CACNNNNGTG | 1 cut(s) | 965 |
| Alw21I | GWGCWC | 1 cut(s) | 490 |
| Alw26I | GTCTC | 7 cut(s) | 127, 354, 489, 558, 1094, 1204, 1539 |
| AlwI | GGATC | 4 cut(s) | 210, 454, 1390, 1452 |
| Aor13HI | TCCGGA | 1 cut(s) | 604 |
| Aor51HI | AGCGCT | 1 cut(s) | 547 |
| AoxI | GGCC | 5 cut(s) | 1186, 1308, 1457, 1471, 1612 |
| ApeKI | GCWGC | 6 cut(s) | 711, 824, 827, 1199, 1202, 1267 |
| ApoI | RAATTY | 1 cut(s) | 942 |
| AseI | ATTAAT | 1 cut(s) | 386 |
| AspLEI | GCGC | 3 cut(s) | 81, 108, 548 |
| AspS9I | GGNCC | 5 cut(s) | 649, 1309, 1331, 1457, 1629 |
| AsuC2I | CCSGG | 2 cut(s) | 87, 127 |
| AsuHPI | GGTGA | 4 cut(s) | 73, 197, 863, 1406 |
| AsuII | TTCGAA | 2 cut(s) | 858, 1404 |
| AvaII | GGWCC | 3 cut(s) | 649, 1331, 1629 |
| BanI | GGYRCC | 1 cut(s) | 1127 |
| BanII | GRGCYC | 1 cut(s) | 490 |
| BauI | CACGAG | 2 cut(s) | 597, 993 |
| BbrPI | CACGTG | 1 cut(s) | 72 |
| BbsI | GAAGAC | 1 cut(s) | 1162 |
| Bbv12I | GWGCWC | 1 cut(s) | 490 |
| BbvI | GCAGC | 6 cut(s) | 698, 836, 839, 1189, 1211, 1254 |
| BccI | CCATC | 7 cut(s) | 8, 174, 261, 1077, 1118, 1138, 1319 |
| BceAI | ACGGC | 1 cut(s) | 25 |
| BciT130I | CCWGG | 5 cut(s) | 220, 965, 1105, 1502, 1634 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BcnI | CCSGG | 2 cut(s) | 87, 127 |
| BcoDI | GTCTC | 7 cut(s) | 127, 354, 489, 558, 1094, 1204, 1539 |
| BfaI | CTAG | 8 cut(s) | 197, 357, 425, 492, 503, 1025, 1448, 1559 |
| BfoI | RGCGCY | 2 cut(s) | 109, 549 |
| BfuAI | ACCTGC | 2 cut(s) | 262, 661 |
| BisI | GCNGC | 7 cut(s) | 104, 712, 825, 828, 1200, 1203, 1268 |
| BlsI | GCNGC | 7 cut(s) | 105, 713, 826, 829, 1201, 1204, 1269 |
| BmcAI | AGTACT | 1 cut(s) | 249 |
| Bme1390I | CCNGG | 7 cut(s) | 87, 127, 220, 965, 1105, 1502, 1634 |
| Bme18I | GGWCC | 3 cut(s) | 649, 1331, 1629 |
| BmgT120I | GGNCC | 5 cut(s) | 649, 1309, 1331, 1457, 1629 |
| BmiI | GGNNCC | 5 cut(s) | 91, 651, 878, 1129, 1631 |
| BmrFI | CCNGG | 7 cut(s) | 87, 127, 220, 965, 1105, 1502, 1634 |
| BmsI | GCATC | 2 cut(s) | 237, 1387 |
| BpiI | GAAGAC | 1 cut(s) | 1162 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 234, 266 |
| BpmI | CTGGAG | 4 cut(s) | 241, 426, 697, 1484 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1313 |
| Bpu14I | TTCGAA | 2 cut(s) | 858, 1404 |
| BpuEI | CTTGAG | 1 cut(s) | 736 |
| BpuMI | CCSGG | 2 cut(s) | 87, 127 |
| BsaAI | YACGTR | 3 cut(s) | 58, 72, 895 |
| BsaI | GGTCTC | 4 cut(s) | 127, 558, 1094, 1204 |
| BsaJI | CCNNGG | 7 cut(s) | 41, 93, 218, 522, 963, 1632, 1633 |
| BsaWI | WCCGGW | 3 cut(s) | 118, 604, 1438 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 99, 125, 574, 886, 969, 970 |
| Bse1I | ACTGG | 2 cut(s) | 443, 1189 |
| Bse3DI | GCAATG | 3 cut(s) | 286, 437, 1123 |
| BseAI | TCCGGA | 1 cut(s) | 604 |
| BseBI | CCWGG | 5 cut(s) | 220, 965, 1105, 1502, 1634 |
| BseDI | CCNNGG | 7 cut(s) | 41, 93, 218, 522, 963, 1632, 1633 |
| BseGI | GGATG | 5 cut(s) | 166, 613, 780, 988, 1057 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 99, 125, 574, 886, 969, 970 |
| BseMI | GCAATG | 3 cut(s) | 286, 437, 1123 |
| BseMII | CTCAG | 2 cut(s) | 478, 1089 |
| BseNI | ACTGG | 2 cut(s) | 443, 1189 |
| BseRI | GAGGAG | 1 cut(s) | 1425 |
| BseXI | GCAGC | 6 cut(s) | 698, 836, 839, 1189, 1211, 1254 |
| BshFI | GGCC | 5 cut(s) | 1188, 1310, 1459, 1473, 1614 |
| BshNI | GGYRCC | 1 cut(s) | 1127 |
| BsiHKAI | GWGCWC | 1 cut(s) | 490 |
| BsiSI | CCGG | 5 cut(s) | 86, 119, 126, 605, 1439 |
| BslFI | GGGAC | 4 cut(s) | 320, 635, 1161, 1615 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 99, 125, 574, 886, 969, 970 |
| BsmAI | GTCTC | 7 cut(s) | 127, 354, 489, 558, 1094, 1204, 1539 |
| BsmBI | CGTCTC | 1 cut(s) | 354 |
| BsmFI | GGGAC | 4 cut(s) | 320, 635, 1161, 1615 |
| BsmI | GAATGC | 2 cut(s) | 646, 1400 |
| BsnI | GGCC | 5 cut(s) | 1188, 1310, 1459, 1473, 1614 |
| Bso31I | GGTCTC | 4 cut(s) | 127, 558, 1094, 1204 |
| Bsp119I | TTCGAA | 2 cut(s) | 858, 1404 |
| Bsp1286I | GDGCHC | 1 cut(s) | 490 |
| Bsp13I | TCCGGA | 1 cut(s) | 604 |
| Bsp143I | GATC | 6 cut(s) | 31, 66, 202, 459, 1382, 1444 |
| BspACI | CCGC | 4 cut(s) | 103, 304, 350, 1329 |
| BspANI | GGCC | 5 cut(s) | 1188, 1310, 1459, 1473, 1614 |
| BspCNI | CTCAG | 2 cut(s) | 477, 1090 |
| BspEI | TCCGGA | 1 cut(s) | 604 |
| BspLI | GGNNCC | 5 cut(s) | 91, 651, 878, 1129, 1631 |
| BspMI | ACCTGC | 2 cut(s) | 262, 661 |
| BspPI | GGATC | 4 cut(s) | 210, 454, 1390, 1452 |
| BspT104I | TTCGAA | 2 cut(s) | 858, 1404 |
| BspT107I | GGYRCC | 1 cut(s) | 1127 |
| BspTNI | GGTCTC | 4 cut(s) | 127, 558, 1094, 1204 |
| BsrDI | GCAATG | 3 cut(s) | 286, 437, 1123 |
| BsrI | ACTGG | 2 cut(s) | 443, 1189 |
| BssECI | CCNNGG | 7 cut(s) | 41, 93, 218, 522, 963, 1632, 1633 |
| BssMI | GATC | 6 cut(s) | 31, 66, 202, 459, 1382, 1444 |
| BssNAI | GTATAC | 1 cut(s) | 892 |
| BssSI | CACGAG | 2 cut(s) | 597, 993 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 522 |
| Bst1107I | GTATAC | 1 cut(s) | 892 |
| Bst2BI | CACGAG | 2 cut(s) | 597, 993 |
| Bst2UI | CCWGG | 5 cut(s) | 220, 965, 1105, 1502, 1634 |
| Bst4CI | ACNGT | 3 cut(s) | 8, 176, 311 |
| Bst6I | CTCTTC | 2 cut(s) | 1542, 1581 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1257 |
| BstBAI | YACGTR | 3 cut(s) | 58, 72, 895 |
| BstBI | TTCGAA | 2 cut(s) | 858, 1404 |
| BstC8I | GCNNGC | 5 cut(s) | 338, 630, 1022, 1253, 1354 |
| BstDEI | CTNAG | 5 cut(s) | 464, 476, 1098, 1151, 1313 |
| BstDSI | CCRYGG | 1 cut(s) | 41 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 97 |
| BstF5I | GGATG | 5 cut(s) | 166, 613, 780, 988, 1057 |
| BstH2I | RGCGCY | 2 cut(s) | 109, 549 |
| BstHHI | GCGC | 3 cut(s) | 81, 108, 548 |
| BstKTI | GATC | 6 cut(s) | 34, 69, 205, 462, 1385, 1447 |
| BstMAI | GTCTC | 7 cut(s) | 127, 354, 489, 558, 1094, 1204, 1539 |
| BstMBI | GATC | 6 cut(s) | 31, 66, 202, 459, 1382, 1444 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 508, 836, 1136, 1257, 1276 |
| BstNI | CCWGG | 5 cut(s) | 220, 965, 1105, 1502, 1634 |
| BstNSI | RCATGY | 2 cut(s) | 191, 750 |
| BstSCI | CCNGG | 7 cut(s) | 85, 125, 218, 963, 1103, 1500, 1632 |
| BstV1I | GCAGC | 6 cut(s) | 698, 836, 839, 1189, 1211, 1254 |
| BstV2I | GAAGAC | 1 cut(s) | 1162 |
| BstX2I | RGATCY | 1 cut(s) | 1444 |
| BstYI | RGATCY | 1 cut(s) | 1444 |
| BstZ17I | GTATAC | 1 cut(s) | 892 |
| BsuRI | GGCC | 5 cut(s) | 1188, 1310, 1459, 1473, 1614 |
| BtgI | CCRYGG | 1 cut(s) | 41 |
| BtsCI | GGATG | 5 cut(s) | 166, 613, 780, 988, 1057 |
| BtsI | GCAGTG | 1 cut(s) | 839 |
| BtsIMutI | CAGTG | 3 cut(s) | 181, 450, 839 |
| BveI | ACCTGC | 2 cut(s) | 262, 661 |
| Cac8I | GCNNGC | 5 cut(s) | 338, 630, 1022, 1253, 1354 |
| CfoI | GCGC | 3 cut(s) | 81, 108, 548 |
| Cfr13I | GGNCC | 5 cut(s) | 649, 1309, 1331, 1457, 1629 |
| CseI | GACGC | 2 cut(s) | 371, 676 |
| CsiI | ACCWGGT | 1 cut(s) | 1103 |
| Csp6I | GTAC | 3 cut(s) | 248, 720, 1569 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 23, 58 |
| CviAII | CATG | 8 cut(s) | 188, 684, 747, 1165, 1240, 1257, 1261, 1365 |
| CviQI | GTAC | 3 cut(s) | 248, 720, 1569 |
| DdeI | CTNAG | 5 cut(s) | 464, 476, 1098, 1151, 1313 |
| DpnI | GATC | 6 cut(s) | 33, 68, 204, 461, 1384, 1446 |
| DpnII | GATC | 6 cut(s) | 31, 66, 202, 459, 1382, 1444 |
| DraIII | CACNNNGTG | 1 cut(s) | 851 |
| Eam1104I | CTCTTC | 2 cut(s) | 1542, 1581 |
| EarI | CTCTTC | 2 cut(s) | 1542, 1581 |
| EciI | GGCGGA | 1 cut(s) | 1344 |
| Ecl136II | GAGCTC | 1 cut(s) | 488 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 522 |
| Eco147I | AGGCCT | 1 cut(s) | 1473 |
| Eco24I | GRGCYC | 1 cut(s) | 490 |
| Eco31I | GGTCTC | 4 cut(s) | 127, 558, 1094, 1204 |
| Eco32I | GATATC | 1 cut(s) | 298 |
| Eco47I | GGWCC | 3 cut(s) | 649, 1331, 1629 |
| Eco47III | AGCGCT | 1 cut(s) | 547 |
| Eco53kI | GAGCTC | 1 cut(s) | 488 |
| Eco57I | CTGAAG | 2 cut(s) | 1156, 1562 |
| Eco72I | CACGTG | 1 cut(s) | 72 |
| EcoICRI | GAGCTC | 1 cut(s) | 488 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 97 |
| EcoO109I | RGGNCCY | 2 cut(s) | 649, 1309 |
| EcoRII | CCWGG | 5 cut(s) | 218, 963, 1103, 1500, 1632 |
| EcoRV | GATATC | 1 cut(s) | 298 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 522 |
| EcoT22I | ATGCAT | 2 cut(s) | 1262, 1402 |
| EcoT38I | GRGCYC | 1 cut(s) | 490 |
| ErhI | CCWWGG | 2 cut(s) | 93, 522 |
| Esp3I | CGTCTC | 1 cut(s) | 354 |
| FaeI | CATG | 8 cut(s) | 191, 687, 750, 1168, 1243, 1260, 1264, 1368 |
| FaqI | GGGAC | 4 cut(s) | 320, 635, 1161, 1615 |
| FatI | CATG | 8 cut(s) | 187, 683, 746, 1164, 1239, 1256, 1260, 1364 |
| FauI | CCCGC | 1 cut(s) | 297 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| FblI | GTMKAC | 3 cut(s) | 262, 891, 1552 |
| Fnu4HI | GCNGC | 7 cut(s) | 104, 712, 825, 828, 1200, 1203, 1268 |
| FokI | GGATG | 5 cut(s) | 153, 620, 767, 975, 1044 |
| FriOI | GRGCYC | 1 cut(s) | 490 |
| Fsp4HI | GCNGC | 7 cut(s) | 104, 712, 825, 828, 1200, 1203, 1268 |
| FspBI | CTAG | 8 cut(s) | 197, 357, 425, 492, 503, 1025, 1448, 1559 |
| GlaI | GCGC | 3 cut(s) | 80, 107, 547 |
| GluI | GCNGC | 7 cut(s) | 104, 712, 825, 828, 1200, 1203, 1268 |
| GsuI | CTGGAG | 4 cut(s) | 241, 426, 697, 1484 |
| HaeII | RGCGCY | 2 cut(s) | 109, 549 |
| HaeIII | GGCC | 5 cut(s) | 1188, 1310, 1459, 1473, 1614 |
| HapII | CCGG | 5 cut(s) | 86, 119, 126, 605, 1439 |
| HgaI | GACGC | 2 cut(s) | 371, 676 |
| HhaI | GCGC | 3 cut(s) | 81, 108, 548 |
| Hin1II | CATG | 8 cut(s) | 191, 687, 750, 1168, 1243, 1260, 1264, 1368 |
| Hin6I | GCGC | 3 cut(s) | 79, 106, 546 |
| HinP1I | GCGC | 3 cut(s) | 79, 106, 546 |
| HincII | GTYRAC | 1 cut(s) | 1588 |
| HindII | GTYRAC | 1 cut(s) | 1588 |
| HindIII | AAGCTT | 1 cut(s) | 1542 |
| HinfI | GANTC | 3 cut(s) | 147, 323, 1429 |
| HpaII | CCGG | 5 cut(s) | 86, 119, 126, 605, 1439 |
| HphI | GGTGA | 4 cut(s) | 73, 197, 863, 1406 |
| Hpy166II | GTNNAC | 7 cut(s) | 263, 395, 515, 892, 1553, 1571, 1588 |
| Hpy188I | TCNGA | 4 cut(s) | 467, 1073, 1175, 1428 |
| Hpy188III | TCNNGA | 5 cut(s) | 605, 676, 995, 1036, 1291 |
| Hpy8I | GTNNAC | 7 cut(s) | 263, 395, 515, 892, 1553, 1571, 1588 |
| HpyAV | CCTTC | 5 cut(s) | 219, 230, 902, 968, 1415 |
| HpyCH4III | ACNGT | 3 cut(s) | 8, 176, 311 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 71, 894 |
| HpyCH4V | TGCA | 8 cut(s) | 644, 917, 1116, 1251, 1260, 1304, 1400, 1412 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 508, 836, 1136, 1257, 1276 |
| HpyF3I | CTNAG | 5 cut(s) | 464, 476, 1098, 1151, 1313 |
| HpySE526I | ACGT | 3 cut(s) | 57, 71, 894 |
| Hsp92II | CATG | 8 cut(s) | 191, 687, 750, 1168, 1243, 1260, 1264, 1368 |
| HspAI | GCGC | 3 cut(s) | 79, 106, 546 |
| Kpn2I | TCCGGA | 1 cut(s) | 604 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 6 cut(s) | 31, 66, 202, 459, 1382, 1444 |
| LmnI | GCTCC | 5 cut(s) | 445, 493, 595, 882, 1157 |
| Lsp1109I | GCAGC | 6 cut(s) | 698, 836, 839, 1189, 1211, 1254 |
| LweI | GCATC | 2 cut(s) | 237, 1387 |
| MabI | ACCWGGT | 1 cut(s) | 1103 |
| MaeI | CTAG | 8 cut(s) | 197, 357, 425, 492, 503, 1025, 1448, 1559 |
| MaeII | ACGT | 3 cut(s) | 57, 71, 894 |
| MaeIII | GTNAC | 5 cut(s) | 53, 61, 851, 895, 1367 |
| MalI | GATC | 6 cut(s) | 33, 68, 204, 461, 1384, 1446 |
| MboI | GATC | 6 cut(s) | 31, 66, 202, 459, 1382, 1444 |
| MboII | GAAGA | 5 cut(s) | 785, 872, 1162, 1529, 1568 |
| MfeI | CAATTG | 1 cut(s) | 35 |
| MflI | RGATCY | 1 cut(s) | 1444 |
| MhlI | GDGCHC | 1 cut(s) | 490 |
| MluCI | AATT | 7 cut(s) | 35, 383, 406, 740, 942, 1224, 1648 |
| MlyI | GAGTC | 2 cut(s) | 141, 317 |
| Mph1103I | ATGCAT | 2 cut(s) | 1262, 1402 |
| MroI | TCCGGA | 1 cut(s) | 604 |
| MseI | TTAA | 4 cut(s) | 386, 743, 1217, 1640 |
| MslI | CAYNNNNRTG | 2 cut(s) | 965, 993 |
| MspA1I | CMGCKG | 1 cut(s) | 1202 |
| MspI | CCGG | 5 cut(s) | 86, 119, 126, 605, 1439 |
| MspR9I | CCNGG | 7 cut(s) | 87, 127, 220, 965, 1105, 1502, 1634 |
| MunI | CAATTG | 1 cut(s) | 35 |
| Mva1269I | GAATGC | 2 cut(s) | 646, 1400 |
| MvaI | CCWGG | 5 cut(s) | 220, 965, 1105, 1502, 1634 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 508, 836, 1136, 1257, 1276 |
| NciI | CCSGG | 2 cut(s) | 87, 127 |
| NdeII | GATC | 6 cut(s) | 31, 66, 202, 459, 1382, 1444 |
| NlaIII | CATG | 8 cut(s) | 191, 687, 750, 1168, 1243, 1260, 1264, 1368 |
| NlaIV | GGNNCC | 5 cut(s) | 91, 651, 878, 1129, 1631 |
| NmuCI | GTSAC | 4 cut(s) | 61, 851, 895, 1367 |
| NsiI | ATGCAT | 2 cut(s) | 1262, 1402 |
| NspI | RCATGY | 2 cut(s) | 191, 750 |
| NspV | TTCGAA | 2 cut(s) | 858, 1404 |
| OliI | CACNNNNGTG | 1 cut(s) | 965 |
| PaqCI | CACCTGC | 1 cut(s) | 262 |
| PasI | CCCWGGG | 1 cut(s) | 1633 |
| PceI | AGGCCT | 1 cut(s) | 1473 |
| PciI | ACATGT | 1 cut(s) | 187 |
| PctI | GAATGC | 2 cut(s) | 646, 1400 |
| PfeI | GAWTC | 1 cut(s) | 1429 |
| PflFI | GACNNNGTC | 1 cut(s) | 1166 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 574 |
| PkrI | GCNGC | 7 cut(s) | 105, 713, 826, 829, 1201, 1204, 1269 |
| PleI | GAGTC | 2 cut(s) | 141, 317 |
| PmaCI | CACGTG | 1 cut(s) | 72 |
| PmlI | CACGTG | 1 cut(s) | 72 |
| PpsI | GAGTC | 2 cut(s) | 141, 317 |
| Ppu21I | YACGTR | 3 cut(s) | 58, 72, 895 |
| PpuMI | RGGWCCY | 1 cut(s) | 649 |
| PscI | ACATGT | 1 cut(s) | 187 |
| PshBI | ATTAAT | 1 cut(s) | 386 |
| Psp124BI | GAGCTC | 1 cut(s) | 490 |
| Psp5II | RGGWCCY | 1 cut(s) | 649 |
| Psp6I | CCWGG | 5 cut(s) | 218, 963, 1103, 1500, 1632 |
| PspCI | CACGTG | 1 cut(s) | 72 |
| PspGI | CCWGG | 5 cut(s) | 218, 963, 1103, 1500, 1632 |
| PspN4I | GGNNCC | 5 cut(s) | 91, 651, 878, 1129, 1631 |
| PspPI | GGNCC | 5 cut(s) | 649, 1309, 1331, 1457, 1629 |
| PspPPI | RGGWCCY | 1 cut(s) | 649 |
| PsuI | RGATCY | 1 cut(s) | 1444 |
| PsyI | GACNNNGTC | 1 cut(s) | 1166 |
| PvuII | CAGCTG | 1 cut(s) | 1202 |
| RsaI | GTAC | 3 cut(s) | 249, 721, 1570 |
| RsaNI | GTAC | 3 cut(s) | 248, 720, 1569 |
| RseI | CAYNNNNRTG | 2 cut(s) | 965, 993 |
| SacI | GAGCTC | 1 cut(s) | 490 |
| SaqAI | TTAA | 4 cut(s) | 386, 743, 1217, 1640 |
| SatI | GCNGC | 7 cut(s) | 104, 712, 825, 828, 1200, 1203, 1268 |
| Sau3AI | GATC | 6 cut(s) | 31, 66, 202, 459, 1382, 1444 |
| Sau96I | GGNCC | 5 cut(s) | 649, 1309, 1331, 1457, 1629 |
| ScaI | AGTACT | 1 cut(s) | 249 |
| SchI | GAGTC | 2 cut(s) | 141, 317 |
| ScrFI | CCNGG | 7 cut(s) | 87, 127, 220, 965, 1105, 1502, 1634 |
| SduI | GDGCHC | 1 cut(s) | 490 |
| SexAI | ACCWGGT | 1 cut(s) | 1103 |
| SfaNI | GCATC | 2 cut(s) | 237, 1387 |
| SfuI | TTCGAA | 2 cut(s) | 858, 1404 |
| SinI | GGWCC | 3 cut(s) | 649, 1331, 1629 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 965, 993 |
| SmlI | CTYRAG | 1 cut(s) | 715 |
| SmoI | CTYRAG | 1 cut(s) | 715 |
| Sse9I | AATT | 7 cut(s) | 35, 383, 406, 740, 942, 1224, 1648 |
| SseBI | AGGCCT | 1 cut(s) | 1473 |
| SsiI | CCGC | 4 cut(s) | 103, 304, 350, 1329 |
| SspI | AATATT | 1 cut(s) | 694 |
| SspMI | CTAG | 8 cut(s) | 197, 357, 425, 492, 503, 1025, 1448, 1559 |
| SstI | GAGCTC | 1 cut(s) | 490 |
| StuI | AGGCCT | 1 cut(s) | 1473 |
| StyD4I | CCNGG | 7 cut(s) | 85, 125, 218, 963, 1103, 1500, 1632 |
| StyI | CCWWGG | 2 cut(s) | 93, 522 |
| TaaI | ACNGT | 3 cut(s) | 8, 176, 311 |
| TaiI | ACGT | 3 cut(s) | 60, 74, 897 |
| TaqI | TCGA | 4 cut(s) | 706, 858, 955, 1404 |
| TasI | AATT | 7 cut(s) | 35, 383, 406, 740, 942, 1224, 1648 |
| TatI | WGTACW | 3 cut(s) | 247, 719, 1568 |
| TauI | GCSGC | 1 cut(s) | 106 |
| TfiI | GAWTC | 1 cut(s) | 1429 |
| Tru1I | TTAA | 4 cut(s) | 386, 743, 1217, 1640 |
| Tru9I | TTAA | 4 cut(s) | 386, 743, 1217, 1640 |
| TscAI | CASTG | 3 cut(s) | 181, 450, 846 |
| TseFI | GTSAC | 4 cut(s) | 61, 851, 895, 1367 |
| TseI | GCWGC | 6 cut(s) | 711, 824, 827, 1199, 1202, 1267 |
| Tsp45I | GTSAC | 4 cut(s) | 61, 851, 895, 1367 |
| TspDTI | ATGAA | 3 cut(s) | 201, 1068, 1277 |
| TspRI | CASTG | 3 cut(s) | 181, 450, 846 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1166 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 574 |
| VpaK11BI | GGWCC | 3 cut(s) | 649, 1331, 1629 |
| VspI | ATTAAT | 1 cut(s) | 386 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 97 |
| XapI | RAATTY | 1 cut(s) | 942 |
| XceI | RCATGY | 2 cut(s) | 191, 750 |
| XmiI | GTMKAC | 3 cut(s) | 262, 891, 1552 |
| XspI | CTAG | 8 cut(s) | 197, 357, 425, 492, 503, 1025, 1448, 1559 |
| ZrmI | AGTACT | 1 cut(s) | 249 |
| Zsp2I | ATGCAT | 2 cut(s) | 1262, 1402 |