Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 3 cut(s) | 238, 244, 278 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 315 |
| AflIII | ACRYGT | 1 cut(s) | 199 |
| AgsI | TTSAA | 1 cut(s) | 87 |
| AhlI | ACTAGT | 1 cut(s) | 239 |
| AjnI | CCWGG | 1 cut(s) | 210 |
| AluBI | AGCT | 1 cut(s) | 74 |
| AluI | AGCT | 1 cut(s) | 74 |
| Alw26I | GTCTC | 2 cut(s) | 18, 188 |
| AoxI | GGCC | 1 cut(s) | 147 |
| AseI | ATTAAT | 1 cut(s) | 297 |
| AspS9I | GGNCC | 1 cut(s) | 148 |
| AsuC2I | CCSGG | 1 cut(s) | 310 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| BccI | CCATC | 2 cut(s) | 224, 295 |
| BciT130I | CCWGG | 1 cut(s) | 212 |
| BcnI | CCSGG | 1 cut(s) | 310 |
| BcoDI | GTCTC | 2 cut(s) | 18, 188 |
| BcuI | ACTAGT | 1 cut(s) | 239 |
| BfaI | CTAG | 1 cut(s) | 240 |
| BlpI | GCTNAGC | 1 cut(s) | 321 |
| BmcAI | AGTACT | 1 cut(s) | 244 |
| Bme1390I | CCNGG | 2 cut(s) | 212, 310 |
| BmgT120I | GGNCC | 1 cut(s) | 148 |
| BmrFI | CCNGG | 2 cut(s) | 212, 310 |
| BmrI | ACTGGG | 1 cut(s) | 324 |
| BmuI | ACTGGG | 1 cut(s) | 324 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 321 |
| BpuMI | CCSGG | 1 cut(s) | 310 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 315 |
| Bse1I | ACTGG | 1 cut(s) | 330 |
| BseBI | CCWGG | 1 cut(s) | 212 |
| BseGI | GGATG | 3 cut(s) | 56, 220, 235 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 315 |
| BseMII | CTCAG | 2 cut(s) | 33, 312 |
| BseNI | ACTGG | 1 cut(s) | 330 |
| BshFI | GGCC | 1 cut(s) | 149 |
| BsiSI | CCGG | 1 cut(s) | 309 |
| BslFI | GGGAC | 1 cut(s) | 250 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 315 |
| BsmAI | GTCTC | 2 cut(s) | 18, 188 |
| BsmFI | GGGAC | 1 cut(s) | 250 |
| BsnI | GGCC | 1 cut(s) | 149 |
| Bsp1407I | TGTACA | 1 cut(s) | 276 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 321 |
| BspANI | GGCC | 1 cut(s) | 149 |
| BspCNI | CTCAG | 2 cut(s) | 34, 313 |
| BsrGI | TGTACA | 1 cut(s) | 276 |
| BsrI | ACTGG | 1 cut(s) | 330 |
| Bst2UI | CCWGG | 1 cut(s) | 212 |
| BstAUI | TGTACA | 1 cut(s) | 276 |
| BstDEI | CTNAG | 3 cut(s) | 42, 172, 321 |
| BstF5I | GGATG | 3 cut(s) | 56, 220, 235 |
| BstMAI | GTCTC | 2 cut(s) | 18, 188 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 155 |
| BstNI | CCWGG | 1 cut(s) | 212 |
| BstNSI | RCATGY | 1 cut(s) | 203 |
| BstSCI | CCNGG | 2 cut(s) | 210, 308 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 158 |
| BsuRI | GGCC | 1 cut(s) | 149 |
| BtsCI | GGATG | 3 cut(s) | 56, 220, 235 |
| Cfr13I | GGNCC | 1 cut(s) | 148 |
| Csp6I | GTAC | 3 cut(s) | 237, 243, 277 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 114, 149 |
| CviAII | CATG | 2 cut(s) | 152, 200 |
| CviJI | RGCY | 4 cut(s) | 74, 149, 320, 325 |
| CviKI_1 | RGCY | 4 cut(s) | 74, 149, 320, 325 |
| CviQI | GTAC | 3 cut(s) | 237, 243, 277 |
| DdeI | CTNAG | 3 cut(s) | 42, 172, 321 |
| EcoRII | CCWGG | 1 cut(s) | 210 |
| FaeI | CATG | 2 cut(s) | 155, 203 |
| FaiI | YATR | 5 cut(s) | 141, 153, 201, 225, 263 |
| FaqI | GGGAC | 1 cut(s) | 250 |
| FatI | CATG | 2 cut(s) | 151, 199 |
| FokI | GGATG | 3 cut(s) | 63, 227, 242 |
| FspBI | CTAG | 1 cut(s) | 240 |
| HaeIII | GGCC | 1 cut(s) | 149 |
| HapII | CCGG | 1 cut(s) | 309 |
| Hin1II | CATG | 2 cut(s) | 155, 203 |
| HindIII | AAGCTT | 1 cut(s) | 72 |
| HpaII | CCGG | 1 cut(s) | 309 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| HpyAV | CCTTC | 1 cut(s) | 102 |
| HpyCH4V | TGCA | 1 cut(s) | 14 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 155 |
| HpyF3I | CTNAG | 3 cut(s) | 42, 172, 321 |
| Hsp92II | CATG | 2 cut(s) | 155, 203 |
| LpnPI | CCDG | 4 cut(s) | 144, 197, 224, 322 |
| MaeI | CTAG | 1 cut(s) | 240 |
| MboII | GAAGA | 2 cut(s) | 44, 87 |
| MluCI | AATT | 3 cut(s) | 87, 280, 304 |
| MnlI | CCTC | 5 cut(s) | 37, 55, 220, 280, 336 |
| MseI | TTAA | 1 cut(s) | 297 |
| MspI | CCGG | 1 cut(s) | 309 |
| MspR9I | CCNGG | 2 cut(s) | 212, 310 |
| MvaI | CCWGG | 1 cut(s) | 212 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 155 |
| NciI | CCSGG | 1 cut(s) | 310 |
| NlaIII | CATG | 2 cut(s) | 155, 203 |
| NspI | RCATGY | 1 cut(s) | 203 |
| PciI | ACATGT | 1 cut(s) | 199 |
| PfoI | TCCNGGA | 1 cut(s) | 210 |
| PscI | ACATGT | 1 cut(s) | 199 |
| PshBI | ATTAAT | 1 cut(s) | 297 |
| Psp6I | CCWGG | 1 cut(s) | 210 |
| PspGI | CCWGG | 1 cut(s) | 210 |
| PspPI | GGNCC | 1 cut(s) | 148 |
| RsaI | GTAC | 3 cut(s) | 238, 244, 278 |
| RsaNI | GTAC | 3 cut(s) | 237, 243, 277 |
| SaqAI | TTAA | 1 cut(s) | 297 |
| Sau96I | GGNCC | 1 cut(s) | 148 |
| ScaI | AGTACT | 1 cut(s) | 244 |
| ScrFI | CCNGG | 2 cut(s) | 212, 310 |
| SetI | ASST | 3 cut(s) | 48, 76, 259 |
| SpeI | ACTAGT | 1 cut(s) | 239 |
| Sse9I | AATT | 3 cut(s) | 87, 280, 304 |
| SspMI | CTAG | 1 cut(s) | 240 |
| StyD4I | CCNGG | 2 cut(s) | 210, 308 |
| TaqI | TCGA | 1 cut(s) | 247 |
| TasI | AATT | 3 cut(s) | 87, 280, 304 |
| TatI | WGTACW | 3 cut(s) | 236, 242, 276 |
| Tru1I | TTAA | 1 cut(s) | 297 |
| Tru9I | TTAA | 1 cut(s) | 297 |
| TspDTI | ATGAA | 1 cut(s) | 87 |
| VspI | ATTAAT | 1 cut(s) | 297 |
| XceI | RCATGY | 1 cut(s) | 203 |
| XspI | CTAG | 1 cut(s) | 240 |
| ZrmI | AGTACT | 1 cut(s) | 244 |