ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 505 |
| AciI | CCGC | 4 cut(s) | 154, 268, 301, 326 |
| AcsI | RAATTY | 6 cut(s) | 91, 232, 261, 668, 1123, 1196 |
| AcuI | CTGAAG | 1 cut(s) | 1175 |
| AfaI | GTAC | 1 cut(s) | 442 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 507, 601, 1274 |
| AflIII | ACRYGT | 1 cut(s) | 180 |
| AgsI | TTSAA | 5 cut(s) | 80, 141, 409, 870, 973 |
| AjiI | CACGTC | 1 cut(s) | 1165 |
| AjnI | CCWGG | 1 cut(s) | 105 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 691, 723 |
| AluBI | AGCT | 7 cut(s) | 50, 254, 636, 781, 866, 1047, 1152 |
| AluI | AGCT | 7 cut(s) | 50, 254, 636, 781, 866, 1047, 1152 |
| Alw21I | GWGCWC | 1 cut(s) | 124 |
| Alw26I | GTCTC | 2 cut(s) | 478, 1317 |
| Ama87I | CYCGRG | 1 cut(s) | 637 |
| AoxI | GGCC | 1 cut(s) | 1155 |
| ApoI | RAATTY | 6 cut(s) | 91, 232, 261, 668, 1123, 1196 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1316, 1348 |
| AspA2I | CCTAGG | 1 cut(s) | 1069 |
| AspS9I | GGNCC | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 2 cut(s) | 347, 1085 |
| AsuNHI | GCTAGC | 1 cut(s) | 250 |
| AvaI | CYCGRG | 1 cut(s) | 637 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| AvrII | CCTAGG | 1 cut(s) | 1069 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 427, 459 |
| BauI | CACGAG | 1 cut(s) | 1128 |
| BbsI | GAAGAC | 1 cut(s) | 176 |
| Bbv12I | GWGCWC | 1 cut(s) | 124 |
| BccI | CCATC | 7 cut(s) | 367, 373, 482, 974, 1255, 1292, 1352 |
| BceAI | ACGGC | 2 cut(s) | 430, 1253 |
| BciT130I | CCWGG | 1 cut(s) | 107 |
| BcoDI | GTCTC | 2 cut(s) | 478, 1317 |
| BfaI | CTAG | 5 cut(s) | 251, 396, 854, 1070, 1149 |
| BfuAI | ACCTGC | 1 cut(s) | 505 |
| BglII | AGATCT | 1 cut(s) | 813 |
| BlnI | CCTAGG | 1 cut(s) | 1069 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmeT110I | CYCGRG | 1 cut(s) | 637 |
| BmgBI | CACGTC | 1 cut(s) | 1165 |
| BmgT120I | GGNCC | 1 cut(s) | 103 |
| BmiI | GGNNCC | 3 cut(s) | 334, 465, 1266 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmtI | GCTAGC | 1 cut(s) | 254 |
| BpiI | GAAGAC | 1 cut(s) | 176 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1111, 1143 |
| BpmI | CTGGAG | 3 cut(s) | 128, 844, 1254 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1391 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| Bsa29I | ATCGAT | 1 cut(s) | 1178 |
| BsaAI | YACGTR | 1 cut(s) | 1226 |
| BsaBI | GATNNNNATC | 1 cut(s) | 818 |
| BsaI | GGTCTC | 1 cut(s) | 478 |
| BsaJI | CCNNGG | 2 cut(s) | 467, 1069 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 101, 131, 817, 847 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 507, 601, 1274 |
| Bse1I | ACTGG | 2 cut(s) | 352, 1271 |
| Bse8I | GATNNNNATC | 1 cut(s) | 818 |
| BseBI | CCWGG | 1 cut(s) | 107 |
| BseCI | ATCGAT | 1 cut(s) | 1178 |
| BseDI | CCNNGG | 2 cut(s) | 467, 1069 |
| BseGI | GGATG | 6 cut(s) | 287, 574, 925, 985, 1006, 1266 |
| BseJI | GATNNNNATC | 1 cut(s) | 818 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 507, 601, 1274 |
| BseMII | CTCAG | 1 cut(s) | 646 |
| BseNI | ACTGG | 2 cut(s) | 352, 1271 |
| BseRI | GAGGAG | 5 cut(s) | 215, 533, 536, 617, 1257 |
| BsgI | GTGCAG | 1 cut(s) | 33 |
| BshFI | GGCC | 1 cut(s) | 1157 |
| BshVI | ATCGAT | 1 cut(s) | 1178 |
| BsiHKAI | GWGCWC | 1 cut(s) | 124 |
| BsiHKCI | CYCGRG | 1 cut(s) | 637 |
| BslFI | GGGAC | 2 cut(s) | 959, 1051 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 507, 601, 1274 |
| BsmAI | GTCTC | 2 cut(s) | 478, 1317 |
| BsmBI | CGTCTC | 1 cut(s) | 1317 |
| BsmFI | GGGAC | 2 cut(s) | 959, 1051 |
| BsmI | GAATGC | 1 cut(s) | 744 |
| BsnI | GGCC | 1 cut(s) | 1157 |
| Bso31I | GGTCTC | 1 cut(s) | 478 |
| BsoBI | CYCGRG | 1 cut(s) | 637 |
| Bsp1286I | GDGCHC | 1 cut(s) | 124 |
| Bsp143I | GATC | 3 cut(s) | 541, 748, 813 |
| BspACI | CCGC | 4 cut(s) | 154, 268, 301, 326 |
| BspANI | GGCC | 1 cut(s) | 1157 |
| BspCNI | CTCAG | 1 cut(s) | 645 |
| BspDI | ATCGAT | 1 cut(s) | 1178 |
| BspLI | GGNNCC | 3 cut(s) | 334, 465, 1266 |
| BspMI | ACCTGC | 1 cut(s) | 505 |
| BspOI | GCTAGC | 1 cut(s) | 254 |
| BspTNI | GGTCTC | 1 cut(s) | 478 |
| BsrI | ACTGG | 2 cut(s) | 352, 1271 |
| BssECI | CCNNGG | 2 cut(s) | 467, 1069 |
| BssMI | GATC | 3 cut(s) | 541, 748, 813 |
| BssSI | CACGAG | 1 cut(s) | 1128 |
| BssT1I | CCWWGG | 2 cut(s) | 467, 1069 |
| Bst2BI | CACGAG | 1 cut(s) | 1128 |
| Bst2UI | CCWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 1 cut(s) | 764 |
| Bst6I | CTCTTC | 1 cut(s) | 556 |
| BstBAI | YACGTR | 1 cut(s) | 1226 |
| BstC8I | GCNNGC | 2 cut(s) | 252, 301 |
| BstDEI | CTNAG | 3 cut(s) | 632, 810, 1391 |
| BstF5I | GGATG | 6 cut(s) | 287, 574, 925, 985, 1006, 1266 |
| BstKTI | GATC | 3 cut(s) | 544, 751, 816 |
| BstMAI | GTCTC | 2 cut(s) | 478, 1317 |
| BstMBI | GATC | 3 cut(s) | 541, 748, 813 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 151, 251 |
| BstNI | CCWGG | 1 cut(s) | 107 |
| BstNSI | RCATGY | 1 cut(s) | 307 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstV2I | GAAGAC | 1 cut(s) | 176 |
| BstX2I | RGATCY | 1 cut(s) | 813 |
| BstYI | RGATCY | 1 cut(s) | 813 |
| Bsu15I | ATCGAT | 1 cut(s) | 1178 |
| BsuRI | GGCC | 1 cut(s) | 1157 |
| BsuTUI | ATCGAT | 1 cut(s) | 1178 |
| BtrI | CACGTC | 1 cut(s) | 1165 |
| BtsCI | GGATG | 6 cut(s) | 287, 574, 925, 985, 1006, 1266 |
| BveI | ACCTGC | 1 cut(s) | 505 |
| Cac8I | GCNNGC | 2 cut(s) | 252, 301 |
| Cfr13I | GGNCC | 1 cut(s) | 103 |
| ClaI | ATCGAT | 1 cut(s) | 1178 |
| Csp6I | GTAC | 1 cut(s) | 441 |
| CviAII | CATG | 5 cut(s) | 67, 174, 304, 375, 732 |
| CviQI | GTAC | 1 cut(s) | 441 |
| DdeI | CTNAG | 3 cut(s) | 632, 810, 1391 |
| DpnI | GATC | 3 cut(s) | 543, 750, 815 |
| DpnII | GATC | 3 cut(s) | 541, 748, 813 |
| Eam1104I | CTCTTC | 1 cut(s) | 556 |
| EarI | CTCTTC | 1 cut(s) | 556 |
| Eco130I | CCWWGG | 2 cut(s) | 467, 1069 |
| Eco31I | GGTCTC | 1 cut(s) | 478 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 1 cut(s) | 1175 |
| Eco88I | CYCGRG | 1 cut(s) | 637 |
| EcoO109I | RGGNCCY | 1 cut(s) | 103 |
| EcoRI | GAATTC | 1 cut(s) | 1123 |
| EcoRII | CCWGG | 1 cut(s) | 105 |
| EcoT14I | CCWWGG | 2 cut(s) | 467, 1069 |
| ErhI | CCWWGG | 2 cut(s) | 467, 1069 |
| Esp3I | CGTCTC | 1 cut(s) | 1317 |
| FaeI | CATG | 5 cut(s) | 70, 177, 307, 378, 735 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1136, 1168 |
| FaqI | GGGAC | 2 cut(s) | 959, 1051 |
| FatI | CATG | 5 cut(s) | 66, 173, 303, 374, 731 |
| FauI | CCCGC | 2 cut(s) | 261, 308 |
| FokI | GGATG | 6 cut(s) | 274, 581, 932, 992, 993, 1273 |
| FspBI | CTAG | 5 cut(s) | 251, 396, 854, 1070, 1149 |
| GsuI | CTGGAG | 3 cut(s) | 128, 844, 1254 |
| HaeIII | GGCC | 1 cut(s) | 1157 |
| Hin1II | CATG | 5 cut(s) | 70, 177, 307, 378, 735 |
| HincII | GTYRAC | 2 cut(s) | 277, 760 |
| HindII | GTYRAC | 2 cut(s) | 277, 760 |
| HindIII | AAGCTT | 1 cut(s) | 779 |
| HinfI | GANTC | 5 cut(s) | 160, 796, 887, 923, 1352 |
| HpaI | GTTAAC | 1 cut(s) | 277 |
| HphI | GGTGA | 2 cut(s) | 347, 1085 |
| Hpy166II | GTNNAC | 3 cut(s) | 277, 760, 1401 |
| Hpy188I | TCNGA | 3 cut(s) | 478, 579, 1357 |
| Hpy188III | TCNNGA | 6 cut(s) | 340, 793, 823, 854, 1193, 1313 |
| Hpy8I | GTNNAC | 3 cut(s) | 277, 760, 1401 |
| HpyAV | CCTTC | 5 cut(s) | 66, 346, 1199, 1230, 1239 |
| HpyCH4III | ACNGT | 1 cut(s) | 764 |
| HpyCH4IV | ACGT | 4 cut(s) | 182, 586, 1164, 1225 |
| HpyCH4V | TGCA | 6 cut(s) | 14, 704, 806, 934, 1055, 1253 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 151, 251 |
| HpyF3I | CTNAG | 3 cut(s) | 632, 810, 1391 |
| HpySE526I | ACGT | 4 cut(s) | 182, 586, 1164, 1225 |
| Hsp92II | CATG | 5 cut(s) | 70, 177, 307, 378, 735 |
| KspAI | GTTAAC | 1 cut(s) | 277 |
| Kzo9I | GATC | 3 cut(s) | 541, 748, 813 |
| LmnI | GCTCC | 4 cut(s) | 109, 469, 1270, 1379 |
| MaeI | CTAG | 5 cut(s) | 251, 396, 854, 1070, 1149 |
| MaeII | ACGT | 4 cut(s) | 182, 586, 1164, 1225 |
| MaeIII | GTNAC | 3 cut(s) | 503, 833, 1160 |
| MalI | GATC | 3 cut(s) | 543, 750, 815 |
| MboI | GATC | 3 cut(s) | 541, 748, 813 |
| MboII | GAAGA | 6 cut(s) | 169, 181, 536, 543, 787, 808 |
| MflI | RGATCY | 1 cut(s) | 813 |
| MhlI | GDGCHC | 1 cut(s) | 124 |
| MmeI | TCCRAC | 1 cut(s) | 1255 |
| MseI | TTAA | 3 cut(s) | 83, 237, 276 |
| MslI | CAYNNNNRTG | 2 cut(s) | 71, 730 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| Mva1269I | GAATGC | 1 cut(s) | 744 |
| MvaI | CCWGG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 151, 251 |
| NdeII | GATC | 3 cut(s) | 541, 748, 813 |
| NheI | GCTAGC | 1 cut(s) | 250 |
| NlaIII | CATG | 5 cut(s) | 70, 177, 307, 378, 735 |
| NlaIV | GGNNCC | 3 cut(s) | 334, 465, 1266 |
| NmuCI | GTSAC | 2 cut(s) | 833, 1160 |
| NspI | RCATGY | 1 cut(s) | 307 |
| PaeR7I | CTCGAG | 1 cut(s) | 637 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 583 |
| PctI | GAATGC | 1 cut(s) | 744 |
| PfeI | GAWTC | 5 cut(s) | 160, 796, 887, 923, 1352 |
| Ppu21I | YACGTR | 1 cut(s) | 1226 |
| PpuMI | RGGWCCY | 1 cut(s) | 103 |
| Psp5II | RGGWCCY | 1 cut(s) | 103 |
| Psp6I | CCWGG | 1 cut(s) | 105 |
| PspGI | CCWGG | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 3 cut(s) | 334, 465, 1266 |
| PspPI | GGNCC | 1 cut(s) | 103 |
| PspPPI | RGGWCCY | 1 cut(s) | 103 |
| PspXI | VCTCGAGB | 1 cut(s) | 637 |
| PsuI | RGATCY | 1 cut(s) | 813 |
| RsaI | GTAC | 1 cut(s) | 442 |
| RsaNI | GTAC | 1 cut(s) | 441 |
| RseI | CAYNNNNRTG | 2 cut(s) | 71, 730 |
| SaqAI | TTAA | 3 cut(s) | 83, 237, 276 |
| Sau3AI | GATC | 3 cut(s) | 541, 748, 813 |
| Sau96I | GGNCC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SduI | GDGCHC | 1 cut(s) | 124 |
| Sfr274I | CTCGAG | 1 cut(s) | 637 |
| SinI | GGWCC | 1 cut(s) | 103 |
| SlaI | CTCGAG | 1 cut(s) | 637 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 71, 730 |
| SmlI | CTYRAG | 2 cut(s) | 45, 637 |
| SmoI | CTYRAG | 2 cut(s) | 45, 637 |
| SsiI | CCGC | 4 cut(s) | 154, 268, 301, 326 |
| SspI | AATATT | 2 cut(s) | 320, 841 |
| SspMI | CTAG | 5 cut(s) | 251, 396, 854, 1070, 1149 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| StyI | CCWWGG | 2 cut(s) | 467, 1069 |
| TaaI | ACNGT | 1 cut(s) | 764 |
| TaiI | ACGT | 4 cut(s) | 185, 589, 1167, 1228 |
| TaqI | TCGA | 4 cut(s) | 230, 638, 736, 1178 |
| TfiI | GAWTC | 5 cut(s) | 160, 796, 887, 923, 1352 |
| Tru1I | TTAA | 3 cut(s) | 83, 237, 276 |
| Tru9I | TTAA | 3 cut(s) | 83, 237, 276 |
| TseFI | GTSAC | 2 cut(s) | 833, 1160 |
| Tsp45I | GTSAC | 2 cut(s) | 833, 1160 |
| TspDTI | ATGAA | 5 cut(s) | 152, 808, 936, 995, 1196 |
| TspGWI | ACGGA | 1 cut(s) | 1341 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| XapI | RAATTY | 6 cut(s) | 91, 232, 261, 668, 1123, 1196 |
| XbaI | TCTAGA | 1 cut(s) | 853 |
| XceI | RCATGY | 1 cut(s) | 307 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 372 |
| XhoI | CTCGAG | 1 cut(s) | 637 |
| XmaJI | CCTAGG | 1 cut(s) | 1069 |
| XspI | CTAG | 5 cut(s) | 251, 396, 854, 1070, 1149 |