Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 31 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 589 |
| Acc36I | ACCTGC | 1 cut(s) | 31 |
| AciI | CCGC | 4 cut(s) | 212, 495, 564, 710 |
| AclI | AACGTT | 1 cut(s) | 615 |
| AclWI | GGATC | 1 cut(s) | 71 |
| AcoI | YGGCCR | 1 cut(s) | 457 |
| AfaI | GTAC | 1 cut(s) | 503 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 63, 138 |
| AgsI | TTSAA | 1 cut(s) | 326 |
| AjnI | CCWGG | 2 cut(s) | 315, 406 |
| AluBI | AGCT | 3 cut(s) | 8, 240, 398 |
| AluI | AGCT | 3 cut(s) | 8, 240, 398 |
| Alw21I | GWGCWC | 1 cut(s) | 242 |
| Alw26I | GTCTC | 1 cut(s) | 141 |
| AlwI | GGATC | 1 cut(s) | 71 |
| Ama87I | CYCGRG | 2 cut(s) | 138, 661 |
| AoxI | GGCC | 2 cut(s) | 107, 457 |
| ApeKI | GCWGC | 1 cut(s) | 395 |
| AseI | ATTAAT | 1 cut(s) | 218 |
| AspLEI | GCGC | 1 cut(s) | 534 |
| AspS9I | GGNCC | 1 cut(s) | 695 |
| AsuHPI | GGTGA | 2 cut(s) | 59, 680 |
| AvaI | CYCGRG | 2 cut(s) | 138, 661 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| BanII | GRGCYC | 1 cut(s) | 242 |
| BauI | CACGAG | 1 cut(s) | 520 |
| Bbv12I | GWGCWC | 1 cut(s) | 242 |
| BbvI | GCAGC | 1 cut(s) | 407 |
| BccI | CCATC | 2 cut(s) | 30, 44 |
| BceAI | ACGGC | 1 cut(s) | 488 |
| BciT130I | CCWGG | 2 cut(s) | 317, 408 |
| BciVI | GTATCC | 2 cut(s) | 78, 166 |
| BcoDI | GTCTC | 1 cut(s) | 141 |
| BfaI | CTAG | 4 cut(s) | 90, 300, 372, 449 |
| BfoI | RGCGCY | 1 cut(s) | 535 |
| BfuAI | ACCTGC | 1 cut(s) | 31 |
| BfuI | GTATCC | 2 cut(s) | 78, 166 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 569 |
| BglII | AGATCT | 3 cut(s) | 92, 245, 302 |
| BisI | GCNGC | 2 cut(s) | 396, 564 |
| BlsI | GCNGC | 2 cut(s) | 397, 565 |
| Bme1390I | CCNGG | 2 cut(s) | 317, 408 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmeT110I | CYCGRG | 2 cut(s) | 138, 661 |
| BmgT120I | GGNCC | 1 cut(s) | 695 |
| BmiI | GGNNCC | 1 cut(s) | 55 |
| BmrFI | CCNGG | 2 cut(s) | 317, 408 |
| BmsI | GCATC | 6 cut(s) | 199, 268, 359, 550, 608, 615 |
| Bpu10I | CCTNAGC | 2 cut(s) | 9, 282 |
| BpuEI | CTTGAG | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 4 cut(s) | 80, 470, 567, 698 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 539, 569, 697 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 63, 138 |
| Bse118I | RCCGGY | 1 cut(s) | 455 |
| BseBI | CCWGG | 2 cut(s) | 317, 408 |
| BseDI | CCNNGG | 4 cut(s) | 80, 470, 567, 698 |
| BseGI | GGATG | 2 cut(s) | 125, 214 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 63, 138 |
| BseMII | CTCAG | 1 cut(s) | 692 |
| BseRI | GAGGAG | 1 cut(s) | 46 |
| BseX3I | CGGCCG | 1 cut(s) | 457 |
| BseXI | GCAGC | 1 cut(s) | 407 |
| Bsh1285I | CGRYCG | 1 cut(s) | 460 |
| BshFI | GGCC | 2 cut(s) | 109, 459 |
| BsiEI | CGRYCG | 1 cut(s) | 460 |
| BsiHKAI | GWGCWC | 1 cut(s) | 242 |
| BsiHKCI | CYCGRG | 2 cut(s) | 138, 661 |
| BsiSI | CCGG | 1 cut(s) | 456 |
| BslFI | GGGAC | 1 cut(s) | 493 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 63, 138 |
| BsmAI | GTCTC | 1 cut(s) | 141 |
| BsmFI | GGGAC | 1 cut(s) | 493 |
| BsnI | GGCC | 2 cut(s) | 109, 459 |
| BsoBI | CYCGRG | 2 cut(s) | 138, 661 |
| Bsp1286I | GDGCHC | 1 cut(s) | 242 |
| Bsp1407I | TGTACA | 1 cut(s) | 501 |
| Bsp143I | GATC | 4 cut(s) | 76, 92, 245, 302 |
| Bsp19I | CCATGG | 1 cut(s) | 80 |
| BspACI | CCGC | 4 cut(s) | 212, 495, 564, 710 |
| BspANI | GGCC | 2 cut(s) | 109, 459 |
| BspCNI | CTCAG | 1 cut(s) | 691 |
| BspLI | GGNNCC | 1 cut(s) | 55 |
| BspMI | ACCTGC | 1 cut(s) | 31 |
| BspPI | GGATC | 1 cut(s) | 71 |
| BsrFI | RCCGGY | 1 cut(s) | 455 |
| BsrGI | TGTACA | 1 cut(s) | 501 |
| BssAI | RCCGGY | 1 cut(s) | 455 |
| BssECI | CCNNGG | 4 cut(s) | 80, 470, 567, 698 |
| BssMI | GATC | 4 cut(s) | 76, 92, 245, 302 |
| BssSI | CACGAG | 1 cut(s) | 520 |
| BssT1I | CCWWGG | 3 cut(s) | 80, 567, 698 |
| Bst2BI | CACGAG | 1 cut(s) | 520 |
| Bst2UI | CCWGG | 2 cut(s) | 317, 408 |
| Bst4CI | ACNGT | 1 cut(s) | 184 |
| BstAUI | TGTACA | 1 cut(s) | 501 |
| BstDEI | CTNAG | 3 cut(s) | 9, 282, 678 |
| BstDSI | CCRYGG | 2 cut(s) | 80, 470 |
| BstF5I | GGATG | 2 cut(s) | 125, 214 |
| BstH2I | RGCGCY | 1 cut(s) | 535 |
| BstHHI | GCGC | 1 cut(s) | 534 |
| BstKTI | GATC | 4 cut(s) | 79, 95, 248, 305 |
| BstMAI | GTCTC | 1 cut(s) | 141 |
| BstMBI | GATC | 4 cut(s) | 76, 92, 245, 302 |
| BstMCI | CGRYCG | 1 cut(s) | 460 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 569, 596, 709 |
| BstNI | CCWGG | 2 cut(s) | 317, 408 |
| BstSCI | CCNGG | 2 cut(s) | 315, 406 |
| BstV1I | GCAGC | 1 cut(s) | 407 |
| BstX2I | RGATCY | 4 cut(s) | 76, 92, 245, 302 |
| BstYI | RGATCY | 4 cut(s) | 76, 92, 245, 302 |
| BstZI | CGGCCG | 1 cut(s) | 457 |
| BsuI | GTATCC | 2 cut(s) | 78, 166 |
| BsuRI | GGCC | 2 cut(s) | 109, 459 |
| BtgI | CCRYGG | 2 cut(s) | 80, 470 |
| BtsCI | GGATG | 2 cut(s) | 125, 214 |
| BtsIMutI | CAGTG | 1 cut(s) | 180 |
| BveI | ACCTGC | 1 cut(s) | 31 |
| CfoI | GCGC | 1 cut(s) | 534 |
| Cfr10I | RCCGGY | 1 cut(s) | 455 |
| Cfr13I | GGNCC | 1 cut(s) | 695 |
| CseI | GACGC | 1 cut(s) | 579 |
| Csp6I | GTAC | 1 cut(s) | 502 |
| CviAII | CATG | 4 cut(s) | 81, 428, 610, 629 |
| CviQI | GTAC | 1 cut(s) | 502 |
| DdeI | CTNAG | 3 cut(s) | 9, 282, 678 |
| DpnI | GATC | 4 cut(s) | 78, 94, 247, 304 |
| DpnII | GATC | 4 cut(s) | 76, 92, 245, 302 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 589 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 589 |
| EaeI | YGGCCR | 1 cut(s) | 457 |
| EagI | CGGCCG | 1 cut(s) | 457 |
| Ecl136II | GAGCTC | 1 cut(s) | 240 |
| EclXI | CGGCCG | 1 cut(s) | 457 |
| Eco130I | CCWWGG | 3 cut(s) | 80, 567, 698 |
| Eco147I | AGGCCT | 1 cut(s) | 109 |
| Eco24I | GRGCYC | 1 cut(s) | 242 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| Eco52I | CGGCCG | 1 cut(s) | 457 |
| Eco53kI | GAGCTC | 1 cut(s) | 240 |
| Eco88I | CYCGRG | 2 cut(s) | 138, 661 |
| EcoICRI | GAGCTC | 1 cut(s) | 240 |
| EcoRII | CCWGG | 2 cut(s) | 315, 406 |
| EcoT14I | CCWWGG | 3 cut(s) | 80, 567, 698 |
| EcoT22I | ATGCAT | 2 cut(s) | 601, 630 |
| EcoT38I | GRGCYC | 1 cut(s) | 242 |
| ErhI | CCWWGG | 3 cut(s) | 80, 567, 698 |
| FaeI | CATG | 4 cut(s) | 84, 431, 613, 632 |
| FaiI | YATR | 8 cut(s) | 82, 312, 429, 500, 558, 611, 621, 630 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 275, 307, 518, 550 |
| FaqI | GGGAC | 1 cut(s) | 493 |
| FatI | CATG | 4 cut(s) | 80, 427, 609, 628 |
| Fnu4HI | GCNGC | 2 cut(s) | 396, 564 |
| FokI | GGATG | 2 cut(s) | 112, 221 |
| FriOI | GRGCYC | 1 cut(s) | 242 |
| Fsp4HI | GCNGC | 2 cut(s) | 396, 564 |
| FspBI | CTAG | 4 cut(s) | 90, 300, 372, 449 |
| GlaI | GCGC | 1 cut(s) | 533 |
| GluI | GCNGC | 2 cut(s) | 396, 564 |
| HaeII | RGCGCY | 1 cut(s) | 535 |
| HaeIII | GGCC | 2 cut(s) | 109, 459 |
| HapII | CCGG | 1 cut(s) | 456 |
| HgaI | GACGC | 1 cut(s) | 579 |
| HhaI | GCGC | 1 cut(s) | 534 |
| Hin1II | CATG | 4 cut(s) | 84, 431, 613, 632 |
| Hin6I | GCGC | 1 cut(s) | 532 |
| HinP1I | GCGC | 1 cut(s) | 532 |
| HinfI | GANTC | 3 cut(s) | 200, 288, 676 |
| HpaII | CCGG | 1 cut(s) | 456 |
| HphI | GGTGA | 2 cut(s) | 59, 680 |
| Hpy166II | GTNNAC | 1 cut(s) | 519 |
| Hpy188I | TCNGA | 5 cut(s) | 35, 66, 120, 364, 681 |
| Hpy188III | TCNNGA | 4 cut(s) | 243, 254, 444, 663 |
| Hpy8I | GTNNAC | 1 cut(s) | 519 |
| HpyCH4III | ACNGT | 1 cut(s) | 184 |
| HpyCH4IV | ACGT | 2 cut(s) | 478, 615 |
| HpyCH4V | TGCA | 4 cut(s) | 350, 599, 609, 628 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 569, 596, 709 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 282, 678 |
| HpySE526I | ACGT | 2 cut(s) | 478, 615 |
| Hsp92II | CATG | 4 cut(s) | 84, 431, 613, 632 |
| HspAI | GCGC | 1 cut(s) | 532 |
| Kzo9I | GATC | 4 cut(s) | 76, 92, 245, 302 |
| LmnI | GCTCC | 1 cut(s) | 59 |
| LpnPI | CCDG | 9 cut(s) | 26, 267, 302, 329, 339, 354, 393, 420, 469 |
| Lsp1109I | GCAGC | 1 cut(s) | 407 |
| LweI | GCATC | 6 cut(s) | 199, 268, 359, 550, 608, 615 |
| MaeI | CTAG | 4 cut(s) | 90, 300, 372, 449 |
| MaeII | ACGT | 2 cut(s) | 478, 615 |
| MaeIII | GTNAC | 1 cut(s) | 580 |
| MalI | GATC | 4 cut(s) | 78, 94, 247, 304 |
| MboI | GATC | 4 cut(s) | 76, 92, 245, 302 |
| MflI | RGATCY | 4 cut(s) | 76, 92, 245, 302 |
| MhlI | GDGCHC | 1 cut(s) | 242 |
| MluCI | AATT | 3 cut(s) | 153, 215, 219 |
| MlyI | GAGTC | 3 cut(s) | 194, 297, 670 |
| MnlI | CCTC | 8 cut(s) | 18, 67, 139, 358, 451, 474, 522, 659 |
| Mph1103I | ATGCAT | 2 cut(s) | 601, 630 |
| MseI | TTAA | 3 cut(s) | 152, 218, 552 |
| MslI | CAYNNNNRTG | 2 cut(s) | 276, 604 |
| MspI | CCGG | 1 cut(s) | 456 |
| MspR9I | CCNGG | 2 cut(s) | 317, 408 |
| MvaI | CCWGG | 2 cut(s) | 317, 408 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 569, 596, 709 |
| NcoI | CCATGG | 1 cut(s) | 80 |
| NdeII | GATC | 4 cut(s) | 76, 92, 245, 302 |
| NlaIII | CATG | 4 cut(s) | 84, 431, 613, 632 |
| NlaIV | GGNNCC | 1 cut(s) | 55 |
| NmuCI | GTSAC | 1 cut(s) | 580 |
| NsiI | ATGCAT | 2 cut(s) | 601, 630 |
| PaqCI | CACCTGC | 1 cut(s) | 31 |
| PceI | AGGCCT | 1 cut(s) | 109 |
| PflFI | GACNNNGTC | 1 cut(s) | 182 |
| PkrI | GCNGC | 2 cut(s) | 397, 565 |
| PleI | GAGTC | 3 cut(s) | 194, 296, 670 |
| PpsI | GAGTC | 3 cut(s) | 194, 296, 670 |
| PshBI | ATTAAT | 1 cut(s) | 218 |
| Psp124BI | GAGCTC | 1 cut(s) | 242 |
| Psp1406I | AACGTT | 1 cut(s) | 615 |
| Psp6I | CCWGG | 2 cut(s) | 315, 406 |
| PspGI | CCWGG | 2 cut(s) | 315, 406 |
| PspN4I | GGNNCC | 1 cut(s) | 55 |
| PspPI | GGNCC | 1 cut(s) | 695 |
| PsuI | RGATCY | 4 cut(s) | 76, 92, 245, 302 |
| PsyI | GACNNNGTC | 1 cut(s) | 182 |
| RsaI | GTAC | 1 cut(s) | 503 |
| RsaNI | GTAC | 1 cut(s) | 502 |
| RseI | CAYNNNNRTG | 2 cut(s) | 276, 604 |
| SacI | GAGCTC | 1 cut(s) | 242 |
| SaqAI | TTAA | 3 cut(s) | 152, 218, 552 |
| SatI | GCNGC | 2 cut(s) | 396, 564 |
| Sau3AI | GATC | 4 cut(s) | 76, 92, 245, 302 |
| Sau96I | GGNCC | 1 cut(s) | 695 |
| SchI | GAGTC | 3 cut(s) | 194, 297, 670 |
| ScrFI | CCNGG | 2 cut(s) | 317, 408 |
| SduI | GDGCHC | 1 cut(s) | 242 |
| SfaNI | GCATC | 6 cut(s) | 199, 268, 359, 550, 608, 615 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 276, 604 |
| SmlI | CTYRAG | 1 cut(s) | 241 |
| SmoI | CTYRAG | 1 cut(s) | 241 |
| Sse9I | AATT | 3 cut(s) | 153, 215, 219 |
| SseBI | AGGCCT | 1 cut(s) | 109 |
| SsiI | CCGC | 4 cut(s) | 212, 495, 564, 710 |
| SspMI | CTAG | 4 cut(s) | 90, 300, 372, 449 |
| SstI | GAGCTC | 1 cut(s) | 242 |
| StuI | AGGCCT | 1 cut(s) | 109 |
| StyD4I | CCNGG | 2 cut(s) | 315, 406 |
| StyI | CCWWGG | 3 cut(s) | 80, 567, 698 |
| TaaI | ACNGT | 1 cut(s) | 184 |
| TaiI | ACGT | 2 cut(s) | 481, 618 |
| TaqI | TCGA | 1 cut(s) | 576 |
| TasI | AATT | 3 cut(s) | 153, 215, 219 |
| TatI | WGTACW | 1 cut(s) | 501 |
| TauI | GCSGC | 1 cut(s) | 566 |
| Tru1I | TTAA | 3 cut(s) | 152, 218, 552 |
| Tru9I | TTAA | 3 cut(s) | 152, 218, 552 |
| TscAI | CASTG | 1 cut(s) | 187 |
| TseFI | GTSAC | 1 cut(s) | 580 |
| TseI | GCWGC | 1 cut(s) | 395 |
| Tsp45I | GTSAC | 1 cut(s) | 580 |
| TspDTI | ATGAA | 3 cut(s) | 626, 645, 663 |
| TspRI | CASTG | 1 cut(s) | 187 |
| Tth111I | GACNNNGTC | 1 cut(s) | 182 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| VspI | ATTAAT | 1 cut(s) | 218 |
| XspI | CTAG | 4 cut(s) | 90, 300, 372, 449 |
| Zsp2I | ATGCAT | 2 cut(s) | 601, 630 |