ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 69 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1712 |
| AatII | GACGTC | 1 cut(s) | 1716 |
| Acc36I | ACCTGC | 4 cut(s) | 394, 418, 1889, 1974 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 240 |
| AccBSI | CCGCTC | 1 cut(s) | 1591 |
| AciI | CCGC | 6 cut(s) | 476, 895, 1167, 1591, 1763, 1811 |
| AclWI | GGATC | 2 cut(s) | 1808, 1821 |
| AcsI | RAATTY | 4 cut(s) | 103, 685, 719, 997 |
| AcuI | CTGAAG | 1 cut(s) | 2081 |
| AcyI | GRCGYC | 1 cut(s) | 1713 |
| AfaI | GTAC | 1 cut(s) | 50 |
| AfeI | AGCGCT | 1 cut(s) | 1575 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 166, 240, 338, 560, 667, 1983 |
| AflIII | ACRYGT | 1 cut(s) | 604 |
| AjnI | CCWGG | 2 cut(s) | 1296, 1932 |
| Alw26I | GTCTC | 3 cut(s) | 9, 1698, 1793 |
| AlwI | GGATC | 2 cut(s) | 1808, 1821 |
| Ama87I | CYCGRG | 1 cut(s) | 849 |
| Aor51HI | AGCGCT | 1 cut(s) | 1575 |
| AoxI | GGCC | 4 cut(s) | 314, 374, 551, 2028 |
| ApoI | RAATTY | 4 cut(s) | 103, 685, 719, 997 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1563 |
| AspLEI | GCGC | 2 cut(s) | 786, 1576 |
| AspS9I | GGNCC | 3 cut(s) | 344, 374, 1153 |
| AsuC2I | CCSGG | 1 cut(s) | 1661 |
| AsuHPI | GGTGA | 1 cut(s) | 1931 |
| AvaI | CYCGRG | 1 cut(s) | 849 |
| AvaII | GGWCC | 2 cut(s) | 344, 1153 |
| BaeGI | GKGCMC | 1 cut(s) | 1237 |
| BamHI | GGATCC | 1 cut(s) | 1813 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1548, 1580 |
| BbsI | GAAGAC | 1 cut(s) | 1778 |
| BbvCI | CCTCAGC | 1 cut(s) | 936 |
| BccI | CCATC | 4 cut(s) | 425, 553, 834, 1272 |
| BceAI | ACGGC | 2 cut(s) | 329, 1191 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1601, 1635, 2066, 2100 |
| BciT130I | CCWGG | 2 cut(s) | 1298, 1934 |
| BciVI | GTATCC | 1 cut(s) | 976 |
| BcnI | CCSGG | 1 cut(s) | 1661 |
| BcoDI | GTCTC | 3 cut(s) | 9, 1698, 1793 |
| BfaI | CTAG | 4 cut(s) | 318, 368, 378, 1631 |
| BfmI | CTRYAG | 6 cut(s) | 297, 357, 432, 492, 1554, 2075 |
| BfoI | RGCGCY | 2 cut(s) | 787, 1577 |
| BfuAI | ACCTGC | 4 cut(s) | 394, 418, 1889, 1974 |
| BfuI | GTATCC | 1 cut(s) | 976 |
| BisI | GCNGC | 1 cut(s) | 1167 |
| BlpI | GCTNAGC | 1 cut(s) | 1136 |
| BlsI | GCNGC | 1 cut(s) | 1168 |
| BmcAI | AGTACT | 1 cut(s) | 50 |
| Bme1390I | CCNGG | 3 cut(s) | 1298, 1661, 1934 |
| Bme18I | GGWCC | 2 cut(s) | 344, 1153 |
| BmeT110I | CYCGRG | 1 cut(s) | 849 |
| BmgT120I | GGNCC | 3 cut(s) | 344, 374, 1153 |
| BmiI | GGNNCC | 3 cut(s) | 408, 1154, 1815 |
| BmrFI | CCNGG | 3 cut(s) | 1298, 1661, 1934 |
| BmrI | ACTGGG | 3 cut(s) | 250, 742, 1971 |
| BmsI | GCATC | 5 cut(s) | 1005, 1063, 1480, 1540, 1834 |
| BmuI | ACTGGG | 3 cut(s) | 250, 742, 1971 |
| BpiI | GAAGAC | 1 cut(s) | 1778 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1772, 1804 |
| BpmI | CTGGAG | 1 cut(s) | 1439 |
| Bpu10I | CCTNAGC | 1 cut(s) | 936 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1136 |
| BpuEI | CTTGAG | 2 cut(s) | 1028, 1220 |
| BpuMI | CCSGG | 1 cut(s) | 1661 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1733 |
| BsaHI | GRCGYC | 1 cut(s) | 1713 |
| BsaI | GGTCTC | 1 cut(s) | 1698 |
| BsaJI | CCNNGG | 5 cut(s) | 333, 787, 984, 1296, 1660 |
| BsaWI | WCCGGW | 1 cut(s) | 346 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 139, 169, 1529, 1559 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 166, 240, 338, 560, 667, 1983 |
| Bse1I | ACTGG | 6 cut(s) | 245, 737, 1422, 1826, 1899, 1977 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1733 |
| BseBI | CCWGG | 2 cut(s) | 1298, 1934 |
| BseDI | CCNNGG | 5 cut(s) | 333, 787, 984, 1296, 1660 |
| BseGI | GGATG | 8 cut(s) | 673, 845, 859, 1078, 1477, 1495, 1771, 1825 |
| BseJI | GATNNNNATC | 1 cut(s) | 1733 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 166, 240, 338, 560, 667, 1983 |
| BseMII | CTCAG | 3 cut(s) | 576, 927, 1150 |
| BseNI | ACTGG | 6 cut(s) | 245, 737, 1422, 1826, 1899, 1977 |
| BseRI | GAGGAG | 3 cut(s) | 1025, 1267, 1544 |
| BseSI | GKGCMC | 1 cut(s) | 1237 |
| BsgI | GTGCAG | 4 cut(s) | 396, 426, 456, 1631 |
| BshFI | GGCC | 4 cut(s) | 316, 376, 553, 2030 |
| BsiHKCI | CYCGRG | 1 cut(s) | 849 |
| BsiSI | CCGG | 2 cut(s) | 347, 1660 |
| BslFI | GGGAC | 2 cut(s) | 812, 1166 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 166, 240, 338, 560, 667, 1983 |
| BsmAI | GTCTC | 3 cut(s) | 9, 1698, 1793 |
| BsmFI | GGGAC | 2 cut(s) | 812, 1166 |
| BsmI | GAATGC | 1 cut(s) | 1288 |
| BsnI | GGCC | 4 cut(s) | 316, 376, 553, 2030 |
| Bso31I | GGTCTC | 1 cut(s) | 1698 |
| BsoBI | CYCGRG | 1 cut(s) | 849 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1237 |
| Bsp143I | GATC | 6 cut(s) | 11, 826, 1512, 1813, 1836, 1953 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1136 |
| BspACI | CCGC | 6 cut(s) | 476, 895, 1167, 1591, 1763, 1811 |
| BspANI | GGCC | 4 cut(s) | 316, 376, 553, 2030 |
| BspCNI | CTCAG | 3 cut(s) | 577, 928, 1149 |
| BspHI | TCATGA | 1 cut(s) | 1267 |
| BspLI | GGNNCC | 3 cut(s) | 408, 1154, 1815 |
| BspMAI | CTGCAG | 3 cut(s) | 301, 361, 2079 |
| BspMI | ACCTGC | 4 cut(s) | 394, 418, 1889, 1974 |
| BspPI | GGATC | 2 cut(s) | 1808, 1821 |
| BspQI | GCTCTTC | 1 cut(s) | 1335 |
| BspTNI | GGTCTC | 1 cut(s) | 1698 |
| BsrBI | CCGCTC | 1 cut(s) | 1591 |
| BsrI | ACTGG | 6 cut(s) | 245, 737, 1422, 1826, 1899, 1977 |
| BssECI | CCNNGG | 5 cut(s) | 333, 787, 984, 1296, 1660 |
| BssMI | GATC | 6 cut(s) | 11, 826, 1512, 1813, 1836, 1953 |
| BssNI | GRCGYC | 1 cut(s) | 1713 |
| BssT1I | CCWWGG | 3 cut(s) | 333, 787, 984 |
| Bst2UI | CCWGG | 2 cut(s) | 1298, 1934 |
| Bst4CI | ACNGT | 2 cut(s) | 919, 1332 |
| Bst6I | CTCTTC | 4 cut(s) | 245, 275, 1335, 1688 |
| BstACI | GRCGYC | 1 cut(s) | 1713 |
| BstC8I | GCNNGC | 5 cut(s) | 391, 441, 471, 933, 1621 |
| BstDEI | CTNAG | 4 cut(s) | 164, 585, 936, 1136 |
| BstF5I | GGATG | 8 cut(s) | 673, 845, 859, 1078, 1477, 1495, 1771, 1825 |
| BstH2I | RGCGCY | 2 cut(s) | 787, 1577 |
| BstHHI | GCGC | 2 cut(s) | 786, 1576 |
| BstKTI | GATC | 6 cut(s) | 14, 829, 1515, 1816, 1839, 1956 |
| BstMAI | GTCTC | 3 cut(s) | 9, 1698, 1793 |
| BstMBI | GATC | 6 cut(s) | 11, 826, 1512, 1813, 1836, 1953 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 210, 373, 475, 1559 |
| BstNI | CCWGG | 2 cut(s) | 1298, 1934 |
| BstNSI | RCATGY | 2 cut(s) | 185, 608 |
| BstSCI | CCNGG | 3 cut(s) | 1296, 1659, 1932 |
| BstSFI | CTRYAG | 6 cut(s) | 297, 357, 432, 492, 1554, 2075 |
| BstSLI | GKGCMC | 1 cut(s) | 1237 |
| BstV2I | GAAGAC | 1 cut(s) | 1778 |
| BstX2I | RGATCY | 1 cut(s) | 1813 |
| BstYI | RGATCY | 1 cut(s) | 1813 |
| BsuI | GTATCC | 1 cut(s) | 976 |
| BsuRI | GGCC | 4 cut(s) | 316, 376, 553, 2030 |
| BtsCI | GGATG | 8 cut(s) | 673, 845, 859, 1078, 1477, 1495, 1771, 1825 |
| BtsI | GCAGTG | 2 cut(s) | 1944, 2072 |
| BtsIMutI | CAGTG | 5 cut(s) | 238, 1415, 1944, 1984, 2072 |
| BveI | ACCTGC | 4 cut(s) | 394, 418, 1889, 1974 |
| Cac8I | GCNNGC | 5 cut(s) | 391, 441, 471, 933, 1621 |
| CciI | TCATGA | 1 cut(s) | 1267 |
| CfoI | GCGC | 2 cut(s) | 786, 1576 |
| Cfr13I | GGNCC | 3 cut(s) | 344, 374, 1153 |
| Csp6I | GTAC | 1 cut(s) | 49 |
| CviAII | CATG | 7 cut(s) | 137, 182, 605, 1157, 1268, 1468, 1486 |
| CviQI | GTAC | 1 cut(s) | 49 |
| DdeI | CTNAG | 4 cut(s) | 164, 585, 936, 1136 |
| DpnI | GATC | 6 cut(s) | 13, 828, 1514, 1815, 1838, 1955 |
| DpnII | GATC | 6 cut(s) | 11, 826, 1512, 1813, 1836, 1953 |
| DraI | TTTAAA | 1 cut(s) | 1452 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1712 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1712 |
| Eam1104I | CTCTTC | 4 cut(s) | 245, 275, 1335, 1688 |
| EarI | CTCTTC | 4 cut(s) | 245, 275, 1335, 1688 |
| Eco130I | CCWWGG | 3 cut(s) | 333, 787, 984 |
| Eco31I | GGTCTC | 1 cut(s) | 1698 |
| Eco47I | GGWCC | 2 cut(s) | 344, 1153 |
| Eco47III | AGCGCT | 1 cut(s) | 1575 |
| Eco57I | CTGAAG | 1 cut(s) | 2081 |
| Eco88I | CYCGRG | 1 cut(s) | 849 |
| EcoO109I | RGGNCCY | 1 cut(s) | 374 |
| EcoRI | GAATTC | 1 cut(s) | 997 |
| EcoRII | CCWGG | 2 cut(s) | 1296, 1932 |
| EcoT14I | CCWWGG | 3 cut(s) | 333, 787, 984 |
| ErhI | CCWWGG | 3 cut(s) | 333, 787, 984 |
| FaeI | CATG | 7 cut(s) | 140, 185, 608, 1160, 1271, 1471, 1489 |
| FaqI | GGGAC | 2 cut(s) | 812, 1166 |
| FatI | CATG | 7 cut(s) | 136, 181, 604, 1156, 1267, 1467, 1485 |
| Fnu4HI | GCNGC | 1 cut(s) | 1167 |
| FokI | GGATG | 8 cut(s) | 660, 852, 866, 1085, 1484, 1502, 1778, 1812 |
| Fsp4HI | GCNGC | 1 cut(s) | 1167 |
| FspBI | CTAG | 4 cut(s) | 318, 368, 378, 1631 |
| GlaI | GCGC | 2 cut(s) | 785, 1575 |
| GluI | GCNGC | 1 cut(s) | 1167 |
| GsuI | CTGGAG | 1 cut(s) | 1439 |
| HaeII | RGCGCY | 2 cut(s) | 787, 1577 |
| HaeIII | GGCC | 4 cut(s) | 316, 376, 553, 2030 |
| HapII | CCGG | 2 cut(s) | 347, 1660 |
| HhaI | GCGC | 2 cut(s) | 786, 1576 |
| Hin1I | GRCGYC | 1 cut(s) | 1713 |
| Hin1II | CATG | 7 cut(s) | 140, 185, 608, 1160, 1271, 1471, 1489 |
| Hin6I | GCGC | 2 cut(s) | 784, 1574 |
| HinP1I | GCGC | 2 cut(s) | 784, 1574 |
| HincII | GTYRAC | 2 cut(s) | 642, 1636 |
| HindII | GTYRAC | 2 cut(s) | 642, 1636 |
| HindIII | AAGCTT | 2 cut(s) | 959, 1086 |
| HinfI | GANTC | 8 cut(s) | 110, 283, 293, 485, 497, 515, 1649, 2094 |
| HpaII | CCGG | 2 cut(s) | 347, 1660 |
| HphI | GGTGA | 1 cut(s) | 1931 |
| Hpy166II | GTNNAC | 2 cut(s) | 642, 1636 |
| Hpy188I | TCNGA | 9 cut(s) | 40, 109, 422, 810, 1718, 1728, 2037, 2061, 2088 |
| Hpy188III | TCNNGA | 7 cut(s) | 177, 851, 870, 1007, 1268, 1738, 1834 |
| Hpy8I | GTNNAC | 2 cut(s) | 642, 1636 |
| HpyAV | CCTTC | 6 cut(s) | 365, 731, 1528, 1847, 2020, 2074 |
| HpyCH4III | ACNGT | 2 cut(s) | 919, 1332 |
| HpyCH4IV | ACGT | 1 cut(s) | 1713 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 210, 373, 475, 1559 |
| HpyF3I | CTNAG | 4 cut(s) | 164, 585, 936, 1136 |
| HpySE526I | ACGT | 1 cut(s) | 1713 |
| Hsp92I | GRCGYC | 1 cut(s) | 1713 |
| Hsp92II | CATG | 7 cut(s) | 140, 185, 608, 1160, 1271, 1471, 1489 |
| HspAI | GCGC | 2 cut(s) | 784, 1574 |
| Kzo9I | GATC | 6 cut(s) | 11, 826, 1512, 1813, 1836, 1953 |
| LguI | GCTCTTC | 1 cut(s) | 1335 |
| LmnI | GCTCC | 7 cut(s) | 169, 1396, 1420, 1537, 1588, 1627, 2045 |
| LweI | GCATC | 5 cut(s) | 1005, 1063, 1480, 1540, 1834 |
| MaeI | CTAG | 4 cut(s) | 318, 368, 378, 1631 |
| MaeII | ACGT | 1 cut(s) | 1713 |
| MaeIII | GTNAC | 5 cut(s) | 89, 155, 695, 1326, 1942 |
| MalI | GATC | 6 cut(s) | 13, 828, 1514, 1815, 1838, 1955 |
| MbiI | CCGCTC | 1 cut(s) | 1591 |
| MboI | GATC | 6 cut(s) | 11, 826, 1512, 1813, 1836, 1953 |
| MfeI | CAATTG | 2 cut(s) | 711, 1385 |
| MflI | RGATCY | 1 cut(s) | 1813 |
| MhlI | GDGCHC | 1 cut(s) | 1237 |
| MlyI | GAGTC | 1 cut(s) | 292 |
| MmeI | TCCRAC | 2 cut(s) | 1158, 2066 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1563 |
| MseI | TTAA | 9 cut(s) | 77, 579, 657, 780, 975, 1049, 1083, 1451, 1863 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1470 |
| MspI | CCGG | 2 cut(s) | 347, 1660 |
| MspR9I | CCNGG | 3 cut(s) | 1298, 1661, 1934 |
| MunI | CAATTG | 2 cut(s) | 711, 1385 |
| Mva1269I | GAATGC | 1 cut(s) | 1288 |
| MvaI | CCWGG | 2 cut(s) | 1298, 1934 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 210, 373, 475, 1559 |
| NciI | CCSGG | 1 cut(s) | 1661 |
| NdeII | GATC | 6 cut(s) | 11, 826, 1512, 1813, 1836, 1953 |
| NlaIII | CATG | 7 cut(s) | 140, 185, 608, 1160, 1271, 1471, 1489 |
| NlaIV | GGNNCC | 3 cut(s) | 408, 1154, 1815 |
| NmeAIII | GCCGAG | 1 cut(s) | 661 |
| NmuCI | GTSAC | 2 cut(s) | 695, 1942 |
| NspI | RCATGY | 2 cut(s) | 185, 608 |
| PagI | TCATGA | 1 cut(s) | 1267 |
| PciI | ACATGT | 1 cut(s) | 604 |
| PciSI | GCTCTTC | 1 cut(s) | 1335 |
| PctI | GAATGC | 1 cut(s) | 1288 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1563 |
| PfeI | GAWTC | 7 cut(s) | 110, 293, 485, 497, 515, 1649, 2094 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 240 |
| PkrI | GCNGC | 1 cut(s) | 1168 |
| PleI | GAGTC | 1 cut(s) | 291 |
| PpsI | GAGTC | 1 cut(s) | 291 |
| PscI | ACATGT | 1 cut(s) | 604 |
| PsiI | TTATAA | 1 cut(s) | 69 |
| Psp6I | CCWGG | 2 cut(s) | 1296, 1932 |
| PspGI | CCWGG | 2 cut(s) | 1296, 1932 |
| PspN4I | GGNNCC | 3 cut(s) | 408, 1154, 1815 |
| PspPI | GGNCC | 3 cut(s) | 344, 374, 1153 |
| PstI | CTGCAG | 3 cut(s) | 301, 361, 2079 |
| PsuI | RGATCY | 1 cut(s) | 1813 |
| RsaI | GTAC | 1 cut(s) | 50 |
| RsaNI | GTAC | 1 cut(s) | 49 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1470 |
| SapI | GCTCTTC | 1 cut(s) | 1335 |
| SaqAI | TTAA | 9 cut(s) | 77, 579, 657, 780, 975, 1049, 1083, 1451, 1863 |
| SatI | GCNGC | 1 cut(s) | 1167 |
| Sau3AI | GATC | 6 cut(s) | 11, 826, 1512, 1813, 1836, 1953 |
| Sau96I | GGNCC | 3 cut(s) | 344, 374, 1153 |
| ScaI | AGTACT | 1 cut(s) | 50 |
| SchI | GAGTC | 1 cut(s) | 292 |
| ScrFI | CCNGG | 3 cut(s) | 1298, 1661, 1934 |
| SduI | GDGCHC | 1 cut(s) | 1237 |
| SfaNI | GCATC | 5 cut(s) | 1005, 1063, 1480, 1540, 1834 |
| SfcI | CTRYAG | 6 cut(s) | 297, 357, 432, 492, 1554, 2075 |
| SinI | GGWCC | 2 cut(s) | 344, 1153 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1470 |
| SmlI | CTYRAG | 2 cut(s) | 1007, 1199 |
| SmoI | CTYRAG | 2 cut(s) | 1007, 1199 |
| SsiI | CCGC | 6 cut(s) | 476, 895, 1167, 1591, 1763, 1811 |
| SspI | AATATT | 1 cut(s) | 1146 |
| SspMI | CTAG | 4 cut(s) | 318, 368, 378, 1631 |
| StyD4I | CCNGG | 3 cut(s) | 1296, 1659, 1932 |
| StyI | CCWWGG | 3 cut(s) | 333, 787, 984 |
| TaaI | ACNGT | 2 cut(s) | 919, 1332 |
| TaiI | ACGT | 1 cut(s) | 1716 |
| TaqI | TCGA | 1 cut(s) | 1956 |
| TatI | WGTACW | 1 cut(s) | 48 |
| TauI | GCSGC | 1 cut(s) | 1169 |
| TfiI | GAWTC | 7 cut(s) | 110, 293, 485, 497, 515, 1649, 2094 |
| Tru1I | TTAA | 9 cut(s) | 77, 579, 657, 780, 975, 1049, 1083, 1451, 1863 |
| Tru9I | TTAA | 9 cut(s) | 77, 579, 657, 780, 975, 1049, 1083, 1451, 1863 |
| TscAI | CASTG | 5 cut(s) | 245, 1422, 1951, 1984, 2072 |
| TseFI | GTSAC | 2 cut(s) | 695, 1942 |
| Tsp45I | GTSAC | 2 cut(s) | 695, 1942 |
| TspGWI | ACGGA | 4 cut(s) | 117, 666, 1653, 2035 |
| TspRI | CASTG | 5 cut(s) | 245, 1422, 1951, 1984, 2072 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 240 |
| VpaK11BI | GGWCC | 2 cut(s) | 344, 1153 |
| XapI | RAATTY | 4 cut(s) | 103, 685, 719, 997 |
| XceI | RCATGY | 2 cut(s) | 185, 608 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1563 |
| XspI | CTAG | 4 cut(s) | 318, 368, 378, 1631 |
| ZraI | GACGTC | 1 cut(s) | 1714 |
| ZrmI | AGTACT | 1 cut(s) | 50 |