Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 262 - 331 | 2.2e-12 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 327 |
| AciI | CCGC | 3 cut(s) | 6, 527, 647 |
| AclWI | GGATC | 2 cut(s) | 51, 776 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 438, 633 |
| AfaI | GTAC | 2 cut(s) | 707, 993 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 852 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 357, 389 |
| Alw21I | GWGCWC | 2 cut(s) | 1072, 1195 |
| AlwI | GGATC | 2 cut(s) | 51, 776 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 4 cut(s) | 106, 1001, 1102, 1204 |
| ApoI | RAATTY | 2 cut(s) | 438, 633 |
| AseI | ATTAAT | 1 cut(s) | 293 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 492 |
| AspLEI | GCGC | 1 cut(s) | 804 |
| AsuC2I | CCSGG | 1 cut(s) | 618 |
| AsuHPI | GGTGA | 4 cut(s) | 9, 764, 791, 923 |
| AsuNHI | GCTAGC | 1 cut(s) | 730 |
| BanII | GRGCYC | 2 cut(s) | 1072, 1195 |
| BbsI | GAAGAC | 1 cut(s) | 583 |
| Bbv12I | GWGCWC | 2 cut(s) | 1072, 1195 |
| BbvI | GCAGC | 4 cut(s) | 93, 988, 1089, 1191 |
| BccI | CCATC | 3 cut(s) | 73, 279, 452 |
| BclI | TGATCA | 1 cut(s) | 57 |
| BcnI | CCSGG | 1 cut(s) | 618 |
| BfaI | CTAG | 5 cut(s) | 263, 281, 731, 735, 917 |
| BfmI | CTRYAG | 1 cut(s) | 133 |
| BisI | GCNGC | 6 cut(s) | 6, 107, 527, 1002, 1103, 1205 |
| BlpI | GCTNAGC | 2 cut(s) | 208, 650 |
| BlsI | GCNGC | 6 cut(s) | 7, 108, 528, 1003, 1104, 1206 |
| Bme1390I | CCNGG | 1 cut(s) | 618 |
| BmrFI | CCNGG | 1 cut(s) | 618 |
| BmsI | GCATC | 2 cut(s) | 1047, 1216 |
| BmtI | GCTAGC | 1 cut(s) | 734 |
| BpiI | GAAGAC | 1 cut(s) | 583 |
| Bpu10I | CCTNAGC | 1 cut(s) | 321 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 208, 650 |
| BpuMI | CCSGG | 1 cut(s) | 618 |
| BsaJI | CCNNGG | 2 cut(s) | 9, 1186 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 805, 835, 844, 874 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 852 |
| Bse3DI | GCAATG | 2 cut(s) | 273, 315 |
| BseDI | CCNNGG | 2 cut(s) | 9, 1186 |
| BseGI | GGATG | 3 cut(s) | 290, 463, 1062 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 852 |
| BseMI | GCAATG | 2 cut(s) | 273, 315 |
| BseMII | CTCAG | 2 cut(s) | 222, 545 |
| BseXI | GCAGC | 4 cut(s) | 93, 988, 1089, 1191 |
| BsgI | GTGCAG | 2 cut(s) | 987, 1104 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1072, 1195 |
| BsiSI | CCGG | 1 cut(s) | 617 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 852 |
| BsmI | GAATGC | 1 cut(s) | 642 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1072, 1195 |
| Bsp143I | GATC | 7 cut(s) | 36, 43, 50, 57, 670, 781, 913 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 208, 650 |
| BspACI | CCGC | 3 cut(s) | 6, 527, 647 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 2 cut(s) | 221, 544 |
| BspOI | GCTAGC | 1 cut(s) | 734 |
| BspPI | GGATC | 2 cut(s) | 51, 776 |
| BsrDI | GCAATG | 2 cut(s) | 273, 315 |
| BssECI | CCNNGG | 2 cut(s) | 9, 1186 |
| BssMI | GATC | 7 cut(s) | 36, 43, 50, 57, 670, 781, 913 |
| BssNAI | GTATAC | 1 cut(s) | 328 |
| BssT1I | CCWWGG | 1 cut(s) | 1186 |
| Bst1107I | GTATAC | 1 cut(s) | 328 |
| Bst4CI | ACNGT | 4 cut(s) | 134, 701, 1042, 1247 |
| Bst6I | CTCTTC | 2 cut(s) | 136, 216 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 272 |
| BstC8I | GCNNGC | 5 cut(s) | 214, 273, 415, 419, 732 |
| BstDEI | CTNAG | 5 cut(s) | 208, 321, 514, 531, 650 |
| BstF5I | GGATG | 3 cut(s) | 290, 463, 1062 |
| BstHHI | GCGC | 1 cut(s) | 804 |
| BstKTI | GATC | 7 cut(s) | 39, 46, 53, 60, 673, 784, 916 |
| BstMBI | GATC | 7 cut(s) | 36, 43, 50, 57, 670, 781, 913 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 213, 272, 939 |
| BstNSI | RCATGY | 3 cut(s) | 504, 861, 1081 |
| BstSCI | CCNGG | 1 cut(s) | 616 |
| BstSFI | CTRYAG | 1 cut(s) | 133 |
| BstV1I | GCAGC | 4 cut(s) | 93, 988, 1089, 1191 |
| BstV2I | GAAGAC | 1 cut(s) | 583 |
| BstX2I | RGATCY | 1 cut(s) | 43 |
| BstYI | RGATCY | 1 cut(s) | 43 |
| BstZ17I | GTATAC | 1 cut(s) | 328 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgZI | GCGATG | 1 cut(s) | 923 |
| BtsCI | GGATG | 3 cut(s) | 290, 463, 1062 |
| BtsIMutI | CAGTG | 2 cut(s) | 53, 539 |
| Cac8I | GCNNGC | 5 cut(s) | 214, 273, 415, 419, 732 |
| CfoI | GCGC | 1 cut(s) | 804 |
| Csp6I | GTAC | 2 cut(s) | 706, 992 |
| CviAII | CATG | 7 cut(s) | 103, 501, 786, 858, 1078, 1200, 1217 |
| CviQI | GTAC | 2 cut(s) | 706, 992 |
| DdeI | CTNAG | 5 cut(s) | 208, 321, 514, 531, 650 |
| DpnI | GATC | 7 cut(s) | 38, 45, 52, 59, 672, 783, 915 |
| DpnII | GATC | 7 cut(s) | 36, 43, 50, 57, 670, 781, 913 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 2 cut(s) | 136, 216 |
| EarI | CTCTTC | 2 cut(s) | 136, 216 |
| Ecl136II | GAGCTC | 2 cut(s) | 1070, 1193 |
| Eco130I | CCWWGG | 1 cut(s) | 1186 |
| Eco24I | GRGCYC | 2 cut(s) | 1072, 1195 |
| Eco53kI | GAGCTC | 2 cut(s) | 1070, 1193 |
| EcoICRI | GAGCTC | 2 cut(s) | 1070, 1193 |
| EcoRI | GAATTC | 1 cut(s) | 438 |
| EcoT14I | CCWWGG | 1 cut(s) | 1186 |
| EcoT22I | ATGCAT | 1 cut(s) | 960 |
| EcoT38I | GRGCYC | 2 cut(s) | 1072, 1195 |
| ErhI | CCWWGG | 1 cut(s) | 1186 |
| FaeI | CATG | 7 cut(s) | 106, 504, 789, 861, 1081, 1203, 1220 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 357, 389 |
| FatI | CATG | 7 cut(s) | 102, 500, 785, 857, 1077, 1199, 1216 |
| FbaI | TGATCA | 1 cut(s) | 57 |
| FblI | GTMKAC | 1 cut(s) | 327 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 107, 527, 1002, 1103, 1205 |
| FokI | GGATG | 3 cut(s) | 297, 470, 1069 |
| FriOI | GRGCYC | 2 cut(s) | 1072, 1195 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 107, 527, 1002, 1103, 1205 |
| FspBI | CTAG | 5 cut(s) | 263, 281, 731, 735, 917 |
| GlaI | GCGC | 1 cut(s) | 803 |
| GluI | GCNGC | 6 cut(s) | 6, 107, 527, 1002, 1103, 1205 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 617 |
| HhaI | GCGC | 1 cut(s) | 804 |
| Hin1II | CATG | 7 cut(s) | 106, 504, 789, 861, 1081, 1203, 1220 |
| Hin6I | GCGC | 1 cut(s) | 802 |
| HinP1I | GCGC | 1 cut(s) | 802 |
| HindIII | AAGCTT | 1 cut(s) | 176 |
| HinfI | GANTC | 7 cut(s) | 146, 237, 244, 493, 660, 755, 1088 |
| HpaII | CCGG | 1 cut(s) | 617 |
| HphI | GGTGA | 4 cut(s) | 9, 764, 791, 923 |
| Hpy166II | GTNNAC | 1 cut(s) | 328 |
| Hpy188I | TCNGA | 2 cut(s) | 50, 1227 |
| Hpy188III | TCNNGA | 4 cut(s) | 34, 241, 664, 838 |
| Hpy8I | GTNNAC | 1 cut(s) | 328 |
| Hpy99I | CGWCG | 1 cut(s) | 73 |
| HpyAV | CCTTC | 1 cut(s) | 184 |
| HpyCH4III | ACNGT | 4 cut(s) | 134, 701, 1042, 1247 |
| HpyCH4V | TGCA | 9 cut(s) | 109, 413, 500, 789, 958, 1004, 1121, 1207, 1220 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 213, 272, 939 |
| HpyF3I | CTNAG | 5 cut(s) | 208, 321, 514, 531, 650 |
| Hsp92II | CATG | 7 cut(s) | 106, 504, 789, 861, 1081, 1203, 1220 |
| HspAI | GCGC | 1 cut(s) | 802 |
| Ksp22I | TGATCA | 1 cut(s) | 57 |
| Kzo9I | GATC | 7 cut(s) | 36, 43, 50, 57, 670, 781, 913 |
| LmnI | GCTCC | 2 cut(s) | 388, 1190 |
| Lsp1109I | GCAGC | 4 cut(s) | 93, 988, 1089, 1191 |
| LweI | GCATC | 2 cut(s) | 1047, 1216 |
| MaeI | CTAG | 5 cut(s) | 263, 281, 731, 735, 917 |
| MaeIII | GTNAC | 1 cut(s) | 480 |
| MalI | GATC | 7 cut(s) | 38, 45, 52, 59, 672, 783, 915 |
| MboI | GATC | 7 cut(s) | 36, 43, 50, 57, 670, 781, 913 |
| MboII | GAAGA | 6 cut(s) | 153, 233, 239, 588, 1141, 1265 |
| MfeI | CAATTG | 1 cut(s) | 774 |
| MflI | RGATCY | 1 cut(s) | 43 |
| MhlI | GDGCHC | 2 cut(s) | 1072, 1195 |
| MluCI | AATT | 8 cut(s) | 198, 438, 539, 604, 633, 774, 1160, 1211 |
| MlyI | GAGTC | 2 cut(s) | 669, 1082 |
| MmeI | TCCRAC | 3 cut(s) | 167, 662, 1001 |
| Mph1103I | ATGCAT | 1 cut(s) | 960 |
| MroXI | GAANNNNTTC | 1 cut(s) | 492 |
| MseI | TTAA | 6 cut(s) | 203, 293, 428, 596, 714, 879 |
| MslI | CAYNNNNRTG | 2 cut(s) | 70, 487 |
| MspA1I | CMGCKG | 1 cut(s) | 1001 |
| MspI | CCGG | 1 cut(s) | 617 |
| MspR9I | CCNGG | 1 cut(s) | 618 |
| MunI | CAATTG | 1 cut(s) | 774 |
| Mva1269I | GAATGC | 1 cut(s) | 642 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 213, 272, 939 |
| NciI | CCSGG | 1 cut(s) | 618 |
| NdeII | GATC | 7 cut(s) | 36, 43, 50, 57, 670, 781, 913 |
| NheI | GCTAGC | 1 cut(s) | 730 |
| NlaIII | CATG | 7 cut(s) | 106, 504, 789, 861, 1081, 1203, 1220 |
| NmuCI | GTSAC | 1 cut(s) | 480 |
| NsiI | ATGCAT | 1 cut(s) | 960 |
| NspI | RCATGY | 3 cut(s) | 504, 861, 1081 |
| PctI | GAATGC | 1 cut(s) | 642 |
| PdmI | GAANNNNTTC | 1 cut(s) | 492 |
| PfeI | GAWTC | 5 cut(s) | 146, 237, 244, 493, 755 |
| PflFI | GACNNNGTC | 1 cut(s) | 1181 |
| PkrI | GCNGC | 6 cut(s) | 7, 108, 528, 1003, 1104, 1206 |
| PleI | GAGTC | 2 cut(s) | 668, 1082 |
| PpsI | GAGTC | 2 cut(s) | 668, 1082 |
| PshBI | ATTAAT | 1 cut(s) | 293 |
| Psp124BI | GAGCTC | 2 cut(s) | 1072, 1195 |
| PsuI | RGATCY | 1 cut(s) | 43 |
| PsyI | GACNNNGTC | 1 cut(s) | 1181 |
| PvuII | CAGCTG | 1 cut(s) | 1001 |
| RsaI | GTAC | 2 cut(s) | 707, 993 |
| RsaNI | GTAC | 2 cut(s) | 706, 992 |
| RseI | CAYNNNNRTG | 2 cut(s) | 70, 487 |
| SacI | GAGCTC | 2 cut(s) | 1072, 1195 |
| SaqAI | TTAA | 6 cut(s) | 203, 293, 428, 596, 714, 879 |
| SatI | GCNGC | 6 cut(s) | 6, 107, 527, 1002, 1103, 1205 |
| Sau3AI | GATC | 7 cut(s) | 36, 43, 50, 57, 670, 781, 913 |
| SchI | GAGTC | 2 cut(s) | 669, 1082 |
| ScrFI | CCNGG | 1 cut(s) | 618 |
| SduI | GDGCHC | 2 cut(s) | 1072, 1195 |
| SfaNI | GCATC | 2 cut(s) | 1047, 1216 |
| SfcI | CTRYAG | 1 cut(s) | 133 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 70, 487 |
| Sse9I | AATT | 8 cut(s) | 198, 438, 539, 604, 633, 774, 1160, 1211 |
| SsiI | CCGC | 3 cut(s) | 6, 527, 647 |
| SspMI | CTAG | 5 cut(s) | 263, 281, 731, 735, 917 |
| SstI | GAGCTC | 2 cut(s) | 1072, 1195 |
| StyD4I | CCNGG | 1 cut(s) | 616 |
| StyI | CCWWGG | 1 cut(s) | 1186 |
| TaaI | ACNGT | 4 cut(s) | 134, 701, 1042, 1247 |
| TaqII | GACCGA | 1 cut(s) | 88 |
| TasI | AATT | 8 cut(s) | 198, 438, 539, 604, 633, 774, 1160, 1211 |
| TatI | WGTACW | 1 cut(s) | 705 |
| TauI | GCSGC | 2 cut(s) | 8, 529 |
| TfiI | GAWTC | 5 cut(s) | 146, 237, 244, 493, 755 |
| Tru1I | TTAA | 6 cut(s) | 203, 293, 428, 596, 714, 879 |
| Tru9I | TTAA | 6 cut(s) | 203, 293, 428, 596, 714, 879 |
| TscAI | CASTG | 2 cut(s) | 60, 539 |
| TseFI | GTSAC | 1 cut(s) | 480 |
| TseI | GCWGC | 4 cut(s) | 106, 1001, 1102, 1204 |
| Tsp45I | GTSAC | 1 cut(s) | 480 |
| TspDTI | ATGAA | 2 cut(s) | 747, 1205 |
| TspGWI | ACGGA | 1 cut(s) | 590 |
| TspRI | CASTG | 2 cut(s) | 60, 539 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1181 |
| VspI | ATTAAT | 1 cut(s) | 293 |
| XapI | RAATTY | 2 cut(s) | 438, 633 |
| XceI | RCATGY | 3 cut(s) | 504, 861, 1081 |
| XmiI | GTMKAC | 1 cut(s) | 327 |
| XmnI | GAANNNNTTC | 1 cut(s) | 492 |
| XspI | CTAG | 5 cut(s) | 263, 281, 731, 735, 917 |
| Zsp2I | ATGCAT | 1 cut(s) | 960 |