Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 247, 483 |
| AccB1I | GGYRCC | 2 cut(s) | 247, 483 |
| AclWI | GGATC | 1 cut(s) | 320 |
| AcoI | YGGCCR | 1 cut(s) | 27 |
| AcsI | RAATTY | 2 cut(s) | 61, 402 |
| AfaI | GTAC | 2 cut(s) | 249, 485 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 36 |
| AgsI | TTSAA | 4 cut(s) | 13, 185, 238, 307 |
| AjnI | CCWGG | 2 cut(s) | 133, 149 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 508, 540 |
| AluBI | AGCT | 3 cut(s) | 20, 89, 178 |
| AluI | AGCT | 3 cut(s) | 20, 89, 178 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 1 cut(s) | 320 |
| AoxI | GGCC | 3 cut(s) | 27, 254, 269 |
| ApoI | RAATTY | 2 cut(s) | 61, 402 |
| Asp718I | GGTACC | 2 cut(s) | 247, 483 |
| AspS9I | GGNCC | 1 cut(s) | 586 |
| AsuC2I | CCSGG | 1 cut(s) | 253 |
| AvaII | GGWCC | 1 cut(s) | 586 |
| BalI | TGGCCA | 1 cut(s) | 29 |
| BanI | GGYRCC | 2 cut(s) | 247, 483 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 467, 499 |
| BccI | CCATC | 1 cut(s) | 495 |
| BciT130I | CCWGG | 2 cut(s) | 135, 151 |
| BciVI | GTATCC | 1 cut(s) | 186 |
| BclI | TGATCA | 1 cut(s) | 451 |
| BcnI | CCSGG | 1 cut(s) | 253 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfuI | GTATCC | 1 cut(s) | 186 |
| Bme1390I | CCNGG | 3 cut(s) | 135, 151, 253 |
| Bme18I | GGWCC | 1 cut(s) | 586 |
| BmgT120I | GGNCC | 1 cut(s) | 586 |
| BmiI | GGNNCC | 3 cut(s) | 249, 485, 587 |
| BmrFI | CCNGG | 3 cut(s) | 135, 151, 253 |
| BmrI | ACTGGG | 1 cut(s) | 222 |
| BmuI | ACTGGG | 1 cut(s) | 222 |
| BpmI | CTGGAG | 1 cut(s) | 380 |
| BpuMI | CCSGG | 1 cut(s) | 253 |
| BsaJI | CCNNGG | 4 cut(s) | 133, 134, 242, 251 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 36 |
| Bse1I | ACTGG | 1 cut(s) | 217 |
| BseBI | CCWGG | 2 cut(s) | 135, 151 |
| BseDI | CCNNGG | 4 cut(s) | 133, 134, 242, 251 |
| BseGI | GGATG | 1 cut(s) | 351 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BseMII | CTCAG | 1 cut(s) | 424 |
| BseNI | ACTGG | 1 cut(s) | 217 |
| BseYI | CCCAGC | 1 cut(s) | 581 |
| BshFI | GGCC | 3 cut(s) | 29, 256, 271 |
| BshNI | GGYRCC | 2 cut(s) | 247, 483 |
| BsiSI | CCGG | 2 cut(s) | 253, 329 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsnI | GGCC | 3 cut(s) | 29, 256, 271 |
| Bsp143I | GATC | 2 cut(s) | 325, 451 |
| Bsp19I | CCATGG | 1 cut(s) | 242 |
| BspANI | GGCC | 3 cut(s) | 29, 256, 271 |
| BspCNI | CTCAG | 1 cut(s) | 423 |
| BspLI | GGNNCC | 3 cut(s) | 249, 485, 587 |
| BspPI | GGATC | 1 cut(s) | 320 |
| BspQI | GCTCTTC | 1 cut(s) | 27 |
| BspT107I | GGYRCC | 2 cut(s) | 247, 483 |
| BsrI | ACTGG | 1 cut(s) | 217 |
| BssECI | CCNNGG | 4 cut(s) | 133, 134, 242, 251 |
| BssMI | GATC | 2 cut(s) | 325, 451 |
| BssT1I | CCWWGG | 1 cut(s) | 242 |
| Bst2UI | CCWGG | 2 cut(s) | 135, 151 |
| Bst6I | CTCTTC | 2 cut(s) | 27, 470 |
| BstDEI | CTNAG | 2 cut(s) | 336, 410 |
| BstDSI | CCRYGG | 1 cut(s) | 242 |
| BstF5I | GGATG | 1 cut(s) | 351 |
| BstKTI | GATC | 2 cut(s) | 328, 454 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 2 cut(s) | 325, 451 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 26 |
| BstNI | CCWGG | 2 cut(s) | 135, 151 |
| BstNSI | RCATGY | 1 cut(s) | 122 |
| BstSCI | CCNGG | 3 cut(s) | 133, 149, 251 |
| BsuI | GTATCC | 1 cut(s) | 186 |
| BsuRI | GGCC | 3 cut(s) | 29, 256, 271 |
| BtgI | CCRYGG | 1 cut(s) | 242 |
| BtsCI | GGATG | 1 cut(s) | 351 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| Cfr13I | GGNCC | 1 cut(s) | 586 |
| Csp6I | GTAC | 2 cut(s) | 248, 484 |
| CviAII | CATG | 4 cut(s) | 119, 243, 458, 536 |
| CviJI | RGCY | 9 cut(s) | 8, 20, 29, 89, 178, 256, 271, 581, 605 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 20, 29, 89, 178, 256, 271, 581, 605 |
| CviQI | GTAC | 2 cut(s) | 248, 484 |
| DdeI | CTNAG | 2 cut(s) | 336, 410 |
| DpnI | GATC | 2 cut(s) | 327, 453 |
| DpnII | GATC | 2 cut(s) | 325, 451 |
| EaeI | YGGCCR | 1 cut(s) | 27 |
| Eam1104I | CTCTTC | 2 cut(s) | 27, 470 |
| EarI | CTCTTC | 2 cut(s) | 27, 470 |
| Eco130I | CCWWGG | 1 cut(s) | 242 |
| Eco147I | AGGCCT | 1 cut(s) | 271 |
| Eco47I | GGWCC | 1 cut(s) | 586 |
| EcoRII | CCWGG | 2 cut(s) | 133, 149 |
| EcoT14I | CCWWGG | 1 cut(s) | 242 |
| ErhI | CCWWGG | 1 cut(s) | 242 |
| FaeI | CATG | 4 cut(s) | 122, 246, 461, 539 |
| FaiI | YATR | 9 cut(s) | 120, 147, 244, 261, 287, 442, 459, 468, 537 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 165, 197 |
| FatI | CATG | 4 cut(s) | 118, 242, 457, 535 |
| FbaI | TGATCA | 1 cut(s) | 451 |
| FokI | GGATG | 1 cut(s) | 358 |
| GsaI | CCCAGC | 1 cut(s) | 585 |
| GsuI | CTGGAG | 1 cut(s) | 380 |
| HaeIII | GGCC | 3 cut(s) | 29, 256, 271 |
| HapII | CCGG | 2 cut(s) | 253, 329 |
| Hin1II | CATG | 4 cut(s) | 122, 246, 461, 539 |
| HinfI | GANTC | 2 cut(s) | 140, 462 |
| HpaII | CCGG | 2 cut(s) | 253, 329 |
| Hpy166II | GTNNAC | 2 cut(s) | 130, 589 |
| Hpy188I | TCNGA | 1 cut(s) | 109 |
| Hpy188III | TCNNGA | 2 cut(s) | 182, 359 |
| Hpy8I | GTNNAC | 2 cut(s) | 130, 589 |
| HpyAV | CCTTC | 2 cut(s) | 301, 571 |
| HpyCH4IV | ACGT | 1 cut(s) | 196 |
| HpyCH4V | TGCA | 1 cut(s) | 494 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 26 |
| HpyF3I | CTNAG | 2 cut(s) | 336, 410 |
| HpySE526I | ACGT | 1 cut(s) | 196 |
| Hsp92II | CATG | 4 cut(s) | 122, 246, 461, 539 |
| KpnI | GGTACC | 2 cut(s) | 251, 487 |
| Ksp22I | TGATCA | 1 cut(s) | 451 |
| Kzo9I | GATC | 2 cut(s) | 325, 451 |
| LguI | GCTCTTC | 1 cut(s) | 27 |
| MaeII | ACGT | 1 cut(s) | 196 |
| MaeIII | GTNAC | 1 cut(s) | 331 |
| MalI | GATC | 2 cut(s) | 327, 453 |
| MboI | GATC | 2 cut(s) | 325, 451 |
| MboII | GAAGA | 6 cut(s) | 14, 62, 311, 487, 519, 522 |
| MfeI | CAATTG | 1 cut(s) | 426 |
| MlsI | TGGCCA | 1 cut(s) | 29 |
| MluCI | AATT | 4 cut(s) | 61, 321, 402, 426 |
| MluNI | TGGCCA | 1 cut(s) | 29 |
| MmeI | TCCRAC | 1 cut(s) | 276 |
| MnlI | CCTC | 6 cut(s) | 267, 283, 355, 376, 417, 591 |
| Mox20I | TGGCCA | 1 cut(s) | 29 |
| MscI | TGGCCA | 1 cut(s) | 29 |
| MseI | TTAA | 3 cut(s) | 161, 320, 610 |
| MslI | CAYNNNNRTG | 1 cut(s) | 540 |
| Msp20I | TGGCCA | 1 cut(s) | 29 |
| MspI | CCGG | 2 cut(s) | 253, 329 |
| MspR9I | CCNGG | 3 cut(s) | 135, 151, 253 |
| MunI | CAATTG | 1 cut(s) | 426 |
| MvaI | CCWGG | 2 cut(s) | 135, 151 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 26 |
| NciI | CCSGG | 1 cut(s) | 253 |
| NcoI | CCATGG | 1 cut(s) | 242 |
| NdeII | GATC | 2 cut(s) | 325, 451 |
| NlaIII | CATG | 4 cut(s) | 122, 246, 461, 539 |
| NlaIV | GGNNCC | 3 cut(s) | 249, 485, 587 |
| NspI | RCATGY | 1 cut(s) | 122 |
| PasI | CCCWGGG | 1 cut(s) | 134 |
| PceI | AGGCCT | 1 cut(s) | 271 |
| PciSI | GCTCTTC | 1 cut(s) | 27 |
| PfeI | GAWTC | 2 cut(s) | 140, 462 |
| Psp6I | CCWGG | 2 cut(s) | 133, 149 |
| PspFI | CCCAGC | 1 cut(s) | 581 |
| PspGI | CCWGG | 2 cut(s) | 133, 149 |
| PspN4I | GGNNCC | 3 cut(s) | 249, 485, 587 |
| PspPI | GGNCC | 1 cut(s) | 586 |
| RsaI | GTAC | 2 cut(s) | 249, 485 |
| RsaNI | GTAC | 2 cut(s) | 248, 484 |
| RseI | CAYNNNNRTG | 1 cut(s) | 540 |
| SapI | GCTCTTC | 1 cut(s) | 27 |
| SaqAI | TTAA | 3 cut(s) | 161, 320, 610 |
| Sau3AI | GATC | 2 cut(s) | 325, 451 |
| Sau96I | GGNCC | 1 cut(s) | 586 |
| ScrFI | CCNGG | 3 cut(s) | 135, 151, 253 |
| SinI | GGWCC | 1 cut(s) | 586 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 540 |
| Sse9I | AATT | 4 cut(s) | 61, 321, 402, 426 |
| SseBI | AGGCCT | 1 cut(s) | 271 |
| SspI | AATATT | 1 cut(s) | 95 |
| StuI | AGGCCT | 1 cut(s) | 271 |
| StyD4I | CCNGG | 3 cut(s) | 133, 149, 251 |
| StyI | CCWWGG | 1 cut(s) | 242 |
| TaiI | ACGT | 1 cut(s) | 199 |
| TasI | AATT | 4 cut(s) | 61, 321, 402, 426 |
| TfiI | GAWTC | 2 cut(s) | 140, 462 |
| Tru1I | TTAA | 3 cut(s) | 161, 320, 610 |
| Tru9I | TTAA | 3 cut(s) | 161, 320, 610 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TspDTI | ATGAA | 3 cut(s) | 179, 561, 566 |
| TspRI | CASTG | 1 cut(s) | 217 |
| VpaK11BI | GGWCC | 1 cut(s) | 586 |
| XapI | RAATTY | 2 cut(s) | 61, 402 |
| XceI | RCATGY | 1 cut(s) | 122 |