ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 166 - 335 | 1.2e-08 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 475 |
| AccIII | TCCGGA | 1 cut(s) | 316 |
| AclI | AACGTT | 1 cut(s) | 346 |
| AcoI | YGGCCR | 1 cut(s) | 936 |
| AcsI | RAATTY | 3 cut(s) | 146, 453, 949 |
| AcuI | CTGAAG | 2 cut(s) | 426, 866 |
| AfaI | GTAC | 3 cut(s) | 157, 642, 942 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 559, 679, 680 |
| AgsI | TTSAA | 2 cut(s) | 452, 508 |
| AjnI | CCWGG | 2 cut(s) | 552, 585 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 7 cut(s) | 205, 410, 758, 767, 862, 1040, 1109 |
| AluI | AGCT | 7 cut(s) | 205, 410, 758, 767, 862, 1040, 1109 |
| Alw21I | GWGCWC | 2 cut(s) | 113, 769 |
| Alw26I | GTCTC | 2 cut(s) | 492, 704 |
| Alw44I | GTGCAC | 1 cut(s) | 109 |
| Aor13HI | TCCGGA | 1 cut(s) | 316 |
| AoxI | GGCC | 1 cut(s) | 936 |
| ApaLI | GTGCAC | 1 cut(s) | 109 |
| ApeKI | GCWGC | 3 cut(s) | 380, 859, 1106 |
| ApoI | RAATTY | 3 cut(s) | 146, 453, 949 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 1122 |
| AspA2I | CCTAGG | 1 cut(s) | 1000 |
| AspS9I | GGNCC | 2 cut(s) | 19, 314 |
| AsuC2I | CCSGG | 1 cut(s) | 312 |
| AsuHPI | GGTGA | 3 cut(s) | 88, 321, 991 |
| AvaII | GGWCC | 2 cut(s) | 19, 314 |
| AvrII | CCTAGG | 1 cut(s) | 1000 |
| AxyI | CCTNAGG | 1 cut(s) | 213 |
| BaeGI | GKGCMC | 1 cut(s) | 113 |
| BanII | GRGCYC | 1 cut(s) | 769 |
| BbsI | GAAGAC | 1 cut(s) | 1067 |
| Bbv12I | GWGCWC | 2 cut(s) | 113, 769 |
| BbvI | GCAGC | 3 cut(s) | 392, 871, 1118 |
| BccI | CCATC | 2 cut(s) | 553, 789 |
| BceAI | ACGGC | 2 cut(s) | 704, 923 |
| BciT130I | CCWGG | 2 cut(s) | 554, 587 |
| BclI | TGATCA | 1 cut(s) | 1125 |
| BcnI | CCSGG | 1 cut(s) | 312 |
| BcoDI | GTCTC | 2 cut(s) | 492, 704 |
| BfaI | CTAG | 2 cut(s) | 657, 1001 |
| BfmI | CTRYAG | 1 cut(s) | 378 |
| BisI | GCNGC | 3 cut(s) | 381, 860, 1107 |
| BlnI | CCTAGG | 1 cut(s) | 1000 |
| BlsI | GCNGC | 3 cut(s) | 382, 861, 1108 |
| Bme1390I | CCNGG | 3 cut(s) | 312, 554, 587 |
| Bme18I | GGWCC | 2 cut(s) | 19, 314 |
| BmgT120I | GGNCC | 2 cut(s) | 19, 314 |
| BmiI | GGNNCC | 2 cut(s) | 20, 551 |
| BmrFI | CCNGG | 3 cut(s) | 312, 554, 587 |
| BmsI | GCATC | 4 cut(s) | 282, 653, 850, 884 |
| BpiI | GAAGAC | 1 cut(s) | 1067 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 686, 718 |
| BpmI | CTGGAG | 1 cut(s) | 575 |
| BpuEI | CTTGAG | 1 cut(s) | 688 |
| BpuMI | CCSGG | 1 cut(s) | 312 |
| BsaI | GGTCTC | 2 cut(s) | 492, 704 |
| BsaJI | CCNNGG | 2 cut(s) | 1000, 1014 |
| BsaWI | WCCGGW | 2 cut(s) | 316, 878 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 559, 679, 680 |
| Bse21I | CCTNAGG | 1 cut(s) | 213 |
| Bse3DI | GCAATG | 1 cut(s) | 288 |
| BseAI | TCCGGA | 1 cut(s) | 316 |
| BseBI | CCWGG | 2 cut(s) | 554, 587 |
| BseDI | CCNNGG | 2 cut(s) | 1000, 1014 |
| BseGI | GGATG | 4 cut(s) | 121, 376, 668, 875 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 559, 679, 680 |
| BseMI | GCAATG | 1 cut(s) | 288 |
| BseMII | CTCAG | 2 cut(s) | 192, 227 |
| BseRI | GAGGAG | 3 cut(s) | 275, 495, 845 |
| BseSI | GKGCMC | 1 cut(s) | 113 |
| BseXI | GCAGC | 3 cut(s) | 392, 871, 1118 |
| BsgI | GTGCAG | 1 cut(s) | 1125 |
| BshFI | GGCC | 1 cut(s) | 938 |
| BsiHKAI | GWGCWC | 2 cut(s) | 113, 769 |
| BsiSI | CCGG | 3 cut(s) | 312, 317, 879 |
| BslFI | GGGAC | 1 cut(s) | 32 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 559, 679, 680 |
| BsmAI | GTCTC | 2 cut(s) | 492, 704 |
| BsmFI | GGGAC | 1 cut(s) | 32 |
| BsnI | GGCC | 1 cut(s) | 938 |
| Bso31I | GGTCTC | 2 cut(s) | 492, 704 |
| Bsp1286I | GDGCHC | 2 cut(s) | 113, 769 |
| Bsp13I | TCCGGA | 1 cut(s) | 316 |
| Bsp143I | GATC | 1 cut(s) | 1125 |
| BspANI | GGCC | 1 cut(s) | 938 |
| BspCNI | CTCAG | 2 cut(s) | 193, 226 |
| BspEI | TCCGGA | 1 cut(s) | 316 |
| BspHI | TCATGA | 2 cut(s) | 396, 813 |
| BspLI | GGNNCC | 2 cut(s) | 20, 551 |
| BspMAI | CTGCAG | 1 cut(s) | 382 |
| BspTNI | GGTCTC | 2 cut(s) | 492, 704 |
| BsrDI | GCAATG | 1 cut(s) | 288 |
| BssECI | CCNNGG | 2 cut(s) | 1000, 1014 |
| BssMI | GATC | 1 cut(s) | 1125 |
| BssT1I | CCWWGG | 1 cut(s) | 1000 |
| Bst2UI | CCWGG | 2 cut(s) | 554, 587 |
| Bst4CI | ACNGT | 2 cut(s) | 323, 625 |
| Bst6I | CTCTTC | 1 cut(s) | 791 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 389 |
| BstDEI | CTNAG | 3 cut(s) | 201, 213, 678 |
| BstF5I | GGATG | 4 cut(s) | 121, 376, 668, 875 |
| BstKTI | GATC | 1 cut(s) | 1128 |
| BstMAI | GTCTC | 2 cut(s) | 492, 704 |
| BstMBI | GATC | 1 cut(s) | 1125 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 389, 764 |
| BstNI | CCWGG | 2 cut(s) | 554, 587 |
| BstSCI | CCNGG | 3 cut(s) | 310, 552, 585 |
| BstSFI | CTRYAG | 1 cut(s) | 378 |
| BstSLI | GKGCMC | 1 cut(s) | 113 |
| BstV1I | GCAGC | 3 cut(s) | 392, 871, 1118 |
| BstV2I | GAAGAC | 1 cut(s) | 1067 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 928 |
| Bsu36I | CCTNAGG | 1 cut(s) | 213 |
| BsuRI | GGCC | 1 cut(s) | 938 |
| BtsCI | GGATG | 4 cut(s) | 121, 376, 668, 875 |
| CciI | TCATGA | 2 cut(s) | 396, 813 |
| Cfr13I | GGNCC | 2 cut(s) | 19, 314 |
| CpoI | CGGWCCG | 1 cut(s) | 314 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 3 cut(s) | 156, 641, 941 |
| CspI | CGGWCCG | 1 cut(s) | 314 |
| CviAII | CATG | 7 cut(s) | 397, 491, 565, 731, 743, 814, 989 |
| CviQI | GTAC | 3 cut(s) | 156, 641, 941 |
| DdeI | CTNAG | 3 cut(s) | 201, 213, 678 |
| DpnI | GATC | 1 cut(s) | 1127 |
| DpnII | GATC | 1 cut(s) | 1125 |
| DraI | TTTAAA | 1 cut(s) | 468 |
| EaeI | YGGCCR | 1 cut(s) | 936 |
| Eam1104I | CTCTTC | 1 cut(s) | 791 |
| EarI | CTCTTC | 1 cut(s) | 791 |
| Ecl136II | GAGCTC | 1 cut(s) | 767 |
| Eco130I | CCWWGG | 1 cut(s) | 1000 |
| Eco24I | GRGCYC | 1 cut(s) | 769 |
| Eco31I | GGTCTC | 2 cut(s) | 492, 704 |
| Eco47I | GGWCC | 2 cut(s) | 19, 314 |
| Eco53kI | GAGCTC | 1 cut(s) | 767 |
| Eco57I | CTGAAG | 2 cut(s) | 426, 866 |
| Eco81I | CCTNAGG | 1 cut(s) | 213 |
| EcoICRI | GAGCTC | 1 cut(s) | 767 |
| EcoO109I | RGGNCCY | 1 cut(s) | 19 |
| EcoRII | CCWGG | 2 cut(s) | 552, 585 |
| EcoT14I | CCWWGG | 1 cut(s) | 1000 |
| EcoT38I | GRGCYC | 1 cut(s) | 769 |
| ErhI | CCWWGG | 1 cut(s) | 1000 |
| FaeI | CATG | 7 cut(s) | 400, 494, 568, 734, 746, 817, 992 |
| FaqI | GGGAC | 1 cut(s) | 32 |
| FatI | CATG | 7 cut(s) | 396, 490, 564, 730, 742, 813, 988 |
| FbaI | TGATCA | 1 cut(s) | 1125 |
| FblI | GTMKAC | 1 cut(s) | 475 |
| Fnu4HI | GCNGC | 3 cut(s) | 381, 860, 1107 |
| FokI | GGATG | 4 cut(s) | 128, 383, 675, 862 |
| FriOI | GRGCYC | 1 cut(s) | 769 |
| Fsp4HI | GCNGC | 3 cut(s) | 381, 860, 1107 |
| FspBI | CTAG | 2 cut(s) | 657, 1001 |
| GluI | GCNGC | 3 cut(s) | 381, 860, 1107 |
| GsuI | CTGGAG | 1 cut(s) | 575 |
| HaeIII | GGCC | 1 cut(s) | 938 |
| HapII | CCGG | 3 cut(s) | 312, 317, 879 |
| HgaI | GACGC | 1 cut(s) | 128 |
| Hin1II | CATG | 7 cut(s) | 400, 494, 568, 734, 746, 817, 992 |
| HincII | GTYRAC | 2 cut(s) | 9, 476 |
| HindII | GTYRAC | 2 cut(s) | 9, 476 |
| HindIII | AAGCTT | 1 cut(s) | 1038 |
| HinfI | GANTC | 3 cut(s) | 70, 579, 800 |
| HpaII | CCGG | 3 cut(s) | 312, 317, 879 |
| HphI | GGTGA | 3 cut(s) | 88, 321, 991 |
| Hpy166II | GTNNAC | 4 cut(s) | 9, 111, 165, 476 |
| Hpy188I | TCNGA | 5 cut(s) | 202, 406, 414, 721, 846 |
| Hpy188III | TCNNGA | 5 cut(s) | 317, 397, 762, 814, 884 |
| Hpy8I | GTNNAC | 4 cut(s) | 9, 111, 165, 476 |
| Hpy99I | CGWCG | 2 cut(s) | 480, 800 |
| HpyAV | CCTTC | 7 cut(s) | 73, 677, 684, 780, 841, 1072, 1081 |
| HpyCH4III | ACNGT | 2 cut(s) | 323, 625 |
| HpyCH4IV | ACGT | 2 cut(s) | 158, 346 |
| HpyCH4V | TGCA | 8 cut(s) | 111, 295, 380, 503, 568, 859, 875, 1106 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 389, 764 |
| HpyF3I | CTNAG | 3 cut(s) | 201, 213, 678 |
| HpySE526I | ACGT | 2 cut(s) | 158, 346 |
| Hsp92II | CATG | 7 cut(s) | 400, 494, 568, 734, 746, 817, 992 |
| Kpn2I | TCCGGA | 1 cut(s) | 316 |
| Ksp22I | TGATCA | 1 cut(s) | 1125 |
| Kzo9I | GATC | 1 cut(s) | 1125 |
| LmnI | GCTCC | 1 cut(s) | 772 |
| Lsp1109I | GCAGC | 3 cut(s) | 392, 871, 1118 |
| LweI | GCATC | 4 cut(s) | 282, 653, 850, 884 |
| MaeI | CTAG | 2 cut(s) | 657, 1001 |
| MaeII | ACGT | 2 cut(s) | 158, 346 |
| MaeIII | GTNAC | 4 cut(s) | 220, 373, 738, 1022 |
| MalI | GATC | 1 cut(s) | 1127 |
| MboI | GATC | 1 cut(s) | 1125 |
| MboII | GAAGA | 5 cut(s) | 79, 145, 278, 778, 1072 |
| MhlI | GDGCHC | 2 cut(s) | 113, 769 |
| MluCI | AATT | 5 cut(s) | 146, 453, 509, 949, 1046 |
| MlyI | GAGTC | 1 cut(s) | 794 |
| MmeI | TCCRAC | 4 cut(s) | 203, 581, 699, 1064 |
| MroI | TCCGGA | 1 cut(s) | 316 |
| MseI | TTAA | 1 cut(s) | 467 |
| MslI | CAYNNNNRTG | 1 cut(s) | 45 |
| MspA1I | CMGCKG | 1 cut(s) | 1109 |
| MspI | CCGG | 3 cut(s) | 312, 317, 879 |
| MspR9I | CCNGG | 3 cut(s) | 312, 554, 587 |
| MvaI | CCWGG | 2 cut(s) | 554, 587 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 389, 764 |
| NciI | CCSGG | 1 cut(s) | 312 |
| NdeII | GATC | 1 cut(s) | 1125 |
| NlaIII | CATG | 7 cut(s) | 400, 494, 568, 734, 746, 817, 992 |
| NlaIV | GGNNCC | 2 cut(s) | 20, 551 |
| PagI | TCATGA | 2 cut(s) | 396, 813 |
| PfeI | GAWTC | 2 cut(s) | 70, 579 |
| PfoI | TCCNGGA | 1 cut(s) | 552 |
| PkrI | GCNGC | 3 cut(s) | 382, 861, 1108 |
| PleI | GAGTC | 1 cut(s) | 794 |
| PpsI | GAGTC | 1 cut(s) | 794 |
| PpuMI | RGGWCCY | 1 cut(s) | 19 |
| Psp124BI | GAGCTC | 1 cut(s) | 769 |
| Psp1406I | AACGTT | 1 cut(s) | 346 |
| Psp5II | RGGWCCY | 1 cut(s) | 19 |
| Psp6I | CCWGG | 2 cut(s) | 552, 585 |
| PspGI | CCWGG | 2 cut(s) | 552, 585 |
| PspN4I | GGNNCC | 2 cut(s) | 20, 551 |
| PspPI | GGNCC | 2 cut(s) | 19, 314 |
| PspPPI | RGGWCCY | 1 cut(s) | 19 |
| PstI | CTGCAG | 1 cut(s) | 382 |
| PvuII | CAGCTG | 1 cut(s) | 1109 |
| RsaI | GTAC | 3 cut(s) | 157, 642, 942 |
| RsaNI | GTAC | 3 cut(s) | 156, 641, 941 |
| RseI | CAYNNNNRTG | 1 cut(s) | 45 |
| Rsr2I | CGGWCCG | 1 cut(s) | 314 |
| RsrII | CGGWCCG | 1 cut(s) | 314 |
| SacI | GAGCTC | 1 cut(s) | 769 |
| SalI | GTCGAC | 1 cut(s) | 474 |
| SaqAI | TTAA | 1 cut(s) | 467 |
| SatI | GCNGC | 3 cut(s) | 381, 860, 1107 |
| Sau3AI | GATC | 1 cut(s) | 1125 |
| Sau96I | GGNCC | 2 cut(s) | 19, 314 |
| SchI | GAGTC | 1 cut(s) | 794 |
| ScrFI | CCNGG | 3 cut(s) | 312, 554, 587 |
| SduI | GDGCHC | 2 cut(s) | 113, 769 |
| SfaNI | GCATC | 4 cut(s) | 282, 653, 850, 884 |
| SfcI | CTRYAG | 1 cut(s) | 378 |
| SinI | GGWCC | 2 cut(s) | 19, 314 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 45 |
| SmlI | CTYRAG | 1 cut(s) | 703 |
| SmoI | CTYRAG | 1 cut(s) | 703 |
| Sse9I | AATT | 5 cut(s) | 146, 453, 509, 949, 1046 |
| SspMI | CTAG | 2 cut(s) | 657, 1001 |
| SstI | GAGCTC | 1 cut(s) | 769 |
| StyD4I | CCNGG | 3 cut(s) | 310, 552, 585 |
| StyI | CCWWGG | 1 cut(s) | 1000 |
| TaaI | ACNGT | 2 cut(s) | 323, 625 |
| TaiI | ACGT | 2 cut(s) | 161, 349 |
| TaqI | TCGA | 3 cut(s) | 31, 475, 761 |
| TasI | AATT | 5 cut(s) | 146, 453, 509, 949, 1046 |
| TatI | WGTACW | 1 cut(s) | 640 |
| TfiI | GAWTC | 2 cut(s) | 70, 579 |
| Tru1I | TTAA | 1 cut(s) | 467 |
| Tru9I | TTAA | 1 cut(s) | 467 |
| TseI | GCWGC | 3 cut(s) | 380, 859, 1106 |
| TspDTI | ATGAA | 8 cut(s) | 29, 248, 299, 385, 624, 802, 882, 1091 |
| TspGWI | ACGGA | 2 cut(s) | 128, 663 |
| VneI | GTGCAC | 1 cut(s) | 109 |
| VpaK11BI | GGWCC | 2 cut(s) | 19, 314 |
| XapI | RAATTY | 3 cut(s) | 146, 453, 949 |
| XmaJI | CCTAGG | 1 cut(s) | 1000 |
| XmiI | GTMKAC | 1 cut(s) | 475 |
| XspI | CTAG | 2 cut(s) | 657, 1001 |