ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RINT1_TIP1 | PF04437 | 293 - 791 | 5.6e-37 | RINT-1/TIP-1 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2081 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 11 |
| AatII | GACGTC | 1 cut(s) | 1731 |
| Acc36I | ACCTGC | 2 cut(s) | 1421, 2081 |
| AccI | GTMKAC | 2 cut(s) | 972, 2061 |
| AccII | CGCG | 3 cut(s) | 222, 829, 852 |
| AccIII | TCCGGA | 1 cut(s) | 81 |
| AciI | CCGC | 3 cut(s) | 23, 141, 286 |
| AclWI | GGATC | 7 cut(s) | 49, 159, 180, 193, 947, 1799, 2336 |
| AcoI | YGGCCR | 3 cut(s) | 618, 677, 2346 |
| AcsI | RAATTY | 6 cut(s) | 484, 953, 1586, 1887, 2047, 2283 |
| AcuI | CTGAAG | 4 cut(s) | 510, 531, 1470, 1644 |
| AcyI | GRCGYC | 2 cut(s) | 35, 1728 |
| AfaI | GTAC | 4 cut(s) | 770, 866, 1052, 1162 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 292, 571, 627, 675, 707, 1814 |
| AflIII | ACRYGT | 1 cut(s) | 537 |
| AgeI | ACCGGT | 1 cut(s) | 260 |
| AjnI | CCWGG | 5 cut(s) | 102, 129, 633, 983, 1768 |
| Alw21I | GWGCWC | 2 cut(s) | 129, 2008 |
| Alw26I | GTCTC | 8 cut(s) | 24, 217, 269, 383, 747, 1239, 2212, 2300 |
| AlwI | GGATC | 7 cut(s) | 49, 159, 180, 193, 947, 1799, 2336 |
| Ama87I | CYCGRG | 1 cut(s) | 2222 |
| Aor13HI | TCCGGA | 1 cut(s) | 81 |
| AoxI | GGCC | 5 cut(s) | 132, 618, 629, 677, 2346 |
| ApeKI | GCWGC | 5 cut(s) | 25, 288, 334, 795, 1685 |
| ApoI | RAATTY | 6 cut(s) | 484, 953, 1586, 1887, 2047, 2283 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1268, 1300 |
| AseI | ATTAAT | 1 cut(s) | 1680 |
| AsiGI | ACCGGT | 1 cut(s) | 260 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 780 |
| AspLEI | GCGC | 2 cut(s) | 224, 577 |
| AspS9I | GGNCC | 5 cut(s) | 13, 40, 133, 630, 1571 |
| AsuC2I | CCSGG | 1 cut(s) | 1048 |
| AsuHPI | GGTGA | 6 cut(s) | 385, 431, 892, 973, 1796, 1979 |
| AsuII | TTCGAA | 1 cut(s) | 1698 |
| AvaI | CYCGRG | 1 cut(s) | 2222 |
| AvaII | GGWCC | 3 cut(s) | 13, 40, 1571 |
| AxyI | CCTNAGG | 2 cut(s) | 30, 1607 |
| BaeGI | GKGCMC | 1 cut(s) | 658 |
| BalI | TGGCCA | 2 cut(s) | 620, 679 |
| BamHI | GGATCC | 1 cut(s) | 185 |
| BanII | GRGCYC | 2 cut(s) | 129, 616 |
| BbsI | GAAGAC | 1 cut(s) | 540 |
| Bbv12I | GWGCWC | 2 cut(s) | 129, 2008 |
| BbvI | GCAGC | 5 cut(s) | 12, 300, 321, 807, 1672 |
| BccI | CCATC | 5 cut(s) | 290, 669, 1142, 1787, 2144 |
| BceAI | ACGGC | 1 cut(s) | 244 |
| BciT130I | CCWGG | 5 cut(s) | 104, 131, 635, 985, 1770 |
| BciVI | GTATCC | 1 cut(s) | 1096 |
| BclI | TGATCA | 3 cut(s) | 88, 595, 1659 |
| BcnI | CCSGG | 1 cut(s) | 1048 |
| BcoDI | GTCTC | 8 cut(s) | 24, 217, 269, 383, 747, 1239, 2212, 2300 |
| BfaI | CTAG | 5 cut(s) | 197, 360, 1370, 1530, 2238 |
| BfmI | CTRYAG | 3 cut(s) | 639, 793, 800 |
| BfuAI | ACCTGC | 2 cut(s) | 1421, 2081 |
| BfuI | GTATCC | 1 cut(s) | 1096 |
| BisI | GCNGC | 6 cut(s) | 26, 142, 289, 335, 796, 1686 |
| BlsI | GCNGC | 6 cut(s) | 27, 143, 290, 336, 797, 1687 |
| BmcAI | AGTACT | 1 cut(s) | 770 |
| Bme1390I | CCNGG | 6 cut(s) | 104, 131, 635, 985, 1048, 1770 |
| Bme18I | GGWCC | 3 cut(s) | 13, 40, 1571 |
| BmeT110I | CYCGRG | 1 cut(s) | 2222 |
| BmgT120I | GGNCC | 5 cut(s) | 13, 40, 133, 630, 1571 |
| BmiI | GGNNCC | 5 cut(s) | 108, 179, 187, 632, 1572 |
| BmrFI | CCNGG | 6 cut(s) | 104, 131, 635, 985, 1048, 1770 |
| BmrI | ACTGGG | 2 cut(s) | 130, 1575 |
| BmsI | GCATC | 6 cut(s) | 421, 586, 923, 1481, 1642, 1906 |
| BmuI | ACTGGG | 2 cut(s) | 130, 1575 |
| BpiI | GAAGAC | 1 cut(s) | 540 |
| BpmI | CTGGAG | 3 cut(s) | 113, 684, 2322 |
| Bpu14I | TTCGAA | 1 cut(s) | 1698 |
| BpuEI | CTTGAG | 2 cut(s) | 256, 857 |
| BpuMI | CCSGG | 1 cut(s) | 1048 |
| Bsa29I | ATCGAT | 2 cut(s) | 246, 2104 |
| BsaBI | GATNNNNATC | 2 cut(s) | 93, 1495 |
| BsaHI | GRCGYC | 2 cut(s) | 35, 1728 |
| BsaI | GGTCTC | 3 cut(s) | 269, 747, 2212 |
| BsaJI | CCNNGG | 8 cut(s) | 181, 226, 633, 670, 984, 1423, 2223, 2349 |
| BsaWI | WCCGGW | 2 cut(s) | 81, 260 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 292, 571, 627, 675, 707, 1814 |
| Bse118I | RCCGGY | 2 cut(s) | 260, 337 |
| Bse1I | ACTGG | 9 cut(s) | 16, 136, 348, 766, 1334, 1396, 1476, 1570, 1808 |
| Bse21I | CCTNAGG | 2 cut(s) | 30, 1607 |
| Bse3DI | GCAATG | 3 cut(s) | 1044, 1523, 2140 |
| Bse8I | GATNNNNATC | 2 cut(s) | 93, 1495 |
| BseAI | TCCGGA | 1 cut(s) | 81 |
| BseBI | CCWGG | 5 cut(s) | 104, 131, 635, 985, 1770 |
| BseCI | ATCGAT | 2 cut(s) | 246, 2104 |
| BseDI | CCNNGG | 8 cut(s) | 181, 226, 633, 670, 984, 1423, 2223, 2349 |
| BseGI | GGATG | 6 cut(s) | 301, 680, 914, 1012, 1153, 2319 |
| BseJI | GATNNNNATC | 2 cut(s) | 93, 1495 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 292, 571, 627, 675, 707, 1814 |
| BseMI | GCAATG | 3 cut(s) | 1044, 1523, 2140 |
| BseMII | CTCAG | 4 cut(s) | 44, 112, 1178, 1570 |
| BseNI | ACTGG | 9 cut(s) | 16, 136, 348, 766, 1334, 1396, 1476, 1570, 1808 |
| BseRI | GAGGAG | 5 cut(s) | 107, 321, 344, 1874, 2169 |
| BseSI | GKGCMC | 1 cut(s) | 658 |
| BseXI | GCAGC | 5 cut(s) | 12, 300, 321, 807, 1672 |
| Bsh1236I | CGCG | 3 cut(s) | 222, 829, 852 |
| Bsh1285I | CGRYCG | 1 cut(s) | 220 |
| BshFI | GGCC | 5 cut(s) | 134, 620, 631, 679, 2348 |
| BshTI | ACCGGT | 1 cut(s) | 260 |
| BshVI | ATCGAT | 2 cut(s) | 246, 2104 |
| BsiEI | CGRYCG | 1 cut(s) | 220 |
| BsiHKAI | GWGCWC | 2 cut(s) | 129, 2008 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2222 |
| BsiSI | CCGG | 4 cut(s) | 82, 261, 338, 1047 |
| BslFI | GGGAC | 1 cut(s) | 1584 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 292, 571, 627, 675, 707, 1814 |
| BsmAI | GTCTC | 8 cut(s) | 24, 217, 269, 383, 747, 1239, 2212, 2300 |
| BsmBI | CGTCTC | 1 cut(s) | 217 |
| BsmFI | GGGAC | 1 cut(s) | 1584 |
| BsmI | GAATGC | 2 cut(s) | 469, 2059 |
| BsnI | GGCC | 5 cut(s) | 134, 620, 631, 679, 2348 |
| Bso31I | GGTCTC | 3 cut(s) | 269, 747, 2212 |
| BsoBI | CYCGRG | 1 cut(s) | 2222 |
| Bsp119I | TTCGAA | 1 cut(s) | 1698 |
| Bsp1286I | GDGCHC | 4 cut(s) | 129, 616, 658, 2008 |
| Bsp13I | TCCGGA | 1 cut(s) | 81 |
| Bsp68I | TCGCGA | 2 cut(s) | 829, 852 |
| BspACI | CCGC | 3 cut(s) | 23, 141, 286 |
| BspANI | GGCC | 5 cut(s) | 134, 620, 631, 679, 2348 |
| BspCNI | CTCAG | 4 cut(s) | 43, 111, 1177, 1569 |
| BspDI | ATCGAT | 2 cut(s) | 246, 2104 |
| BspEI | TCCGGA | 1 cut(s) | 81 |
| BspFNI | CGCG | 3 cut(s) | 222, 829, 852 |
| BspLI | GGNNCC | 5 cut(s) | 108, 179, 187, 632, 1572 |
| BspMAI | CTGCAG | 1 cut(s) | 797 |
| BspMI | ACCTGC | 2 cut(s) | 1421, 2081 |
| BspPI | GGATC | 7 cut(s) | 49, 159, 180, 193, 947, 1799, 2336 |
| BspQI | GCTCTTC | 1 cut(s) | 882 |
| BspT104I | TTCGAA | 1 cut(s) | 1698 |
| BspTNI | GGTCTC | 3 cut(s) | 269, 747, 2212 |
| BsrDI | GCAATG | 3 cut(s) | 1044, 1523, 2140 |
| BsrFI | RCCGGY | 2 cut(s) | 260, 337 |
| BsrI | ACTGG | 9 cut(s) | 16, 136, 348, 766, 1334, 1396, 1476, 1570, 1808 |
| BssAI | RCCGGY | 2 cut(s) | 260, 337 |
| BssECI | CCNNGG | 8 cut(s) | 181, 226, 633, 670, 984, 1423, 2223, 2349 |
| BssNI | GRCGYC | 2 cut(s) | 35, 1728 |
| BssT1I | CCWWGG | 2 cut(s) | 670, 1423 |
| Bst2UI | CCWGG | 5 cut(s) | 104, 131, 635, 985, 1770 |
| Bst4CI | ACNGT | 7 cut(s) | 773, 1055, 1280, 1414, 1953, 1976, 1984 |
| Bst6I | CTCTTC | 3 cut(s) | 882, 2271, 2363 |
| BstACI | GRCGYC | 2 cut(s) | 35, 1728 |
| BstBI | TTCGAA | 1 cut(s) | 1698 |
| BstC8I | GCNNGC | 2 cut(s) | 339, 1690 |
| BstDEI | CTNAG | 7 cut(s) | 30, 98, 626, 1164, 1556, 1607, 1989 |
| BstDSI | CCRYGG | 1 cut(s) | 226 |
| BstF5I | GGATG | 6 cut(s) | 301, 680, 914, 1012, 1153, 2319 |
| BstFNI | CGCG | 3 cut(s) | 222, 829, 852 |
| BstHHI | GCGC | 2 cut(s) | 224, 577 |
| BstMAI | GTCTC | 8 cut(s) | 24, 217, 269, 383, 747, 1239, 2212, 2300 |
| BstMCI | CGRYCG | 1 cut(s) | 220 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 228, 237, 288, 392, 2204 |
| BstNI | CCWGG | 5 cut(s) | 104, 131, 635, 985, 1770 |
| BstNSI | RCATGY | 1 cut(s) | 541 |
| BstSCI | CCNGG | 6 cut(s) | 102, 129, 633, 983, 1046, 1768 |
| BstSFI | CTRYAG | 3 cut(s) | 639, 793, 800 |
| BstSLI | GKGCMC | 1 cut(s) | 658 |
| BstUI | CGCG | 3 cut(s) | 222, 829, 852 |
| BstV1I | GCAGC | 5 cut(s) | 12, 300, 321, 807, 1672 |
| BstV2I | GAAGAC | 1 cut(s) | 540 |
| BstX2I | RGATCY | 2 cut(s) | 185, 1804 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 910 |
| BstYI | RGATCY | 2 cut(s) | 185, 1804 |
| Bsu15I | ATCGAT | 2 cut(s) | 246, 2104 |
| Bsu36I | CCTNAGG | 2 cut(s) | 30, 1607 |
| BsuI | GTATCC | 1 cut(s) | 1096 |
| BsuRI | GGCC | 5 cut(s) | 134, 620, 631, 679, 2348 |
| BsuTUI | ATCGAT | 2 cut(s) | 246, 2104 |
| BtgI | CCRYGG | 1 cut(s) | 226 |
| BtgZI | GCGATG | 1 cut(s) | 1410 |
| BtsCI | GGATG | 6 cut(s) | 301, 680, 914, 1012, 1153, 2319 |
| BtsIMutI | CAGTG | 5 cut(s) | 143, 341, 1419, 1483, 1958 |
| BtuMI | TCGCGA | 2 cut(s) | 829, 852 |
| BveI | ACCTGC | 2 cut(s) | 1421, 2081 |
| Cac8I | GCNNGC | 2 cut(s) | 339, 1690 |
| CfoI | GCGC | 2 cut(s) | 224, 577 |
| Cfr10I | RCCGGY | 2 cut(s) | 260, 337 |
| Cfr13I | GGNCC | 5 cut(s) | 13, 40, 133, 630, 1571 |
| ClaI | ATCGAT | 2 cut(s) | 246, 2104 |
| CseI | GACGC | 4 cut(s) | 24, 488, 568, 1454 |
| Csp6I | GTAC | 4 cut(s) | 769, 865, 1051, 1161 |
| CspAI | ACCGGT | 1 cut(s) | 260 |
| CviAII | CATG | 5 cut(s) | 448, 462, 538, 2310, 2344 |
| CviQI | GTAC | 4 cut(s) | 769, 865, 1051, 1161 |
| DdeI | CTNAG | 7 cut(s) | 30, 98, 626, 1164, 1556, 1607, 1989 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 11 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 11 |
| EaeI | YGGCCR | 3 cut(s) | 618, 677, 2346 |
| Eam1104I | CTCTTC | 3 cut(s) | 882, 2271, 2363 |
| EarI | CTCTTC | 3 cut(s) | 882, 2271, 2363 |
| Ecl136II | GAGCTC | 1 cut(s) | 127 |
| Eco130I | CCWWGG | 2 cut(s) | 670, 1423 |
| Eco24I | GRGCYC | 2 cut(s) | 129, 616 |
| Eco31I | GGTCTC | 3 cut(s) | 269, 747, 2212 |
| Eco32I | GATATC | 1 cut(s) | 1212 |
| Eco47I | GGWCC | 3 cut(s) | 13, 40, 1571 |
| Eco53kI | GAGCTC | 1 cut(s) | 127 |
| Eco57I | CTGAAG | 4 cut(s) | 510, 531, 1470, 1644 |
| Eco81I | CCTNAGG | 2 cut(s) | 30, 1607 |
| Eco88I | CYCGRG | 1 cut(s) | 2222 |
| EcoICRI | GAGCTC | 1 cut(s) | 127 |
| EcoO109I | RGGNCCY | 2 cut(s) | 630, 1571 |
| EcoRI | GAATTC | 1 cut(s) | 484 |
| EcoRII | CCWGG | 5 cut(s) | 102, 129, 633, 983, 1768 |
| EcoRV | GATATC | 1 cut(s) | 1212 |
| EcoT14I | CCWWGG | 2 cut(s) | 670, 1423 |
| EcoT38I | GRGCYC | 2 cut(s) | 129, 616 |
| ErhI | CCWWGG | 2 cut(s) | 670, 1423 |
| Esp3I | CGTCTC | 1 cut(s) | 217 |
| FaeI | CATG | 5 cut(s) | 451, 465, 541, 2313, 2347 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 458, 490, 741, 773 |
| FaqI | GGGAC | 1 cut(s) | 1584 |
| FatI | CATG | 5 cut(s) | 447, 461, 537, 2309, 2343 |
| FauI | CCCGC | 1 cut(s) | 293 |
| FauNDI | CATATG | 1 cut(s) | 382 |
| FbaI | TGATCA | 3 cut(s) | 88, 595, 1659 |
| FblI | GTMKAC | 2 cut(s) | 972, 2061 |
| Fnu4HI | GCNGC | 6 cut(s) | 26, 142, 289, 335, 796, 1686 |
| FokI | GGATG | 6 cut(s) | 308, 687, 901, 1019, 1160, 2326 |
| FriOI | GRGCYC | 2 cut(s) | 129, 616 |
| Fsp4HI | GCNGC | 6 cut(s) | 26, 142, 289, 335, 796, 1686 |
| FspBI | CTAG | 5 cut(s) | 197, 360, 1370, 1530, 2238 |
| GlaI | GCGC | 2 cut(s) | 223, 576 |
| GluI | GCNGC | 6 cut(s) | 26, 142, 289, 335, 796, 1686 |
| GsuI | CTGGAG | 3 cut(s) | 113, 684, 2322 |
| HaeIII | GGCC | 5 cut(s) | 134, 620, 631, 679, 2348 |
| HapII | CCGG | 4 cut(s) | 82, 261, 338, 1047 |
| HgaI | GACGC | 4 cut(s) | 24, 488, 568, 1454 |
| HhaI | GCGC | 2 cut(s) | 224, 577 |
| Hin1I | GRCGYC | 2 cut(s) | 35, 1728 |
| Hin1II | CATG | 5 cut(s) | 451, 465, 541, 2313, 2347 |
| Hin6I | GCGC | 2 cut(s) | 222, 575 |
| HinP1I | GCGC | 2 cut(s) | 222, 575 |
| HincII | GTYRAC | 3 cut(s) | 543, 997, 1044 |
| HindII | GTYRAC | 3 cut(s) | 543, 997, 1044 |
| HindIII | AAGCTT | 1 cut(s) | 401 |
| HpaI | GTTAAC | 2 cut(s) | 543, 1044 |
| HpaII | CCGG | 4 cut(s) | 82, 261, 338, 1047 |
| HphI | GGTGA | 6 cut(s) | 385, 431, 892, 973, 1796, 1979 |
| Hpy166II | GTNNAC | 6 cut(s) | 543, 973, 997, 1044, 1201, 2062 |
| Hpy8I | GTNNAC | 6 cut(s) | 543, 973, 997, 1044, 1201, 2062 |
| Hpy99I | CGWCG | 2 cut(s) | 40, 1280 |
| HpyAV | CCTTC | 7 cut(s) | 73, 296, 343, 1619, 1705, 1808, 2311 |
| HpyCH4III | ACNGT | 7 cut(s) | 773, 1055, 1280, 1414, 1953, 1976, 1984 |
| HpyCH4IV | ACGT | 1 cut(s) | 1728 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 228, 237, 288, 392, 2204 |
| HpyF3I | CTNAG | 7 cut(s) | 30, 98, 626, 1164, 1556, 1607, 1989 |
| HpySE526I | ACGT | 1 cut(s) | 1728 |
| Hsp92I | GRCGYC | 2 cut(s) | 35, 1728 |
| Hsp92II | CATG | 5 cut(s) | 451, 465, 541, 2313, 2347 |
| HspAI | GCGC | 2 cut(s) | 222, 575 |
| Kpn2I | TCCGGA | 1 cut(s) | 81 |
| KroI | GCCGGC | 1 cut(s) | 337 |
| KroNI | GCCGGC | 1 cut(s) | 339 |
| Ksp22I | TGATCA | 3 cut(s) | 88, 595, 1659 |
| KspAI | GTTAAC | 2 cut(s) | 543, 1044 |
| LguI | GCTCTTC | 1 cut(s) | 882 |
| Lsp1109I | GCAGC | 5 cut(s) | 12, 300, 321, 807, 1672 |
| LweI | GCATC | 6 cut(s) | 421, 586, 923, 1481, 1642, 1906 |
| MaeI | CTAG | 5 cut(s) | 197, 360, 1370, 1530, 2238 |
| MaeII | ACGT | 1 cut(s) | 1728 |
| MaeIII | GTNAC | 2 cut(s) | 550, 1280 |
| MfeI | CAATTG | 1 cut(s) | 254 |
| MflI | RGATCY | 2 cut(s) | 185, 1804 |
| MhlI | GDGCHC | 4 cut(s) | 129, 616, 658, 2008 |
| MlsI | TGGCCA | 2 cut(s) | 620, 679 |
| MluNI | TGGCCA | 2 cut(s) | 620, 679 |
| MlyI | GAGTC | 3 cut(s) | 106, 377, 992 |
| MmeI | TCCRAC | 3 cut(s) | 134, 1836, 1958 |
| Mox20I | TGGCCA | 2 cut(s) | 620, 679 |
| MroI | TCCGGA | 1 cut(s) | 81 |
| MroNI | GCCGGC | 1 cut(s) | 337 |
| MroXI | GAANNNNTTC | 1 cut(s) | 780 |
| MscI | TGGCCA | 2 cut(s) | 620, 679 |
| MseI | TTAA | 9 cut(s) | 513, 522, 542, 759, 1043, 1305, 1358, 1562, 1680 |
| Msp20I | TGGCCA | 2 cut(s) | 620, 679 |
| MspA1I | CMGCKG | 1 cut(s) | 25 |
| MspI | CCGG | 4 cut(s) | 82, 261, 338, 1047 |
| MspR9I | CCNGG | 6 cut(s) | 104, 131, 635, 985, 1048, 1770 |
| MunI | CAATTG | 1 cut(s) | 254 |
| Mva1269I | GAATGC | 2 cut(s) | 469, 2059 |
| MvaI | CCWGG | 5 cut(s) | 104, 131, 635, 985, 1770 |
| MvnI | CGCG | 3 cut(s) | 222, 829, 852 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 228, 237, 288, 392, 2204 |
| NaeI | GCCGGC | 1 cut(s) | 339 |
| NciI | CCSGG | 1 cut(s) | 1048 |
| NdeI | CATATG | 1 cut(s) | 382 |
| NgoMIV | GCCGGC | 1 cut(s) | 337 |
| NlaIII | CATG | 5 cut(s) | 451, 465, 541, 2313, 2347 |
| NlaIV | GGNNCC | 5 cut(s) | 108, 179, 187, 632, 1572 |
| NmeAIII | GCCGAG | 1 cut(s) | 2374 |
| NruI | TCGCGA | 2 cut(s) | 829, 852 |
| NspI | RCATGY | 1 cut(s) | 541 |
| NspV | TTCGAA | 1 cut(s) | 1698 |
| PaqCI | CACCTGC | 1 cut(s) | 2081 |
| PciI | ACATGT | 1 cut(s) | 537 |
| PciSI | GCTCTTC | 1 cut(s) | 882 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1137, 1284 |
| PctI | GAATGC | 2 cut(s) | 469, 2059 |
| PdiI | GCCGGC | 1 cut(s) | 339 |
| PdmI | GAANNNNTTC | 1 cut(s) | 780 |
| PfeI | GAWTC | 7 cut(s) | 248, 269, 704, 1254, 1533, 1700, 1911 |
| PinAI | ACCGGT | 1 cut(s) | 260 |
| PkrI | GCNGC | 6 cut(s) | 27, 143, 290, 336, 797, 1687 |
| Ple19I | CGATCG | 1 cut(s) | 220 |
| PleI | GAGTC | 3 cut(s) | 106, 376, 992 |
| PpsI | GAGTC | 3 cut(s) | 106, 376, 992 |
| PpuMI | RGGWCCY | 1 cut(s) | 1571 |
| PscI | ACATGT | 1 cut(s) | 537 |
| PshBI | ATTAAT | 1 cut(s) | 1680 |
| Psp124BI | GAGCTC | 1 cut(s) | 129 |
| Psp5II | RGGWCCY | 1 cut(s) | 1571 |
| Psp6I | CCWGG | 5 cut(s) | 102, 129, 633, 983, 1768 |
| PspGI | CCWGG | 5 cut(s) | 102, 129, 633, 983, 1768 |
| PspN4I | GGNNCC | 5 cut(s) | 108, 179, 187, 632, 1572 |
| PspPI | GGNCC | 5 cut(s) | 13, 40, 133, 630, 1571 |
| PspPPI | RGGWCCY | 1 cut(s) | 1571 |
| PstI | CTGCAG | 1 cut(s) | 797 |
| PsuI | RGATCY | 2 cut(s) | 185, 1804 |
| PvuI | CGATCG | 1 cut(s) | 220 |
| RruI | TCGCGA | 2 cut(s) | 829, 852 |
| RsaI | GTAC | 4 cut(s) | 770, 866, 1052, 1162 |
| RsaNI | GTAC | 4 cut(s) | 769, 865, 1051, 1161 |
| SacI | GAGCTC | 1 cut(s) | 129 |
| SapI | GCTCTTC | 1 cut(s) | 882 |
| SaqAI | TTAA | 9 cut(s) | 513, 522, 542, 759, 1043, 1305, 1358, 1562, 1680 |
| SatI | GCNGC | 6 cut(s) | 26, 142, 289, 335, 796, 1686 |
| Sau96I | GGNCC | 5 cut(s) | 13, 40, 133, 630, 1571 |
| ScaI | AGTACT | 1 cut(s) | 770 |
| SchI | GAGTC | 3 cut(s) | 106, 377, 992 |
| ScrFI | CCNGG | 6 cut(s) | 104, 131, 635, 985, 1048, 1770 |
| SduI | GDGCHC | 4 cut(s) | 129, 616, 658, 2008 |
| SfaNI | GCATC | 6 cut(s) | 421, 586, 923, 1481, 1642, 1906 |
| SfcI | CTRYAG | 3 cut(s) | 639, 793, 800 |
| SfuI | TTCGAA | 1 cut(s) | 1698 |
| SinI | GGWCC | 3 cut(s) | 13, 40, 1571 |
| SmlI | CTYRAG | 2 cut(s) | 235, 836 |
| SmoI | CTYRAG | 2 cut(s) | 235, 836 |
| SsiI | CCGC | 3 cut(s) | 23, 141, 286 |
| SspMI | CTAG | 5 cut(s) | 197, 360, 1370, 1530, 2238 |
| SstI | GAGCTC | 1 cut(s) | 129 |
| StyD4I | CCNGG | 6 cut(s) | 102, 129, 633, 983, 1046, 1768 |
| StyI | CCWWGG | 2 cut(s) | 670, 1423 |
| TaaI | ACNGT | 7 cut(s) | 773, 1055, 1280, 1414, 1953, 1976, 1984 |
| TaiI | ACGT | 1 cut(s) | 1731 |
| TaqII | GACCGA | 1 cut(s) | 28 |
| TatI | WGTACW | 1 cut(s) | 768 |
| TauI | GCSGC | 1 cut(s) | 144 |
| TfiI | GAWTC | 7 cut(s) | 248, 269, 704, 1254, 1533, 1700, 1911 |
| Tru1I | TTAA | 9 cut(s) | 513, 522, 542, 759, 1043, 1305, 1358, 1562, 1680 |
| Tru9I | TTAA | 9 cut(s) | 513, 522, 542, 759, 1043, 1305, 1358, 1562, 1680 |
| TscAI | CASTG | 5 cut(s) | 143, 348, 1419, 1483, 1958 |
| TseI | GCWGC | 5 cut(s) | 25, 288, 334, 795, 1685 |
| TspDTI | ATGAA | 5 cut(s) | 464, 1047, 1181, 1254, 2330 |
| TspGWI | ACGGA | 2 cut(s) | 199, 1658 |
| TspRI | CASTG | 5 cut(s) | 143, 348, 1419, 1483, 1958 |
| VpaK11BI | GGWCC | 3 cut(s) | 13, 40, 1571 |
| VspI | ATTAAT | 1 cut(s) | 1680 |
| XapI | RAATTY | 6 cut(s) | 484, 953, 1586, 1887, 2047, 2283 |
| XceI | RCATGY | 1 cut(s) | 541 |
| XmiI | GTMKAC | 2 cut(s) | 972, 2061 |
| XmnI | GAANNNNTTC | 1 cut(s) | 780 |
| XspI | CTAG | 5 cut(s) | 197, 360, 1370, 1530, 2238 |
| ZraI | GACGTC | 1 cut(s) | 1729 |
| ZrmI | AGTACT | 1 cut(s) | 770 |