Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1770 |
| AatII | GACGTC | 1 cut(s) | 1412 |
| Acc65I | GGTACC | 1 cut(s) | 879 |
| AccB1I | GGYRCC | 1 cut(s) | 879 |
| AccBSI | CCGCTC | 1 cut(s) | 1272 |
| AciI | CCGC | 7 cut(s) | 51, 614, 715, 808, 1272, 1936, 2198 |
| AcoI | YGGCCR | 2 cut(s) | 1459, 2126 |
| AcsI | RAATTY | 8 cut(s) | 136, 383, 850, 1367, 1629, 2001, 2236, 2360 |
| AcuI | CTGAAG | 1 cut(s) | 75 |
| AcvI | CACGTG | 1 cut(s) | 14 |
| AcyI | GRCGYC | 1 cut(s) | 1409 |
| AfaI | GTAC | 5 cut(s) | 303, 803, 881, 1292, 2196 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 740, 1457, 1648 |
| AflII | CTTAAG | 2 cut(s) | 149, 1331 |
| AflIII | ACRYGT | 3 cut(s) | 11, 908, 1961 |
| AjnI | CCWGG | 1 cut(s) | 1578 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 390, 422, 1277, 1309, 1455, 1487 |
| AleI | CACNNNNGTG | 1 cut(s) | 1821 |
| Alw21I | GWGCWC | 4 cut(s) | 816, 1818, 2068, 2289 |
| Alw26I | GTCTC | 2 cut(s) | 683, 862 |
| Alw44I | GTGCAC | 1 cut(s) | 1814 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 53 |
| Ama87I | CYCGRG | 1 cut(s) | 517 |
| AoxI | GGCC | 3 cut(s) | 1459, 2126, 2338 |
| ApaLI | GTGCAC | 1 cut(s) | 1814 |
| ApeKI | GCWGC | 9 cut(s) | 29, 109, 191, 578, 581, 1542, 1861, 1990, 1993 |
| ApoI | RAATTY | 8 cut(s) | 136, 383, 850, 1367, 1629, 2001, 2236, 2360 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 368, 400, 464, 496 |
| AseI | ATTAAT | 2 cut(s) | 401, 902 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1629 |
| Asp718I | GGTACC | 1 cut(s) | 879 |
| AspS9I | GGNCC | 1 cut(s) | 1167 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 482, 572, 856 |
| AsuII | TTCGAA | 1 cut(s) | 1365 |
| AvaI | CYCGRG | 1 cut(s) | 517 |
| AvaII | GGWCC | 1 cut(s) | 1167 |
| BaeGI | GKGCMC | 1 cut(s) | 1818 |
| BalI | TGGCCA | 2 cut(s) | 1461, 2128 |
| BanI | GGYRCC | 1 cut(s) | 879 |
| BanII | GRGCYC | 1 cut(s) | 46 |
| BbrPI | CACGTG | 1 cut(s) | 14 |
| BbsI | GAAGAC | 2 cut(s) | 986, 1223 |
| Bbv12I | GWGCWC | 4 cut(s) | 816, 1818, 2068, 2289 |
| BbvI | GCAGC | 9 cut(s) | 16, 121, 178, 565, 568, 1554, 1873, 1977, 2005 |
| BccI | CCATC | 7 cut(s) | 275, 409, 567, 665, 1352, 1670, 2146 |
| BceAI | ACGGC | 1 cut(s) | 1236 |
| BciT130I | CCWGG | 1 cut(s) | 1580 |
| BcoDI | GTCTC | 2 cut(s) | 683, 862 |
| BfaI | CTAG | 2 cut(s) | 2121, 2270 |
| BfmI | CTRYAG | 3 cut(s) | 582, 1484, 1991 |
| BfrI | CTTAAG | 2 cut(s) | 149, 1331 |
| BmcAI | AGTACT | 3 cut(s) | 303, 803, 1292 |
| Bme1390I | CCNGG | 1 cut(s) | 1580 |
| Bme18I | GGWCC | 1 cut(s) | 1167 |
| BmeT110I | CYCGRG | 1 cut(s) | 517 |
| BmgT120I | GGNCC | 1 cut(s) | 1167 |
| BmiI | GGNNCC | 3 cut(s) | 43, 881, 1168 |
| BmrFI | CCNGG | 1 cut(s) | 1580 |
| BmrI | ACTGGG | 1 cut(s) | 293 |
| BmsI | GCATC | 6 cut(s) | 1136, 1165, 1201, 2081, 2248, 2318 |
| BmuI | ACTGGG | 1 cut(s) | 293 |
| BpiI | GAAGAC | 2 cut(s) | 986, 1223 |
| BpmI | CTGGAG | 3 cut(s) | 720, 1871, 2303 |
| Bpu14I | TTCGAA | 1 cut(s) | 1365 |
| BpuEI | CTTGAG | 3 cut(s) | 452, 1192, 2054 |
| BsaAI | YACGTR | 1 cut(s) | 14 |
| BsaHI | GRCGYC | 1 cut(s) | 1409 |
| BsaJI | CCNNGG | 3 cut(s) | 516, 840, 1666 |
| BsaWI | WCCGGW | 1 cut(s) | 740 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1289, 1319 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 740, 1457, 1648 |
| Bse1I | ACTGG | 8 cut(s) | 238, 258, 299, 1503, 1556, 1854, 1948, 2092 |
| Bse3DI | GCAATG | 1 cut(s) | 1151 |
| BseBI | CCWGG | 1 cut(s) | 1580 |
| BseDI | CCNNGG | 3 cut(s) | 516, 840, 1666 |
| BseGI | GGATG | 8 cut(s) | 262, 420, 1216, 1387, 1662, 2096, 2263, 2318 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 740, 1457, 1648 |
| BseMI | GCAATG | 1 cut(s) | 1151 |
| BseMII | CTCAG | 4 cut(s) | 296, 638, 909, 1515 |
| BseNI | ACTGG | 8 cut(s) | 238, 258, 299, 1503, 1556, 1854, 1948, 2092 |
| BseRI | GAGGAG | 1 cut(s) | 1443 |
| BseSI | GKGCMC | 1 cut(s) | 1818 |
| BseXI | GCAGC | 9 cut(s) | 16, 121, 178, 565, 568, 1554, 1873, 1977, 2005 |
| BseYI | CCCAGC | 2 cut(s) | 46, 2261 |
| BsgI | GTGCAG | 2 cut(s) | 1327, 1561 |
| BshFI | GGCC | 3 cut(s) | 1461, 2128, 2340 |
| BshNI | GGYRCC | 1 cut(s) | 879 |
| BsiHKAI | GWGCWC | 4 cut(s) | 816, 1818, 2068, 2289 |
| BsiHKCI | CYCGRG | 1 cut(s) | 517 |
| BsiSI | CCGG | 1 cut(s) | 741 |
| BslFI | GGGAC | 2 cut(s) | 460, 1180 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 740, 1457, 1648 |
| BsmAI | GTCTC | 2 cut(s) | 683, 862 |
| BsmFI | GGGAC | 2 cut(s) | 460, 1180 |
| BsmI | GAATGC | 1 cut(s) | 1571 |
| BsnI | GGCC | 3 cut(s) | 1461, 2128, 2340 |
| BsoBI | CYCGRG | 1 cut(s) | 517 |
| Bsp119I | TTCGAA | 1 cut(s) | 1365 |
| Bsp1286I | GDGCHC | 5 cut(s) | 46, 816, 1818, 2068, 2289 |
| Bsp143I | GATC | 1 cut(s) | 886 |
| BspACI | CCGC | 7 cut(s) | 51, 614, 715, 808, 1272, 1936, 2198 |
| BspANI | GGCC | 3 cut(s) | 1461, 2128, 2340 |
| BspCNI | CTCAG | 4 cut(s) | 297, 639, 910, 1516 |
| BspLI | GGNNCC | 3 cut(s) | 43, 881, 1168 |
| BspMAI | CTGCAG | 3 cut(s) | 586, 1488, 1995 |
| BspT104I | TTCGAA | 1 cut(s) | 1365 |
| BspT107I | GGYRCC | 1 cut(s) | 879 |
| BspTI | CTTAAG | 2 cut(s) | 149, 1331 |
| BsrBI | CCGCTC | 1 cut(s) | 1272 |
| BsrDI | GCAATG | 1 cut(s) | 1151 |
| BsrI | ACTGG | 8 cut(s) | 238, 258, 299, 1503, 1556, 1854, 1948, 2092 |
| BssECI | CCNNGG | 3 cut(s) | 516, 840, 1666 |
| BssMI | GATC | 1 cut(s) | 886 |
| BssNI | GRCGYC | 1 cut(s) | 1409 |
| BssT1I | CCWWGG | 1 cut(s) | 1666 |
| Bst2UI | CCWGG | 1 cut(s) | 1580 |
| Bst4CI | ACNGT | 6 cut(s) | 501, 530, 879, 1149, 1439, 2381 |
| Bst6I | CTCTTC | 3 cut(s) | 335, 1737, 1947 |
| BstACI | GRCGYC | 1 cut(s) | 1409 |
| BstAFI | CTTAAG | 2 cut(s) | 149, 1331 |
| BstBAI | YACGTR | 1 cut(s) | 14 |
| BstBI | TTCGAA | 1 cut(s) | 1365 |
| BstC8I | GCNNGC | 4 cut(s) | 438, 713, 932, 1547 |
| BstDEI | CTNAG | 7 cut(s) | 305, 647, 663, 918, 1524, 2060, 2366 |
| BstF5I | GGATG | 8 cut(s) | 262, 420, 1216, 1387, 1662, 2096, 2263, 2318 |
| BstKTI | GATC | 1 cut(s) | 889 |
| BstMAI | GTCTC | 2 cut(s) | 683, 862 |
| BstMBI | GATC | 1 cut(s) | 886 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 50, 575, 1096, 1220, 1278, 1336, 1852, 1861, 2337 |
| BstNI | CCWGG | 1 cut(s) | 1580 |
| BstNSI | RCATGY | 5 cut(s) | 116, 930, 934, 1588, 1965 |
| BstSCI | CCNGG | 1 cut(s) | 1578 |
| BstSFI | CTRYAG | 3 cut(s) | 582, 1484, 1991 |
| BstSLI | GKGCMC | 1 cut(s) | 1818 |
| BstV1I | GCAGC | 9 cut(s) | 16, 121, 178, 565, 568, 1554, 1873, 1977, 2005 |
| BstV2I | GAAGAC | 2 cut(s) | 986, 1223 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1705 |
| BsuRI | GGCC | 3 cut(s) | 1461, 2128, 2340 |
| BtsCI | GGATG | 8 cut(s) | 262, 420, 1216, 1387, 1662, 2096, 2263, 2318 |
| BtsI | GCAGTG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 2 cut(s) | 181, 1563 |
| Cac8I | GCNNGC | 4 cut(s) | 438, 713, 932, 1547 |
| CaiI | CAGNNNCTG | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 1 cut(s) | 1167 |
| CseI | GACGC | 1 cut(s) | 1985 |
| Csp6I | GTAC | 5 cut(s) | 302, 802, 880, 1291, 2195 |
| CviQI | GTAC | 5 cut(s) | 302, 802, 880, 1291, 2195 |
| DdeI | CTNAG | 7 cut(s) | 305, 647, 663, 918, 1524, 2060, 2366 |
| DpnI | GATC | 1 cut(s) | 888 |
| DpnII | GATC | 1 cut(s) | 886 |
| DraI | TTTAAA | 1 cut(s) | 69 |
| EaeI | YGGCCR | 2 cut(s) | 1459, 2126 |
| Eam1104I | CTCTTC | 3 cut(s) | 335, 1737, 1947 |
| EarI | CTCTTC | 3 cut(s) | 335, 1737, 1947 |
| Eco130I | CCWWGG | 1 cut(s) | 1666 |
| Eco24I | GRGCYC | 1 cut(s) | 46 |
| Eco32I | GATATC | 1 cut(s) | 466 |
| Eco47I | GGWCC | 1 cut(s) | 1167 |
| Eco57I | CTGAAG | 1 cut(s) | 75 |
| Eco72I | CACGTG | 1 cut(s) | 14 |
| Eco88I | CYCGRG | 1 cut(s) | 517 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1167 |
| EcoRII | CCWGG | 1 cut(s) | 1578 |
| EcoRV | GATATC | 1 cut(s) | 466 |
| EcoT14I | CCWWGG | 1 cut(s) | 1666 |
| EcoT22I | ATGCAT | 3 cut(s) | 549, 932, 1571 |
| EcoT38I | GRGCYC | 1 cut(s) | 46 |
| ErhI | CCWWGG | 1 cut(s) | 1666 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 332, 364, 1277, 1309 |
| FaqI | GGGAC | 2 cut(s) | 460, 1180 |
| FauI | CCCGC | 1 cut(s) | 801 |
| FauNDI | CATATG | 1 cut(s) | 1857 |
| FokI | GGATG | 8 cut(s) | 269, 427, 1223, 1374, 1649, 2103, 2270, 2305 |
| FriOI | GRGCYC | 1 cut(s) | 46 |
| FspBI | CTAG | 2 cut(s) | 2121, 2270 |
| GsaI | CCCAGC | 2 cut(s) | 50, 2265 |
| GsuI | CTGGAG | 3 cut(s) | 720, 1871, 2303 |
| HaeIII | GGCC | 3 cut(s) | 1461, 2128, 2340 |
| HapII | CCGG | 1 cut(s) | 741 |
| HgaI | GACGC | 1 cut(s) | 1985 |
| Hin1I | GRCGYC | 1 cut(s) | 1409 |
| HincII | GTYRAC | 4 cut(s) | 118, 924, 1080, 1959 |
| HindII | GTYRAC | 4 cut(s) | 118, 924, 1080, 1959 |
| HindIII | AAGCTT | 3 cut(s) | 1328, 1655, 1922 |
| HinfI | GANTC | 9 cut(s) | 73, 637, 920, 1081, 1443, 1709, 1887, 2033, 2156 |
| HpaI | GTTAAC | 1 cut(s) | 118 |
| HpaII | CCGG | 1 cut(s) | 741 |
| HphI | GGTGA | 4 cut(s) | 16, 482, 572, 856 |
| Hpy166II | GTNNAC | 6 cut(s) | 118, 924, 1080, 1816, 1959, 2384 |
| Hpy188III | TCNNGA | 5 cut(s) | 699, 2054, 2114, 2138, 2282 |
| Hpy8I | GTNNAC | 6 cut(s) | 118, 924, 1080, 1816, 1959, 2384 |
| Hpy99I | CGWCG | 1 cut(s) | 2001 |
| HpyCH4III | ACNGT | 6 cut(s) | 501, 530, 879, 1149, 1439, 2381 |
| HpyCH4IV | ACGT | 7 cut(s) | 13, 217, 908, 950, 1018, 1409, 1574 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 50, 575, 1096, 1220, 1278, 1336, 1852, 1861, 2337 |
| HpyF3I | CTNAG | 7 cut(s) | 305, 647, 663, 918, 1524, 2060, 2366 |
| HpySE526I | ACGT | 7 cut(s) | 13, 217, 908, 950, 1018, 1409, 1574 |
| Hsp92I | GRCGYC | 1 cut(s) | 1409 |
| KpnI | GGTACC | 1 cut(s) | 883 |
| KspAI | GTTAAC | 1 cut(s) | 118 |
| Kzo9I | GATC | 1 cut(s) | 886 |
| LmnI | GCTCC | 8 cut(s) | 41, 487, 701, 1269, 1336, 1852, 2266, 2284 |
| Lsp1109I | GCAGC | 9 cut(s) | 16, 121, 178, 565, 568, 1554, 1873, 1977, 2005 |
| LweI | GCATC | 6 cut(s) | 1136, 1165, 1201, 2081, 2248, 2318 |
| MaeI | CTAG | 2 cut(s) | 2121, 2270 |
| MaeII | ACGT | 7 cut(s) | 13, 217, 908, 950, 1018, 1409, 1574 |
| MaeIII | GTNAC | 6 cut(s) | 4, 163, 470, 650, 844, 2375 |
| MalI | GATC | 1 cut(s) | 888 |
| MbiI | CCGCTC | 1 cut(s) | 1272 |
| MboI | GATC | 1 cut(s) | 886 |
| MfeI | CAATTG | 3 cut(s) | 794, 1259, 1758 |
| MhlI | GDGCHC | 5 cut(s) | 46, 816, 1818, 2068, 2289 |
| MlsI | TGGCCA | 2 cut(s) | 1461, 2128 |
| MluNI | TGGCCA | 2 cut(s) | 1461, 2128 |
| MlyI | GAGTC | 7 cut(s) | 67, 646, 929, 1075, 1881, 2027, 2165 |
| MmeI | TCCRAC | 2 cut(s) | 1159, 1542 |
| Mox20I | TGGCCA | 2 cut(s) | 1461, 2128 |
| Mph1103I | ATGCAT | 3 cut(s) | 549, 932, 1571 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1629 |
| MscI | TGGCCA | 2 cut(s) | 1461, 2128 |
| MseI | TTAA | 8 cut(s) | 68, 117, 150, 401, 902, 953, 1332, 1830 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1161, 1779, 1821, 1966 |
| Msp20I | TGGCCA | 2 cut(s) | 1461, 2128 |
| MspA1I | CMGCKG | 1 cut(s) | 53 |
| MspCI | CTTAAG | 2 cut(s) | 149, 1331 |
| MspI | CCGG | 1 cut(s) | 741 |
| MspR9I | CCNGG | 1 cut(s) | 1580 |
| MunI | CAATTG | 3 cut(s) | 794, 1259, 1758 |
| Mva1269I | GAATGC | 1 cut(s) | 1571 |
| MvaI | CCWGG | 1 cut(s) | 1580 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 50, 575, 1096, 1220, 1278, 1336, 1852, 1861, 2337 |
| NdeI | CATATG | 1 cut(s) | 1857 |
| NdeII | GATC | 1 cut(s) | 886 |
| NlaIV | GGNNCC | 3 cut(s) | 43, 881, 1168 |
| NmuCI | GTSAC | 4 cut(s) | 4, 470, 844, 2375 |
| NsiI | ATGCAT | 3 cut(s) | 549, 932, 1571 |
| NspI | RCATGY | 5 cut(s) | 116, 930, 934, 1588, 1965 |
| NspV | TTCGAA | 1 cut(s) | 1365 |
| OliI | CACNNNNGTG | 1 cut(s) | 1821 |
| PaeI | GCATGC | 1 cut(s) | 934 |
| PciI | ACATGT | 1 cut(s) | 1961 |
| PctI | GAATGC | 1 cut(s) | 1571 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1629 |
| PfeI | GAWTC | 2 cut(s) | 1443, 1709 |
| PfoI | TCCNGGA | 1 cut(s) | 1578 |
| PleI | GAGTC | 7 cut(s) | 67, 645, 928, 1075, 1881, 2027, 2164 |
| PmaCI | CACGTG | 1 cut(s) | 14 |
| PmlI | CACGTG | 1 cut(s) | 14 |
| PpsI | GAGTC | 7 cut(s) | 67, 645, 928, 1075, 1881, 2027, 2164 |
| Ppu21I | YACGTR | 1 cut(s) | 14 |
| PpuMI | RGGWCCY | 1 cut(s) | 1167 |
| PscI | ACATGT | 1 cut(s) | 1961 |
| PshBI | ATTAAT | 2 cut(s) | 401, 902 |
| PsiI | TTATAA | 1 cut(s) | 1770 |
| Psp5II | RGGWCCY | 1 cut(s) | 1167 |
| Psp6I | CCWGG | 1 cut(s) | 1578 |
| PspCI | CACGTG | 1 cut(s) | 14 |
| PspFI | CCCAGC | 2 cut(s) | 46, 2261 |
| PspGI | CCWGG | 1 cut(s) | 1578 |
| PspN4I | GGNNCC | 3 cut(s) | 43, 881, 1168 |
| PspPI | GGNCC | 1 cut(s) | 1167 |
| PspPPI | RGGWCCY | 1 cut(s) | 1167 |
| PstI | CTGCAG | 3 cut(s) | 586, 1488, 1995 |
| PstNI | CAGNNNCTG | 1 cut(s) | 53 |
| RsaI | GTAC | 5 cut(s) | 303, 803, 881, 1292, 2196 |
| RsaNI | GTAC | 5 cut(s) | 302, 802, 880, 1291, 2195 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1161, 1779, 1821, 1966 |
| SaqAI | TTAA | 8 cut(s) | 68, 117, 150, 401, 902, 953, 1332, 1830 |
| Sau3AI | GATC | 1 cut(s) | 886 |
| Sau96I | GGNCC | 1 cut(s) | 1167 |
| ScaI | AGTACT | 3 cut(s) | 303, 803, 1292 |
| SchI | GAGTC | 7 cut(s) | 67, 646, 929, 1075, 1881, 2027, 2165 |
| ScrFI | CCNGG | 1 cut(s) | 1580 |
| SduI | GDGCHC | 5 cut(s) | 46, 816, 1818, 2068, 2289 |
| SfaNI | GCATC | 6 cut(s) | 1136, 1165, 1201, 2081, 2248, 2318 |
| SfcI | CTRYAG | 3 cut(s) | 582, 1484, 1991 |
| SfuI | TTCGAA | 1 cut(s) | 1365 |
| SinI | GGWCC | 1 cut(s) | 1167 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1161, 1779, 1821, 1966 |
| SmlI | CTYRAG | 5 cut(s) | 149, 431, 1171, 1331, 2069 |
| SmoI | CTYRAG | 5 cut(s) | 149, 431, 1171, 1331, 2069 |
| SphI | GCATGC | 1 cut(s) | 934 |
| SsiI | CCGC | 7 cut(s) | 51, 614, 715, 808, 1272, 1936, 2198 |
| SspI | AATATT | 3 cut(s) | 479, 957, 2011 |
| SspMI | CTAG | 2 cut(s) | 2121, 2270 |
| StyD4I | CCNGG | 1 cut(s) | 1578 |
| StyI | CCWWGG | 1 cut(s) | 1666 |
| TaaI | ACNGT | 6 cut(s) | 501, 530, 879, 1149, 1439, 2381 |
| TaiI | ACGT | 7 cut(s) | 16, 220, 911, 953, 1021, 1412, 1577 |
| TaqI | TCGA | 5 cut(s) | 1365, 1441, 1633, 1890, 1999 |
| TaqII | GACCGA | 1 cut(s) | 854 |
| TatI | WGTACW | 3 cut(s) | 301, 801, 1290 |
| TauI | GCSGC | 2 cut(s) | 53, 1275 |
| TfiI | GAWTC | 2 cut(s) | 1443, 1709 |
| Tru1I | TTAA | 8 cut(s) | 68, 117, 150, 401, 902, 953, 1332, 1830 |
| Tru9I | TTAA | 8 cut(s) | 68, 117, 150, 401, 902, 953, 1332, 1830 |
| TscAI | CASTG | 2 cut(s) | 181, 1563 |
| TseFI | GTSAC | 4 cut(s) | 4, 470, 844, 2375 |
| TseI | GCWGC | 9 cut(s) | 29, 109, 191, 578, 581, 1542, 1861, 1990, 1993 |
| Tsp45I | GTSAC | 4 cut(s) | 4, 470, 844, 2375 |
| TspGWI | ACGGA | 1 cut(s) | 844 |
| TspRI | CASTG | 2 cut(s) | 181, 1563 |
| Vha464I | CTTAAG | 2 cut(s) | 149, 1331 |
| VneI | GTGCAC | 1 cut(s) | 1814 |
| VpaK11BI | GGWCC | 1 cut(s) | 1167 |
| VspI | ATTAAT | 2 cut(s) | 401, 902 |
| XapI | RAATTY | 8 cut(s) | 136, 383, 850, 1367, 1629, 2001, 2236, 2360 |
| XceI | RCATGY | 5 cut(s) | 116, 930, 934, 1588, 1965 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2121 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1629 |
| XspI | CTAG | 2 cut(s) | 2121, 2270 |
| ZraI | GACGTC | 1 cut(s) | 1410 |
| ZrmI | AGTACT | 3 cut(s) | 303, 803, 1292 |
| Zsp2I | ATGCAT | 3 cut(s) | 549, 932, 1571 |