Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 350 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 749 |
| AccII | CGCG | 1 cut(s) | 912 |
| AccIII | TCCGGA | 1 cut(s) | 505 |
| AciI | CCGC | 3 cut(s) | 267, 468, 910 |
| AcoI | YGGCCR | 1 cut(s) | 648 |
| AcsI | RAATTY | 2 cut(s) | 117, 177 |
| AdeI | CACNNNGTG | 2 cut(s) | 701, 749 |
| AfaI | GTAC | 4 cut(s) | 291, 668, 876, 1053 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 347, 505, 749, 996, 997 |
| AflII | CTTAAG | 1 cut(s) | 560 |
| AgsI | TTSAA | 2 cut(s) | 133, 433 |
| AluBI | AGCT | 7 cut(s) | 34, 503, 688, 780, 788, 848, 929 |
| AluI | AGCT | 7 cut(s) | 34, 503, 688, 780, 788, 848, 929 |
| Alw21I | GWGCWC | 1 cut(s) | 498 |
| Alw26I | GTCTC | 2 cut(s) | 86, 582 |
| Alw44I | GTGCAC | 1 cut(s) | 494 |
| Aor13HI | TCCGGA | 1 cut(s) | 505 |
| AoxI | GGCC | 2 cut(s) | 648, 1024 |
| ApaLI | GTGCAC | 1 cut(s) | 494 |
| ApeKI | GCWGC | 2 cut(s) | 544, 848 |
| ApoI | RAATTY | 2 cut(s) | 117, 177 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 455 |
| AspLEI | GCGC | 1 cut(s) | 914 |
| AspS9I | GGNCC | 1 cut(s) | 470 |
| AsuC2I | CCSGG | 1 cut(s) | 824 |
| AsuHPI | GGTGA | 2 cut(s) | 460, 563 |
| AvaII | GGWCC | 1 cut(s) | 470 |
| BaeGI | GKGCMC | 2 cut(s) | 355, 498 |
| BalI | TGGCCA | 1 cut(s) | 650 |
| BanI | GGYRCC | 1 cut(s) | 350 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 709, 741 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| Bbv12I | GWGCWC | 1 cut(s) | 498 |
| BbvCI | CCTCAGC | 1 cut(s) | 894 |
| BbvI | GCAGC | 2 cut(s) | 531, 835 |
| BccI | CCATC | 3 cut(s) | 410, 767, 989 |
| BciVI | GTATCC | 1 cut(s) | 327 |
| BclI | TGATCA | 1 cut(s) | 829 |
| BcnI | CCSGG | 1 cut(s) | 824 |
| BcoDI | GTCTC | 2 cut(s) | 86, 582 |
| BfaI | CTAG | 4 cut(s) | 249, 356, 858, 1057 |
| BfrI | CTTAAG | 1 cut(s) | 560 |
| BfuI | GTATCC | 1 cut(s) | 327 |
| BisI | GCNGC | 2 cut(s) | 545, 849 |
| BlsI | GCNGC | 2 cut(s) | 546, 850 |
| Bme1390I | CCNGG | 1 cut(s) | 824 |
| Bme18I | GGWCC | 1 cut(s) | 470 |
| BmgT120I | GGNCC | 1 cut(s) | 470 |
| BmiI | GGNNCC | 1 cut(s) | 352 |
| BmrFI | CCNGG | 1 cut(s) | 824 |
| BmsI | GCATC | 2 cut(s) | 565, 617 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| Bpu10I | CCTNAGC | 1 cut(s) | 894 |
| BpuMI | CCSGG | 1 cut(s) | 824 |
| BsaWI | WCCGGW | 1 cut(s) | 505 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 53, 83, 998, 1028 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 347, 505, 749, 996, 997 |
| Bse118I | RCCGGY | 1 cut(s) | 914 |
| Bse1I | ACTGG | 1 cut(s) | 927 |
| Bse3DI | GCAATG | 2 cut(s) | 838, 884 |
| BseAI | TCCGGA | 1 cut(s) | 505 |
| BseGI | GGATG | 5 cut(s) | 258, 632, 663, 832, 952 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 347, 505, 749, 996, 997 |
| BseMI | GCAATG | 2 cut(s) | 838, 884 |
| BseMII | CTCAG | 2 cut(s) | 87, 885 |
| BseNI | ACTGG | 1 cut(s) | 927 |
| BseRI | GAGGAG | 3 cut(s) | 153, 1016, 1019 |
| BseSI | GKGCMC | 2 cut(s) | 355, 498 |
| BseXI | GCAGC | 2 cut(s) | 531, 835 |
| BseYI | CCCAGC | 2 cut(s) | 487, 499 |
| Bsh1236I | CGCG | 1 cut(s) | 912 |
| BshFI | GGCC | 2 cut(s) | 650, 1026 |
| BshNI | GGYRCC | 1 cut(s) | 350 |
| BsiHKAI | GWGCWC | 1 cut(s) | 498 |
| BsiSI | CCGG | 4 cut(s) | 506, 823, 915, 1027 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 347, 505, 749, 996, 997 |
| BsmAI | GTCTC | 2 cut(s) | 86, 582 |
| BsnI | GGCC | 2 cut(s) | 650, 1026 |
| Bsp1286I | GDGCHC | 2 cut(s) | 355, 498 |
| Bsp13I | TCCGGA | 1 cut(s) | 505 |
| Bsp1407I | TGTACA | 1 cut(s) | 874 |
| Bsp143I | GATC | 2 cut(s) | 145, 829 |
| BspACI | CCGC | 3 cut(s) | 267, 468, 910 |
| BspANI | GGCC | 2 cut(s) | 650, 1026 |
| BspCNI | CTCAG | 3 cut(s) | 4, 88, 886 |
| BspEI | TCCGGA | 1 cut(s) | 505 |
| BspFNI | CGCG | 1 cut(s) | 912 |
| BspLI | GGNNCC | 1 cut(s) | 352 |
| BspT107I | GGYRCC | 1 cut(s) | 350 |
| BspTI | CTTAAG | 1 cut(s) | 560 |
| BsrDI | GCAATG | 2 cut(s) | 838, 884 |
| BsrFI | RCCGGY | 1 cut(s) | 914 |
| BsrGI | TGTACA | 1 cut(s) | 874 |
| BsrI | ACTGG | 1 cut(s) | 927 |
| BssAI | RCCGGY | 1 cut(s) | 914 |
| BssMI | GATC | 2 cut(s) | 145, 829 |
| Bst4CI | ACNGT | 1 cut(s) | 879 |
| BstAFI | CTTAAG | 1 cut(s) | 560 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 701, 890 |
| BstAUI | TGTACA | 1 cut(s) | 874 |
| BstC8I | GCNNGC | 5 cut(s) | 308, 312, 422, 891, 916 |
| BstDEI | CTNAG | 4 cut(s) | 12, 96, 705, 894 |
| BstF5I | GGATG | 5 cut(s) | 258, 632, 663, 832, 952 |
| BstFNI | CGCG | 1 cut(s) | 912 |
| BstHHI | GCGC | 1 cut(s) | 914 |
| BstKTI | GATC | 2 cut(s) | 148, 832 |
| BstMAI | GTCTC | 2 cut(s) | 86, 582 |
| BstMBI | GATC | 2 cut(s) | 145, 829 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 553, 701, 854, 890 |
| BstNSI | RCATGY | 6 cut(s) | 310, 314, 424, 428, 725, 893 |
| BstSCI | CCNGG | 1 cut(s) | 822 |
| BstSLI | GKGCMC | 2 cut(s) | 355, 498 |
| BstUI | CGCG | 1 cut(s) | 912 |
| BstV1I | GCAGC | 2 cut(s) | 531, 835 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BsuI | GTATCC | 1 cut(s) | 327 |
| BsuRI | GGCC | 2 cut(s) | 650, 1026 |
| BtsCI | GGATG | 5 cut(s) | 258, 632, 663, 832, 952 |
| BtsI | GCAGTG | 2 cut(s) | 392, 498 |
| BtsIMutI | CAGTG | 3 cut(s) | 9, 392, 498 |
| Cac8I | GCNNGC | 5 cut(s) | 308, 312, 422, 891, 916 |
| CfoI | GCGC | 1 cut(s) | 914 |
| Cfr10I | RCCGGY | 1 cut(s) | 914 |
| Cfr13I | GGNCC | 1 cut(s) | 470 |
| CseI | GACGC | 1 cut(s) | 228 |
| Csp6I | GTAC | 4 cut(s) | 290, 667, 875, 1052 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 627, 662, 680, 715 |
| CviQI | GTAC | 4 cut(s) | 290, 667, 875, 1052 |
| DdeI | CTNAG | 4 cut(s) | 12, 96, 705, 894 |
| DpnI | GATC | 2 cut(s) | 147, 831 |
| DpnII | GATC | 2 cut(s) | 145, 829 |
| DraIII | CACNNNGTG | 2 cut(s) | 701, 749 |
| EaeI | YGGCCR | 1 cut(s) | 648 |
| Eco47I | GGWCC | 1 cut(s) | 470 |
| EcoT22I | ATGCAT | 3 cut(s) | 312, 316, 426 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 554, 586 |
| FbaI | TGATCA | 1 cut(s) | 829 |
| Fnu4HI | GCNGC | 2 cut(s) | 545, 849 |
| FokI | GGATG | 5 cut(s) | 265, 639, 670, 839, 959 |
| Fsp4HI | GCNGC | 2 cut(s) | 545, 849 |
| FspBI | CTAG | 4 cut(s) | 249, 356, 858, 1057 |
| GlaI | GCGC | 1 cut(s) | 913 |
| GluI | GCNGC | 2 cut(s) | 545, 849 |
| GsaI | CCCAGC | 2 cut(s) | 491, 503 |
| HaeIII | GGCC | 2 cut(s) | 650, 1026 |
| HapII | CCGG | 4 cut(s) | 506, 823, 915, 1027 |
| HgaI | GACGC | 1 cut(s) | 228 |
| HhaI | GCGC | 1 cut(s) | 914 |
| Hin6I | GCGC | 1 cut(s) | 912 |
| HinP1I | GCGC | 1 cut(s) | 912 |
| HindIII | AAGCTT | 1 cut(s) | 778 |
| HinfI | GANTC | 2 cut(s) | 902, 962 |
| HpaII | CCGG | 4 cut(s) | 506, 823, 915, 1027 |
| HphI | GGTGA | 2 cut(s) | 460, 563 |
| Hpy166II | GTNNAC | 7 cut(s) | 286, 451, 496, 743, 752, 766, 1054 |
| Hpy188I | TCNGA | 3 cut(s) | 212, 967, 1018 |
| Hpy188III | TCNNGA | 2 cut(s) | 460, 506 |
| Hpy8I | GTNNAC | 7 cut(s) | 286, 451, 496, 743, 752, 766, 1054 |
| HpyAV | CCTTC | 1 cut(s) | 711 |
| HpyCH4III | ACNGT | 1 cut(s) | 879 |
| HpyCH4IV | ACGT | 2 cut(s) | 288, 697 |
| HpyCH4V | TGCA | 9 cut(s) | 310, 314, 385, 424, 496, 547, 843, 884, 889 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 553, 701, 854, 890 |
| HpyF3I | CTNAG | 4 cut(s) | 12, 96, 705, 894 |
| HpySE526I | ACGT | 2 cut(s) | 288, 697 |
| HspAI | GCGC | 1 cut(s) | 912 |
| Kpn2I | TCCGGA | 1 cut(s) | 505 |
| KroI | GCCGGC | 1 cut(s) | 914 |
| KroNI | GCCGGC | 1 cut(s) | 916 |
| Ksp22I | TGATCA | 1 cut(s) | 829 |
| Kzo9I | GATC | 2 cut(s) | 145, 829 |
| LmnI | GCTCC | 4 cut(s) | 140, 220, 508, 693 |
| LpnPI | CCDG | 9 cut(s) | 445, 501, 513, 519, 774, 836, 908, 928, 1040 |
| Lsp1109I | GCAGC | 2 cut(s) | 531, 835 |
| LweI | GCATC | 2 cut(s) | 565, 617 |
| MaeI | CTAG | 4 cut(s) | 249, 356, 858, 1057 |
| MaeII | ACGT | 2 cut(s) | 288, 697 |
| MaeIII | GTNAC | 2 cut(s) | 724, 903 |
| MalI | GATC | 2 cut(s) | 147, 831 |
| MboI | GATC | 2 cut(s) | 145, 829 |
| MboII | GAAGA | 5 cut(s) | 56, 234, 237, 425, 721 |
| MhlI | GDGCHC | 2 cut(s) | 355, 498 |
| MlsI | TGGCCA | 1 cut(s) | 650 |
| MluCI | AATT | 4 cut(s) | 103, 117, 177, 436 |
| MluNI | TGGCCA | 1 cut(s) | 650 |
| MlyI | GAGTC | 2 cut(s) | 911, 971 |
| Mox20I | TGGCCA | 1 cut(s) | 650 |
| Mph1103I | ATGCAT | 3 cut(s) | 312, 316, 426 |
| MroI | TCCGGA | 1 cut(s) | 505 |
| MroNI | GCCGGC | 1 cut(s) | 914 |
| MroXI | GAANNNNTTC | 1 cut(s) | 455 |
| MscI | TGGCCA | 1 cut(s) | 650 |
| MseI | TTAA | 5 cut(s) | 102, 327, 477, 561, 759 |
| MslI | CAYNNNNRTG | 2 cut(s) | 425, 638 |
| Msp20I | TGGCCA | 1 cut(s) | 650 |
| MspCI | CTTAAG | 1 cut(s) | 560 |
| MspI | CCGG | 4 cut(s) | 506, 823, 915, 1027 |
| MspR9I | CCNGG | 1 cut(s) | 824 |
| MvnI | CGCG | 1 cut(s) | 912 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 553, 701, 854, 890 |
| NaeI | GCCGGC | 1 cut(s) | 916 |
| NciI | CCSGG | 1 cut(s) | 824 |
| NdeII | GATC | 2 cut(s) | 145, 829 |
| NgoMIV | GCCGGC | 1 cut(s) | 914 |
| NlaIV | GGNNCC | 1 cut(s) | 352 |
| NmuCI | GTSAC | 1 cut(s) | 903 |
| NsiI | ATGCAT | 3 cut(s) | 312, 316, 426 |
| NspI | RCATGY | 6 cut(s) | 310, 314, 424, 428, 725, 893 |
| PaeI | GCATGC | 4 cut(s) | 310, 314, 424, 893 |
| PdiI | GCCGGC | 1 cut(s) | 916 |
| PdmI | GAANNNNTTC | 1 cut(s) | 455 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 749 |
| PfoI | TCCNGGA | 1 cut(s) | 822 |
| PkrI | GCNGC | 2 cut(s) | 546, 850 |
| PleI | GAGTC | 2 cut(s) | 910, 970 |
| PpsI | GAGTC | 2 cut(s) | 910, 970 |
| PspFI | CCCAGC | 2 cut(s) | 487, 499 |
| PspN4I | GGNNCC | 1 cut(s) | 352 |
| PspPI | GGNCC | 1 cut(s) | 470 |
| RsaI | GTAC | 4 cut(s) | 291, 668, 876, 1053 |
| RsaNI | GTAC | 4 cut(s) | 290, 667, 875, 1052 |
| RseI | CAYNNNNRTG | 2 cut(s) | 425, 638 |
| SaqAI | TTAA | 5 cut(s) | 102, 327, 477, 561, 759 |
| SatI | GCNGC | 2 cut(s) | 545, 849 |
| Sau3AI | GATC | 2 cut(s) | 145, 829 |
| Sau96I | GGNCC | 1 cut(s) | 470 |
| SchI | GAGTC | 2 cut(s) | 911, 971 |
| ScrFI | CCNGG | 1 cut(s) | 824 |
| SduI | GDGCHC | 2 cut(s) | 355, 498 |
| SfaNI | GCATC | 2 cut(s) | 565, 617 |
| SinI | GGWCC | 1 cut(s) | 470 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 425, 638 |
| SmlI | CTYRAG | 1 cut(s) | 560 |
| SmoI | CTYRAG | 1 cut(s) | 560 |
| SphI | GCATGC | 4 cut(s) | 310, 314, 424, 893 |
| Sse9I | AATT | 4 cut(s) | 103, 117, 177, 436 |
| SsiI | CCGC | 3 cut(s) | 267, 468, 910 |
| SspMI | CTAG | 4 cut(s) | 249, 356, 858, 1057 |
| StyD4I | CCNGG | 1 cut(s) | 822 |
| TaaI | ACNGT | 1 cut(s) | 879 |
| TaiI | ACGT | 2 cut(s) | 291, 700 |
| TasI | AATT | 4 cut(s) | 103, 117, 177, 436 |
| TatI | WGTACW | 1 cut(s) | 874 |
| Tru1I | TTAA | 5 cut(s) | 102, 327, 477, 561, 759 |
| Tru9I | TTAA | 5 cut(s) | 102, 327, 477, 561, 759 |
| TscAI | CASTG | 3 cut(s) | 16, 392, 498 |
| TseFI | GTSAC | 1 cut(s) | 903 |
| TseI | GCWGC | 2 cut(s) | 544, 848 |
| Tsp45I | GTSAC | 1 cut(s) | 903 |
| TspDTI | ATGAA | 5 cut(s) | 57, 269, 612, 622, 656 |
| TspGWI | ACGGA | 2 cut(s) | 104, 233 |
| TspRI | CASTG | 3 cut(s) | 16, 392, 498 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 749 |
| Vha464I | CTTAAG | 1 cut(s) | 560 |
| VneI | GTGCAC | 1 cut(s) | 494 |
| VpaK11BI | GGWCC | 1 cut(s) | 470 |
| XapI | RAATTY | 2 cut(s) | 117, 177 |
| XceI | RCATGY | 6 cut(s) | 310, 314, 424, 428, 725, 893 |
| XmnI | GAANNNNTTC | 1 cut(s) | 455 |
| XspI | CTAG | 4 cut(s) | 249, 356, 858, 1057 |
| Zsp2I | ATGCAT | 3 cut(s) | 312, 316, 426 |