ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1227 |
| Acc65I | GGTACC | 2 cut(s) | 493, 729 |
| AccB1I | GGYRCC | 2 cut(s) | 493, 729 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 150, 353, 1340 |
| AccBSI | CCGCTC | 1 cut(s) | 6 |
| AccI | GTMKAC | 1 cut(s) | 1102 |
| AccII | CGCG | 2 cut(s) | 742, 867 |
| AciI | CCGC | 3 cut(s) | 6, 646, 922 |
| AclWI | GGATC | 2 cut(s) | 643, 656 |
| AcoI | YGGCCR | 1 cut(s) | 141 |
| AcsI | RAATTY | 2 cut(s) | 146, 1337 |
| AcuI | CTGAAG | 1 cut(s) | 590 |
| AcyI | GRCGYC | 2 cut(s) | 289, 1300 |
| AfaI | GTAC | 8 cut(s) | 213, 252, 495, 731, 745, 849, 1124, 1384 |
| AflIII | ACRYGT | 1 cut(s) | 1039 |
| AgsI | TTSAA | 4 cut(s) | 259, 430, 1030, 1252 |
| AjnI | CCWGG | 2 cut(s) | 1045, 1294 |
| Alw21I | GWGCWC | 3 cut(s) | 105, 1074, 1468 |
| Alw26I | GTCTC | 5 cut(s) | 296, 329, 901, 1307, 1365 |
| AlwI | GGATC | 2 cut(s) | 643, 656 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 752 |
| AoxI | GGCC | 2 cut(s) | 141, 1331 |
| ApeKI | GCWGC | 5 cut(s) | 93, 708, 749, 1282, 1285 |
| ApoI | RAATTY | 2 cut(s) | 146, 1337 |
| Asp718I | GGTACC | 2 cut(s) | 493, 729 |
| AspLEI | GCGC | 5 cut(s) | 444, 742, 867, 869, 1405 |
| AspS9I | GGNCC | 1 cut(s) | 1000 |
| AsuHPI | GGTGA | 2 cut(s) | 557, 1321 |
| AvaII | GGWCC | 1 cut(s) | 1000 |
| AxyI | CCTNAGG | 1 cut(s) | 843 |
| BalI | TGGCCA | 1 cut(s) | 143 |
| BamHI | GGATCC | 1 cut(s) | 648 |
| BanI | GGYRCC | 2 cut(s) | 493, 729 |
| BanII | GRGCYC | 2 cut(s) | 105, 1468 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 695, 727 |
| BauI | CACGAG | 1 cut(s) | 584 |
| BbsI | GAAGAC | 2 cut(s) | 26, 1265 |
| Bbv12I | GWGCWC | 3 cut(s) | 105, 1074, 1468 |
| BbvI | GCAGC | 5 cut(s) | 80, 695, 736, 1272, 1294 |
| BccI | CCATC | 6 cut(s) | 3, 452, 631, 956, 1135, 1313 |
| BciT130I | CCWGG | 2 cut(s) | 1047, 1296 |
| BcoDI | GTCTC | 5 cut(s) | 296, 329, 901, 1307, 1365 |
| BfaI | CTAG | 5 cut(s) | 434, 525, 765, 774, 906 |
| BisI | GCNGC | 5 cut(s) | 94, 709, 750, 1283, 1286 |
| BlpI | GCTNAGC | 1 cut(s) | 276 |
| BlsI | GCNGC | 5 cut(s) | 95, 710, 751, 1284, 1287 |
| Bme1390I | CCNGG | 2 cut(s) | 1047, 1296 |
| Bme18I | GGWCC | 1 cut(s) | 1000 |
| BmgT120I | GGNCC | 1 cut(s) | 1000 |
| BmiI | GGNNCC | 5 cut(s) | 375, 495, 650, 731, 1001 |
| BmrFI | CCNGG | 2 cut(s) | 1047, 1296 |
| BmrI | ACTGGG | 1 cut(s) | 1005 |
| BmsI | GCATC | 3 cut(s) | 117, 355, 779 |
| BmuI | ACTGGG | 1 cut(s) | 1005 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1265 |
| BpiI | GAAGAC | 2 cut(s) | 26, 1265 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 276 |
| BpuEI | CTTGAG | 1 cut(s) | 1289 |
| BsaAI | YACGTR | 1 cut(s) | 1106 |
| BsaHI | GRCGYC | 2 cut(s) | 289, 1300 |
| BsaI | GGTCTC | 1 cut(s) | 901 |
| BsaJI | CCNNGG | 2 cut(s) | 488, 1295 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1350, 1380 |
| Bse118I | RCCGGY | 1 cut(s) | 35 |
| Bse1I | ACTGG | 1 cut(s) | 1000 |
| Bse21I | CCTNAGG | 1 cut(s) | 843 |
| BseBI | CCWGG | 2 cut(s) | 1047, 1296 |
| BseDI | CCNNGG | 2 cut(s) | 488, 1295 |
| BseGI | GGATG | 7 cut(s) | 14, 175, 463, 967, 1090, 1146, 1324 |
| BseMII | CTCAG | 1 cut(s) | 1032 |
| BseNI | ACTGG | 1 cut(s) | 1000 |
| BsePI | GCGCGC | 1 cut(s) | 865 |
| BseRI | GAGGAG | 1 cut(s) | 415 |
| BseXI | GCAGC | 5 cut(s) | 80, 695, 736, 1272, 1294 |
| Bsh1236I | CGCG | 2 cut(s) | 742, 867 |
| Bsh1285I | CGRYCG | 1 cut(s) | 518 |
| BshFI | GGCC | 2 cut(s) | 143, 1333 |
| BshNI | GGYRCC | 2 cut(s) | 493, 729 |
| BsiEI | CGRYCG | 1 cut(s) | 518 |
| BsiHKAI | GWGCWC | 3 cut(s) | 105, 1074, 1468 |
| BsiSI | CCGG | 2 cut(s) | 36, 1461 |
| BslFI | GGGAC | 1 cut(s) | 1013 |
| BsmAI | GTCTC | 5 cut(s) | 296, 329, 901, 1307, 1365 |
| BsmBI | CGTCTC | 3 cut(s) | 296, 1307, 1365 |
| BsmFI | GGGAC | 1 cut(s) | 1013 |
| BsmI | GAATGC | 1 cut(s) | 834 |
| BsnI | GGCC | 2 cut(s) | 143, 1333 |
| Bso31I | GGTCTC | 1 cut(s) | 901 |
| Bsp1286I | GDGCHC | 3 cut(s) | 105, 1074, 1468 |
| Bsp143I | GATC | 2 cut(s) | 648, 803 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 276 |
| BspACI | CCGC | 3 cut(s) | 6, 646, 922 |
| BspANI | GGCC | 2 cut(s) | 143, 1333 |
| BspCNI | CTCAG | 1 cut(s) | 1031 |
| BspFNI | CGCG | 2 cut(s) | 742, 867 |
| BspHI | TCATGA | 1 cut(s) | 87 |
| BspLI | GGNNCC | 5 cut(s) | 375, 495, 650, 731, 1001 |
| BspPI | GGATC | 2 cut(s) | 643, 656 |
| BspQI | GCTCTTC | 1 cut(s) | 391 |
| BspT107I | GGYRCC | 2 cut(s) | 493, 729 |
| BspTNI | GGTCTC | 1 cut(s) | 901 |
| BsrBI | CCGCTC | 1 cut(s) | 6 |
| BsrFI | RCCGGY | 1 cut(s) | 35 |
| BsrI | ACTGG | 1 cut(s) | 1000 |
| BssAI | RCCGGY | 1 cut(s) | 35 |
| BssECI | CCNNGG | 2 cut(s) | 488, 1295 |
| BssHII | GCGCGC | 1 cut(s) | 865 |
| BssMI | GATC | 2 cut(s) | 648, 803 |
| BssNI | GRCGYC | 2 cut(s) | 289, 1300 |
| BssSI | CACGAG | 1 cut(s) | 584 |
| Bst2BI | CACGAG | 1 cut(s) | 584 |
| Bst2UI | CCWGG | 2 cut(s) | 1047, 1296 |
| Bst4CI | ACNGT | 2 cut(s) | 519, 718 |
| Bst6I | CTCTTC | 4 cut(s) | 216, 260, 391, 412 |
| BstACI | GRCGYC | 2 cut(s) | 289, 1300 |
| BstBAI | YACGTR | 1 cut(s) | 1106 |
| BstC8I | GCNNGC | 6 cut(s) | 192, 828, 832, 867, 1174, 1186 |
| BstDEI | CTNAG | 7 cut(s) | 276, 361, 656, 843, 891, 1013, 1018 |
| BstDSI | CCRYGG | 1 cut(s) | 488 |
| BstF5I | GGATG | 7 cut(s) | 14, 175, 463, 967, 1090, 1146, 1324 |
| BstFNI | CGCG | 2 cut(s) | 742, 867 |
| BstHHI | GCGC | 5 cut(s) | 444, 742, 867, 869, 1405 |
| BstKTI | GATC | 2 cut(s) | 651, 806 |
| BstMAI | GTCTC | 5 cut(s) | 296, 329, 901, 1307, 1365 |
| BstMBI | GATC | 2 cut(s) | 648, 803 |
| BstMCI | CGRYCG | 1 cut(s) | 518 |
| BstNI | CCWGG | 2 cut(s) | 1047, 1296 |
| BstNSI | RCATGY | 4 cut(s) | 830, 1043, 1176, 1188 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1265 |
| BstSCI | CCNGG | 2 cut(s) | 1045, 1294 |
| BstUI | CGCG | 2 cut(s) | 742, 867 |
| BstV1I | GCAGC | 5 cut(s) | 80, 695, 736, 1272, 1294 |
| BstV2I | GAAGAC | 2 cut(s) | 26, 1265 |
| BstX2I | RGATCY | 1 cut(s) | 648 |
| BstYI | RGATCY | 1 cut(s) | 648 |
| Bsu36I | CCTNAGG | 1 cut(s) | 843 |
| BsuRI | GGCC | 2 cut(s) | 143, 1333 |
| BtgI | CCRYGG | 1 cut(s) | 488 |
| BtsCI | GGATG | 7 cut(s) | 14, 175, 463, 967, 1090, 1146, 1324 |
| BtsIMutI | CAGTG | 3 cut(s) | 714, 993, 1026 |
| Cac8I | GCNNGC | 6 cut(s) | 192, 828, 832, 867, 1174, 1186 |
| CaiI | CAGNNNCTG | 1 cut(s) | 752 |
| CciI | TCATGA | 1 cut(s) | 87 |
| CfoI | GCGC | 5 cut(s) | 444, 742, 867, 869, 1405 |
| Cfr10I | RCCGGY | 1 cut(s) | 35 |
| Cfr13I | GGNCC | 1 cut(s) | 1000 |
| CseI | GACGC | 2 cut(s) | 278, 1289 |
| Csp6I | GTAC | 8 cut(s) | 212, 251, 494, 730, 744, 848, 1123, 1383 |
| CviQI | GTAC | 8 cut(s) | 212, 251, 494, 730, 744, 848, 1123, 1383 |
| DdeI | CTNAG | 7 cut(s) | 276, 361, 656, 843, 891, 1013, 1018 |
| DpnI | GATC | 2 cut(s) | 650, 805 |
| DpnII | GATC | 2 cut(s) | 648, 803 |
| DraI | TTTAAA | 1 cut(s) | 331 |
| EaeI | YGGCCR | 1 cut(s) | 141 |
| Eam1104I | CTCTTC | 4 cut(s) | 216, 260, 391, 412 |
| EarI | CTCTTC | 4 cut(s) | 216, 260, 391, 412 |
| EciI | GGCGGA | 1 cut(s) | 661 |
| Ecl136II | GAGCTC | 2 cut(s) | 103, 1466 |
| Eco24I | GRGCYC | 2 cut(s) | 105, 1468 |
| Eco31I | GGTCTC | 1 cut(s) | 901 |
| Eco47I | GGWCC | 1 cut(s) | 1000 |
| Eco53kI | GAGCTC | 2 cut(s) | 103, 1466 |
| Eco57I | CTGAAG | 1 cut(s) | 590 |
| Eco81I | CCTNAGG | 1 cut(s) | 843 |
| EcoICRI | GAGCTC | 2 cut(s) | 103, 1466 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1000 |
| EcoRII | CCWGG | 2 cut(s) | 1045, 1294 |
| EcoT22I | ATGCAT | 2 cut(s) | 132, 1186 |
| EcoT38I | GRGCYC | 2 cut(s) | 105, 1468 |
| Esp3I | CGTCTC | 3 cut(s) | 296, 1307, 1365 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 255, 287 |
| FaqI | GGGAC | 1 cut(s) | 1013 |
| FauNDI | CATATG | 1 cut(s) | 1437 |
| FblI | GTMKAC | 1 cut(s) | 1102 |
| Fnu4HI | GCNGC | 5 cut(s) | 94, 709, 750, 1283, 1286 |
| FokI | GGATG | 7 cut(s) | 21, 182, 470, 974, 1097, 1153, 1331 |
| FriOI | GRGCYC | 2 cut(s) | 105, 1468 |
| Fsp4HI | GCNGC | 5 cut(s) | 94, 709, 750, 1283, 1286 |
| FspBI | CTAG | 5 cut(s) | 434, 525, 765, 774, 906 |
| GlaI | GCGC | 5 cut(s) | 443, 741, 866, 868, 1404 |
| GluI | GCNGC | 5 cut(s) | 94, 709, 750, 1283, 1286 |
| HaeIII | GGCC | 2 cut(s) | 143, 1333 |
| HapII | CCGG | 2 cut(s) | 36, 1461 |
| HgaI | GACGC | 2 cut(s) | 278, 1289 |
| HhaI | GCGC | 5 cut(s) | 444, 742, 867, 869, 1405 |
| Hin1I | GRCGYC | 2 cut(s) | 289, 1300 |
| Hin6I | GCGC | 5 cut(s) | 442, 740, 865, 867, 1403 |
| HinP1I | GCGC | 5 cut(s) | 442, 740, 865, 867, 1403 |
| HindIII | AAGCTT | 3 cut(s) | 203, 264, 1232 |
| HinfI | GANTC | 6 cut(s) | 181, 301, 668, 761, 795, 1266 |
| HpaII | CCGG | 2 cut(s) | 36, 1461 |
| HphI | GGTGA | 2 cut(s) | 557, 1321 |
| Hpy166II | GTNNAC | 3 cut(s) | 212, 522, 1103 |
| Hpy188I | TCNGA | 5 cut(s) | 378, 484, 628, 673, 1370 |
| Hpy188III | TCNNGA | 2 cut(s) | 88, 1138 |
| Hpy8I | GTNNAC | 3 cut(s) | 212, 522, 1103 |
| HpyAV | CCTTC | 4 cut(s) | 364, 456, 697, 808 |
| HpyCH4III | ACNGT | 2 cut(s) | 519, 718 |
| HpyCH4IV | ACGT | 3 cut(s) | 850, 1105, 1191 |
| HpyF3I | CTNAG | 7 cut(s) | 276, 361, 656, 843, 891, 1013, 1018 |
| HpySE526I | ACGT | 3 cut(s) | 850, 1105, 1191 |
| Hsp92I | GRCGYC | 2 cut(s) | 289, 1300 |
| HspAI | GCGC | 5 cut(s) | 442, 740, 865, 867, 1403 |
| KpnI | GGTACC | 2 cut(s) | 497, 733 |
| Kzo9I | GATC | 2 cut(s) | 648, 803 |
| LguI | GCTCTTC | 1 cut(s) | 391 |
| LmnI | GCTCC | 2 cut(s) | 108, 1463 |
| Lsp1109I | GCAGC | 5 cut(s) | 80, 695, 736, 1272, 1294 |
| LweI | GCATC | 3 cut(s) | 117, 355, 779 |
| MaeI | CTAG | 5 cut(s) | 434, 525, 765, 774, 906 |
| MaeII | ACGT | 3 cut(s) | 850, 1105, 1191 |
| MaeIII | GTNAC | 3 cut(s) | 545, 991, 1325 |
| MalI | GATC | 2 cut(s) | 650, 805 |
| MbiI | CCGCTC | 1 cut(s) | 6 |
| MboI | GATC | 2 cut(s) | 648, 803 |
| MfeI | CAATTG | 1 cut(s) | 1153 |
| MflI | RGATCY | 1 cut(s) | 648 |
| MhlI | GDGCHC | 3 cut(s) | 105, 1074, 1468 |
| MlsI | TGGCCA | 1 cut(s) | 143 |
| MluNI | TGGCCA | 1 cut(s) | 143 |
| MlyI | GAGTC | 3 cut(s) | 677, 804, 1275 |
| MmeI | TCCRAC | 1 cut(s) | 651 |
| Mox20I | TGGCCA | 1 cut(s) | 143 |
| Mph1103I | ATGCAT | 2 cut(s) | 132, 1186 |
| MscI | TGGCCA | 1 cut(s) | 143 |
| MseI | TTAA | 4 cut(s) | 54, 330, 1179, 1217 |
| Msp20I | TGGCCA | 1 cut(s) | 143 |
| MspA1I | CMGCKG | 2 cut(s) | 749, 1285 |
| MspI | CCGG | 2 cut(s) | 36, 1461 |
| MspR9I | CCNGG | 2 cut(s) | 1047, 1296 |
| MunI | CAATTG | 1 cut(s) | 1153 |
| Mva1269I | GAATGC | 1 cut(s) | 834 |
| MvaI | CCWGG | 2 cut(s) | 1047, 1296 |
| MvnI | CGCG | 2 cut(s) | 742, 867 |
| NdeI | CATATG | 1 cut(s) | 1437 |
| NdeII | GATC | 2 cut(s) | 648, 803 |
| NlaIV | GGNNCC | 5 cut(s) | 375, 495, 650, 731, 1001 |
| NmuCI | GTSAC | 2 cut(s) | 545, 991 |
| NsiI | ATGCAT | 2 cut(s) | 132, 1186 |
| NspI | RCATGY | 4 cut(s) | 830, 1043, 1176, 1188 |
| PaeI | GCATGC | 3 cut(s) | 830, 1176, 1188 |
| PagI | TCATGA | 1 cut(s) | 87 |
| PauI | GCGCGC | 1 cut(s) | 865 |
| PciI | ACATGT | 1 cut(s) | 1039 |
| PciSI | GCTCTTC | 1 cut(s) | 391 |
| PctI | GAATGC | 1 cut(s) | 834 |
| PfeI | GAWTC | 3 cut(s) | 181, 301, 761 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 150, 353, 1340 |
| PfoI | TCCNGGA | 1 cut(s) | 1045 |
| PkrI | GCNGC | 5 cut(s) | 95, 710, 751, 1284, 1287 |
| PleI | GAGTC | 3 cut(s) | 676, 803, 1274 |
| PpsI | GAGTC | 3 cut(s) | 676, 803, 1274 |
| Ppu21I | YACGTR | 1 cut(s) | 1106 |
| PpuMI | RGGWCCY | 1 cut(s) | 1000 |
| PscI | ACATGT | 1 cut(s) | 1039 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1265 |
| PsiI | TTATAA | 1 cut(s) | 1227 |
| Psp124BI | GAGCTC | 2 cut(s) | 105, 1468 |
| Psp5II | RGGWCCY | 1 cut(s) | 1000 |
| Psp6I | CCWGG | 2 cut(s) | 1045, 1294 |
| PspGI | CCWGG | 2 cut(s) | 1045, 1294 |
| PspN4I | GGNNCC | 5 cut(s) | 375, 495, 650, 731, 1001 |
| PspPI | GGNCC | 1 cut(s) | 1000 |
| PspPPI | RGGWCCY | 1 cut(s) | 1000 |
| PstNI | CAGNNNCTG | 1 cut(s) | 752 |
| PsuI | RGATCY | 1 cut(s) | 648 |
| PteI | GCGCGC | 1 cut(s) | 865 |
| PvuII | CAGCTG | 2 cut(s) | 749, 1285 |
| RsaI | GTAC | 8 cut(s) | 213, 252, 495, 731, 745, 849, 1124, 1384 |
| RsaNI | GTAC | 8 cut(s) | 212, 251, 494, 730, 744, 848, 1123, 1383 |
| SacI | GAGCTC | 2 cut(s) | 105, 1468 |
| SapI | GCTCTTC | 1 cut(s) | 391 |
| SaqAI | TTAA | 4 cut(s) | 54, 330, 1179, 1217 |
| SatI | GCNGC | 5 cut(s) | 94, 709, 750, 1283, 1286 |
| Sau3AI | GATC | 2 cut(s) | 648, 803 |
| Sau96I | GGNCC | 1 cut(s) | 1000 |
| SchI | GAGTC | 3 cut(s) | 677, 804, 1275 |
| ScrFI | CCNGG | 2 cut(s) | 1047, 1296 |
| SduI | GDGCHC | 3 cut(s) | 105, 1074, 1468 |
| SfaNI | GCATC | 3 cut(s) | 117, 355, 779 |
| SinI | GGWCC | 1 cut(s) | 1000 |
| SmlI | CTYRAG | 1 cut(s) | 1304 |
| SmoI | CTYRAG | 1 cut(s) | 1304 |
| SphI | GCATGC | 3 cut(s) | 830, 1176, 1188 |
| SsiI | CCGC | 3 cut(s) | 6, 646, 922 |
| SspI | AATATT | 1 cut(s) | 469 |
| SspMI | CTAG | 5 cut(s) | 434, 525, 765, 774, 906 |
| SstI | GAGCTC | 2 cut(s) | 105, 1468 |
| StyD4I | CCNGG | 2 cut(s) | 1045, 1294 |
| TaaI | ACNGT | 2 cut(s) | 519, 718 |
| TaiI | ACGT | 3 cut(s) | 853, 1108, 1194 |
| TaqI | TCGA | 2 cut(s) | 514, 1456 |
| TfiI | GAWTC | 3 cut(s) | 181, 301, 761 |
| Tru1I | TTAA | 4 cut(s) | 54, 330, 1179, 1217 |
| Tru9I | TTAA | 4 cut(s) | 54, 330, 1179, 1217 |
| TscAI | CASTG | 3 cut(s) | 721, 1000, 1026 |
| TseFI | GTSAC | 2 cut(s) | 545, 991 |
| TseI | GCWGC | 5 cut(s) | 93, 708, 749, 1282, 1285 |
| Tsp45I | GTSAC | 2 cut(s) | 545, 991 |
| TspDTI | ATGAA | 6 cut(s) | 173, 186, 401, 944, 1108, 1226 |
| TspRI | CASTG | 3 cut(s) | 721, 1000, 1026 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 150, 353, 1340 |
| VpaK11BI | GGWCC | 1 cut(s) | 1000 |
| XapI | RAATTY | 2 cut(s) | 146, 1337 |
| XceI | RCATGY | 4 cut(s) | 830, 1043, 1176, 1188 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 455 |
| XmiI | GTMKAC | 1 cut(s) | 1102 |
| XspI | CTAG | 5 cut(s) | 434, 525, 765, 774, 906 |
| Zsp2I | ATGCAT | 2 cut(s) | 132, 1186 |