Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 33 - 100 | 8.8e-10 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 194, 751 |
| Acc36I | ACCTGC | 2 cut(s) | 194, 751 |
| AccIII | TCCGGA | 1 cut(s) | 742 |
| AciI | CCGC | 3 cut(s) | 77, 365, 614 |
| AclWI | GGATC | 9 cut(s) | 40, 49, 79, 187, 412, 425, 442, 455, 1078 |
| AcoI | YGGCCR | 1 cut(s) | 27 |
| AcsI | RAATTY | 1 cut(s) | 470 |
| AcuI | CTGAAG | 1 cut(s) | 909 |
| AfaI | GTAC | 2 cut(s) | 101, 852 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 400, 586, 633, 749, 1093 |
| AgeI | ACCGGT | 1 cut(s) | 322 |
| AgsI | TTSAA | 3 cut(s) | 470, 551, 829 |
| AjiI | CACGTC | 2 cut(s) | 357, 664 |
| AjnI | CCWGG | 1 cut(s) | 139 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 31 |
| AluBI | AGCT | 2 cut(s) | 131, 1046 |
| AluI | AGCT | 2 cut(s) | 131, 1046 |
| Alw26I | GTCTC | 1 cut(s) | 347 |
| AlwI | GGATC | 9 cut(s) | 40, 49, 79, 187, 412, 425, 442, 455, 1078 |
| Ama87I | CYCGRG | 2 cut(s) | 48, 491 |
| Aor13HI | TCCGGA | 1 cut(s) | 742 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApeKI | GCWGC | 8 cut(s) | 604, 620, 623, 674, 677, 697, 952, 1058 |
| ApoI | RAATTY | 1 cut(s) | 470 |
| AsiGI | ACCGGT | 1 cut(s) | 322 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 250 |
| AspS9I | GGNCC | 4 cut(s) | 62, 122, 266, 320 |
| AsuC2I | CCSGG | 1 cut(s) | 422 |
| AsuHPI | GGTGA | 5 cut(s) | 218, 436, 745, 775, 1093 |
| AvaI | CYCGRG | 2 cut(s) | 48, 491 |
| AvaII | GGWCC | 4 cut(s) | 62, 122, 266, 320 |
| BamHI | GGATCC | 2 cut(s) | 417, 447 |
| BanII | GRGCYC | 1 cut(s) | 671 |
| BbsI | GAAGAC | 1 cut(s) | 107 |
| BbvI | GCAGC | 8 cut(s) | 591, 607, 610, 661, 664, 684, 964, 1045 |
| BccI | CCATC | 8 cut(s) | 305, 457, 566, 652, 730, 934, 988, 1091 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 277, 311, 679, 713, 1040, 1074 |
| BciT130I | CCWGG | 1 cut(s) | 141 |
| BciVI | GTATCC | 1 cut(s) | 427 |
| BclI | TGATCA | 2 cut(s) | 208, 379 |
| BcnI | CCSGG | 1 cut(s) | 422 |
| BcoDI | GTCTC | 1 cut(s) | 347 |
| BfaI | CTAG | 1 cut(s) | 581 |
| BfmI | CTRYAG | 6 cut(s) | 83, 277, 605, 698, 758, 1059 |
| BfuAI | ACCTGC | 2 cut(s) | 194, 751 |
| BfuI | GTATCC | 1 cut(s) | 427 |
| Bme1390I | CCNGG | 2 cut(s) | 141, 422 |
| Bme18I | GGWCC | 4 cut(s) | 62, 122, 266, 320 |
| BmeT110I | CYCGRG | 2 cut(s) | 48, 491 |
| BmgBI | CACGTC | 2 cut(s) | 357, 664 |
| BmgT120I | GGNCC | 4 cut(s) | 62, 122, 266, 320 |
| BmiI | GGNNCC | 5 cut(s) | 267, 419, 449, 741, 1131 |
| BmrFI | CCNGG | 2 cut(s) | 141, 422 |
| BmsI | GCATC | 5 cut(s) | 190, 279, 771, 815, 923 |
| BpiI | GAAGAC | 1 cut(s) | 107 |
| BpmI | CTGGAG | 3 cut(s) | 371, 665, 1010 |
| BpuMI | CCSGG | 1 cut(s) | 422 |
| BsaJI | CCNNGG | 3 cut(s) | 259, 269, 627 |
| BsaWI | WCCGGW | 2 cut(s) | 322, 742 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 400, 586, 633, 749, 1093 |
| Bse118I | RCCGGY | 2 cut(s) | 322, 616 |
| Bse1I | ACTGG | 3 cut(s) | 101, 223, 993 |
| Bse3DI | GCAATG | 1 cut(s) | 947 |
| BseAI | TCCGGA | 1 cut(s) | 742 |
| BseBI | CCWGG | 1 cut(s) | 141 |
| BseDI | CCNNGG | 3 cut(s) | 259, 269, 627 |
| BseGI | GGATG | 8 cut(s) | 94, 465, 498, 663, 786, 802, 926, 1102 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 400, 586, 633, 749, 1093 |
| BseMI | GCAATG | 1 cut(s) | 947 |
| BseNI | ACTGG | 3 cut(s) | 101, 223, 993 |
| BseRI | GAGGAG | 6 cut(s) | 419, 422, 611, 833, 836, 1013 |
| BseXI | GCAGC | 8 cut(s) | 591, 607, 610, 661, 664, 684, 964, 1045 |
| BseYI | CCCAGC | 2 cut(s) | 298, 632 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BshTI | ACCGGT | 1 cut(s) | 322 |
| BsiHKCI | CYCGRG | 2 cut(s) | 48, 491 |
| BsiSI | CCGG | 7 cut(s) | 30, 65, 323, 421, 445, 617, 743 |
| BslFI | GGGAC | 2 cut(s) | 279, 548 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 400, 586, 633, 749, 1093 |
| BsmAI | GTCTC | 1 cut(s) | 347 |
| BsmBI | CGTCTC | 1 cut(s) | 347 |
| BsmFI | GGGAC | 2 cut(s) | 279, 548 |
| BsmI | GAATGC | 1 cut(s) | 847 |
| BsnI | GGCC | 1 cut(s) | 29 |
| BsoBI | CYCGRG | 2 cut(s) | 48, 491 |
| Bsp1286I | GDGCHC | 1 cut(s) | 671 |
| Bsp13I | TCCGGA | 1 cut(s) | 742 |
| Bsp19I | CCATGG | 2 cut(s) | 259, 627 |
| BspACI | CCGC | 3 cut(s) | 77, 365, 614 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspEI | TCCGGA | 1 cut(s) | 742 |
| BspLI | GGNNCC | 5 cut(s) | 267, 419, 449, 741, 1131 |
| BspMAI | CTGCAG | 5 cut(s) | 87, 609, 702, 762, 1063 |
| BspMI | ACCTGC | 2 cut(s) | 194, 751 |
| BspPI | GGATC | 9 cut(s) | 40, 49, 79, 187, 412, 425, 442, 455, 1078 |
| BsrDI | GCAATG | 1 cut(s) | 947 |
| BsrFI | RCCGGY | 2 cut(s) | 322, 616 |
| BsrI | ACTGG | 3 cut(s) | 101, 223, 993 |
| BssAI | RCCGGY | 2 cut(s) | 322, 616 |
| BssECI | CCNNGG | 3 cut(s) | 259, 269, 627 |
| BssT1I | CCWWGG | 2 cut(s) | 259, 627 |
| Bst2UI | CCWGG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 5 cut(s) | 270, 342, 484, 539, 1081 |
| Bst6I | CTCTTC | 3 cut(s) | 19, 166, 1022 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 781 |
| BstC8I | GCNNGC | 4 cut(s) | 133, 618, 957, 1048 |
| BstDEI | CTNAG | 1 cut(s) | 969 |
| BstDSI | CCRYGG | 3 cut(s) | 259, 269, 627 |
| BstEII | GGTNACC | 1 cut(s) | 763 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 584 |
| BstF5I | GGATG | 8 cut(s) | 94, 465, 498, 663, 786, 802, 926, 1102 |
| BstMAI | GTCTC | 1 cut(s) | 347 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 74, 610, 613, 629, 686, 781, 1067 |
| BstNI | CCWGG | 1 cut(s) | 141 |
| BstNSI | RCATGY | 1 cut(s) | 1007 |
| BstPI | GGTNACC | 1 cut(s) | 763 |
| BstSCI | CCNGG | 2 cut(s) | 139, 420 |
| BstSFI | CTRYAG | 6 cut(s) | 83, 277, 605, 698, 758, 1059 |
| BstV1I | GCAGC | 8 cut(s) | 591, 607, 610, 661, 664, 684, 964, 1045 |
| BstV2I | GAAGAC | 1 cut(s) | 107 |
| BstX2I | RGATCY | 4 cut(s) | 32, 41, 417, 447 |
| BstYI | RGATCY | 4 cut(s) | 32, 41, 417, 447 |
| BsuI | GTATCC | 1 cut(s) | 427 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtgI | CCRYGG | 3 cut(s) | 259, 269, 627 |
| BtrI | CACGTC | 2 cut(s) | 357, 664 |
| BtsCI | GGATG | 8 cut(s) | 94, 465, 498, 663, 786, 802, 926, 1102 |
| BtsI | GCAGTG | 1 cut(s) | 80 |
| BtsIMutI | CAGTG | 4 cut(s) | 80, 94, 338, 480 |
| BveI | ACCTGC | 2 cut(s) | 194, 751 |
| Cac8I | GCNNGC | 4 cut(s) | 133, 618, 957, 1048 |
| Cfr10I | RCCGGY | 2 cut(s) | 322, 616 |
| Cfr13I | GGNCC | 4 cut(s) | 62, 122, 266, 320 |
| CseI | GACGC | 1 cut(s) | 948 |
| Csp6I | GTAC | 2 cut(s) | 100, 851 |
| CspAI | ACCGGT | 1 cut(s) | 322 |
| CviQI | GTAC | 2 cut(s) | 100, 851 |
| DdeI | CTNAG | 1 cut(s) | 969 |
| DraI | TTTAAA | 1 cut(s) | 148 |
| EaeI | YGGCCR | 1 cut(s) | 27 |
| Eam1104I | CTCTTC | 3 cut(s) | 19, 166, 1022 |
| EarI | CTCTTC | 3 cut(s) | 19, 166, 1022 |
| Eco130I | CCWWGG | 2 cut(s) | 259, 627 |
| Eco24I | GRGCYC | 1 cut(s) | 671 |
| Eco32I | GATATC | 1 cut(s) | 945 |
| Eco47I | GGWCC | 4 cut(s) | 62, 122, 266, 320 |
| Eco57I | CTGAAG | 1 cut(s) | 909 |
| Eco88I | CYCGRG | 2 cut(s) | 48, 491 |
| Eco91I | GGTNACC | 1 cut(s) | 763 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 584 |
| EcoO65I | GGTNACC | 1 cut(s) | 763 |
| EcoRII | CCWGG | 1 cut(s) | 139 |
| EcoRV | GATATC | 1 cut(s) | 945 |
| EcoT14I | CCWWGG | 2 cut(s) | 259, 627 |
| EcoT22I | ATGCAT | 1 cut(s) | 808 |
| EcoT38I | GRGCYC | 1 cut(s) | 671 |
| ErhI | CCWWGG | 2 cut(s) | 259, 627 |
| Esp3I | CGTCTC | 1 cut(s) | 347 |
| FaqI | GGGAC | 2 cut(s) | 279, 548 |
| FbaI | TGATCA | 2 cut(s) | 208, 379 |
| FokI | GGATG | 8 cut(s) | 101, 472, 485, 670, 793, 809, 913, 1109 |
| FriOI | GRGCYC | 1 cut(s) | 671 |
| FspBI | CTAG | 1 cut(s) | 581 |
| GsaI | CCCAGC | 2 cut(s) | 302, 636 |
| GsuI | CTGGAG | 3 cut(s) | 371, 665, 1010 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HapII | CCGG | 7 cut(s) | 30, 65, 323, 421, 445, 617, 743 |
| HgaI | GACGC | 1 cut(s) | 948 |
| HincII | GTYRAC | 1 cut(s) | 885 |
| HindII | GTYRAC | 1 cut(s) | 885 |
| HinfI | GANTC | 5 cut(s) | 174, 346, 649, 964, 1030 |
| HpaII | CCGG | 7 cut(s) | 30, 65, 323, 421, 445, 617, 743 |
| HphI | GGTGA | 5 cut(s) | 218, 436, 745, 775, 1093 |
| Hpy166II | GTNNAC | 3 cut(s) | 480, 755, 885 |
| Hpy188I | TCNGA | 2 cut(s) | 122, 1035 |
| Hpy188III | TCNNGA | 5 cut(s) | 350, 493, 502, 511, 743 |
| Hpy8I | GTNNAC | 3 cut(s) | 480, 755, 885 |
| Hpy99I | CGWCG | 3 cut(s) | 399, 444, 964 |
| HpyAV | CCTTC | 8 cut(s) | 393, 514, 580, 697, 862, 1106, 1118, 1148 |
| HpyCH4III | ACNGT | 5 cut(s) | 270, 342, 484, 539, 1081 |
| HpyCH4IV | ACGT | 2 cut(s) | 356, 663 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 74, 610, 613, 629, 686, 781, 1067 |
| HpyF3I | CTNAG | 1 cut(s) | 969 |
| HpySE526I | ACGT | 2 cut(s) | 356, 663 |
| Kpn2I | TCCGGA | 1 cut(s) | 742 |
| KroI | GCCGGC | 1 cut(s) | 616 |
| KroNI | GCCGGC | 1 cut(s) | 618 |
| Ksp22I | TGATCA | 2 cut(s) | 208, 379 |
| LmnI | GCTCC | 3 cut(s) | 409, 745, 1000 |
| Lsp1109I | GCAGC | 8 cut(s) | 591, 607, 610, 661, 664, 684, 964, 1045 |
| LweI | GCATC | 5 cut(s) | 190, 279, 771, 815, 923 |
| MaeI | CTAG | 1 cut(s) | 581 |
| MaeII | ACGT | 2 cut(s) | 356, 663 |
| MaeIII | GTNAC | 1 cut(s) | 763 |
| MboII | GAAGA | 6 cut(s) | 6, 107, 153, 985, 1021, 1039 |
| MflI | RGATCY | 4 cut(s) | 32, 41, 417, 447 |
| MhlI | GDGCHC | 1 cut(s) | 671 |
| MluCI | AATT | 5 cut(s) | 470, 770, 895, 907, 1091 |
| MlyI | GAGTC | 2 cut(s) | 355, 1039 |
| MmeI | TCCRAC | 1 cut(s) | 298 |
| Mph1103I | ATGCAT | 1 cut(s) | 808 |
| MroI | TCCGGA | 1 cut(s) | 742 |
| MroNI | GCCGGC | 1 cut(s) | 616 |
| MroXI | GAANNNNTTC | 1 cut(s) | 250 |
| MseI | TTAA | 4 cut(s) | 147, 894, 903, 1159 |
| MslI | CAYNNNNRTG | 1 cut(s) | 935 |
| MspI | CCGG | 7 cut(s) | 30, 65, 323, 421, 445, 617, 743 |
| MspR9I | CCNGG | 2 cut(s) | 141, 422 |
| Mva1269I | GAATGC | 1 cut(s) | 847 |
| MvaI | CCWGG | 1 cut(s) | 141 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 74, 610, 613, 629, 686, 781, 1067 |
| NaeI | GCCGGC | 1 cut(s) | 618 |
| NciI | CCSGG | 1 cut(s) | 422 |
| NcoI | CCATGG | 2 cut(s) | 259, 627 |
| NgoMIV | GCCGGC | 1 cut(s) | 616 |
| NlaIV | GGNNCC | 5 cut(s) | 267, 419, 449, 741, 1131 |
| NmuCI | GTSAC | 1 cut(s) | 763 |
| NsiI | ATGCAT | 1 cut(s) | 808 |
| NspI | RCATGY | 1 cut(s) | 1007 |
| PaeR7I | CTCGAG | 1 cut(s) | 491 |
| PaqCI | CACCTGC | 2 cut(s) | 194, 751 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 188, 448 |
| PctI | GAATGC | 1 cut(s) | 847 |
| PdiI | GCCGGC | 1 cut(s) | 618 |
| PdmI | GAANNNNTTC | 1 cut(s) | 250 |
| PfeI | GAWTC | 3 cut(s) | 174, 649, 964 |
| PinAI | ACCGGT | 1 cut(s) | 322 |
| PleI | GAGTC | 2 cut(s) | 354, 1038 |
| PpsI | GAGTC | 2 cut(s) | 354, 1038 |
| Psp6I | CCWGG | 1 cut(s) | 139 |
| PspEI | GGTNACC | 1 cut(s) | 763 |
| PspFI | CCCAGC | 2 cut(s) | 298, 632 |
| PspGI | CCWGG | 1 cut(s) | 139 |
| PspN4I | GGNNCC | 5 cut(s) | 267, 419, 449, 741, 1131 |
| PspPI | GGNCC | 4 cut(s) | 62, 122, 266, 320 |
| PstI | CTGCAG | 5 cut(s) | 87, 609, 702, 762, 1063 |
| PsuI | RGATCY | 4 cut(s) | 32, 41, 417, 447 |
| RsaI | GTAC | 2 cut(s) | 101, 852 |
| RsaNI | GTAC | 2 cut(s) | 100, 851 |
| RseI | CAYNNNNRTG | 1 cut(s) | 935 |
| SaqAI | TTAA | 4 cut(s) | 147, 894, 903, 1159 |
| Sau96I | GGNCC | 4 cut(s) | 62, 122, 266, 320 |
| SchI | GAGTC | 2 cut(s) | 355, 1039 |
| ScrFI | CCNGG | 2 cut(s) | 141, 422 |
| SduI | GDGCHC | 1 cut(s) | 671 |
| SfaNI | GCATC | 5 cut(s) | 190, 279, 771, 815, 923 |
| SfcI | CTRYAG | 6 cut(s) | 83, 277, 605, 698, 758, 1059 |
| Sfr274I | CTCGAG | 1 cut(s) | 491 |
| SinI | GGWCC | 4 cut(s) | 62, 122, 266, 320 |
| SlaI | CTCGAG | 1 cut(s) | 491 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 935 |
| SmlI | CTYRAG | 1 cut(s) | 491 |
| SmoI | CTYRAG | 1 cut(s) | 491 |
| Sse9I | AATT | 5 cut(s) | 470, 770, 895, 907, 1091 |
| SsiI | CCGC | 3 cut(s) | 77, 365, 614 |
| SspMI | CTAG | 1 cut(s) | 581 |
| StyD4I | CCNGG | 2 cut(s) | 139, 420 |
| StyI | CCWWGG | 2 cut(s) | 259, 627 |
| TaaI | ACNGT | 5 cut(s) | 270, 342, 484, 539, 1081 |
| TaiI | ACGT | 2 cut(s) | 359, 666 |
| TaqI | TCGA | 4 cut(s) | 397, 492, 510, 962 |
| TaqII | GACCGA | 1 cut(s) | 782 |
| TasI | AATT | 5 cut(s) | 470, 770, 895, 907, 1091 |
| TauI | GCSGC | 2 cut(s) | 80, 616 |
| TfiI | GAWTC | 3 cut(s) | 174, 649, 964 |
| Tru1I | TTAA | 4 cut(s) | 147, 894, 903, 1159 |
| Tru9I | TTAA | 4 cut(s) | 147, 894, 903, 1159 |
| TscAI | CASTG | 4 cut(s) | 87, 101, 345, 487 |
| TseFI | GTSAC | 1 cut(s) | 763 |
| TseI | GCWGC | 8 cut(s) | 604, 620, 623, 674, 677, 697, 952, 1058 |
| Tsp45I | GTSAC | 1 cut(s) | 763 |
| TspDTI | ATGAA | 3 cut(s) | 444, 854, 993 |
| TspGWI | ACGGA | 2 cut(s) | 383, 440 |
| TspRI | CASTG | 4 cut(s) | 87, 101, 345, 487 |
| VpaK11BI | GGWCC | 4 cut(s) | 62, 122, 266, 320 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 584 |
| XapI | RAATTY | 1 cut(s) | 470 |
| XceI | RCATGY | 1 cut(s) | 1007 |
| XhoI | CTCGAG | 1 cut(s) | 491 |
| XmnI | GAANNNNTTC | 1 cut(s) | 250 |
| XspI | CTAG | 1 cut(s) | 581 |
| Zsp2I | ATGCAT | 1 cut(s) | 808 |