Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 858 |
| Acc36I | ACCTGC | 1 cut(s) | 791 |
| AccI | GTMKAC | 2 cut(s) | 107, 826 |
| AciI | CCGC | 2 cut(s) | 546, 581 |
| AcoI | YGGCCR | 2 cut(s) | 39, 378 |
| AdeI | CACNNNGTG | 1 cut(s) | 127 |
| AfaI | GTAC | 2 cut(s) | 120, 935 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 34, 440, 479, 480, 481, 536 |
| AgeI | ACCGGT | 1 cut(s) | 110 |
| AgsI | TTSAA | 4 cut(s) | 158, 413, 493, 499 |
| AjnI | CCWGG | 1 cut(s) | 918 |
| AluBI | AGCT | 7 cut(s) | 143, 295, 366, 392, 631, 722, 845 |
| AluI | AGCT | 7 cut(s) | 143, 295, 366, 392, 631, 722, 845 |
| Ama87I | CYCGRG | 1 cut(s) | 186 |
| AoxI | GGCC | 3 cut(s) | 39, 378, 582 |
| ApeKI | GCWGC | 4 cut(s) | 59, 143, 631, 719 |
| AsiGI | ACCGGT | 1 cut(s) | 110 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 408 |
| AspS9I | GGNCC | 1 cut(s) | 431 |
| AsuC2I | CCSGG | 2 cut(s) | 187, 188 |
| AsuHPI | GGTGA | 2 cut(s) | 125, 197 |
| AvaI | CYCGRG | 1 cut(s) | 186 |
| AvaII | GGWCC | 1 cut(s) | 431 |
| BalI | TGGCCA | 2 cut(s) | 41, 380 |
| BbvCI | CCTCAGC | 1 cut(s) | 277 |
| BbvI | GCAGC | 4 cut(s) | 46, 130, 618, 731 |
| BccI | CCATC | 1 cut(s) | 45 |
| BciT130I | CCWGG | 1 cut(s) | 920 |
| BclI | TGATCA | 1 cut(s) | 690 |
| BcnI | CCSGG | 2 cut(s) | 187, 188 |
| BfaI | CTAG | 4 cut(s) | 81, 264, 363, 858 |
| BfmI | CTRYAG | 3 cut(s) | 144, 798, 840 |
| BfuAI | ACCTGC | 1 cut(s) | 791 |
| BisI | GCNGC | 5 cut(s) | 60, 144, 582, 632, 720 |
| BlsI | GCNGC | 5 cut(s) | 61, 145, 583, 633, 721 |
| Bme1390I | CCNGG | 3 cut(s) | 187, 188, 920 |
| Bme18I | GGWCC | 1 cut(s) | 431 |
| BmeT110I | CYCGRG | 1 cut(s) | 186 |
| BmgT120I | GGNCC | 1 cut(s) | 431 |
| BmiI | GGNNCC | 3 cut(s) | 432, 471, 511 |
| BmrFI | CCNGG | 3 cut(s) | 187, 188, 920 |
| BmsI | GCATC | 1 cut(s) | 913 |
| BpmI | CTGGAG | 1 cut(s) | 891 |
| Bpu10I | CCTNAGC | 1 cut(s) | 277 |
| BpuMI | CCSGG | 2 cut(s) | 187, 188 |
| BsaAI | YACGTR | 1 cut(s) | 676 |
| BsaBI | GATNNNNATC | 1 cut(s) | 942 |
| BsaJI | CCNNGG | 1 cut(s) | 186 |
| BsaWI | WCCGGW | 2 cut(s) | 110, 327 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 34, 440, 479, 480, 481, 536 |
| Bse118I | RCCGGY | 1 cut(s) | 110 |
| Bse1I | ACTGG | 1 cut(s) | 251 |
| Bse8I | GATNNNNATC | 1 cut(s) | 942 |
| BseBI | CCWGG | 1 cut(s) | 920 |
| BseDI | CCNNGG | 1 cut(s) | 186 |
| BseGI | GGATG | 3 cut(s) | 56, 490, 928 |
| BseJI | GATNNNNATC | 1 cut(s) | 942 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 34, 440, 479, 480, 481, 536 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BseNI | ACTGG | 1 cut(s) | 251 |
| BseRI | GAGGAG | 1 cut(s) | 905 |
| BseXI | GCAGC | 4 cut(s) | 46, 130, 618, 731 |
| BsgI | GTGCAG | 1 cut(s) | 705 |
| BshFI | GGCC | 3 cut(s) | 41, 380, 584 |
| BshTI | ACCGGT | 1 cut(s) | 110 |
| BsiHKCI | CYCGRG | 1 cut(s) | 186 |
| BsiSI | CCGG | 3 cut(s) | 111, 187, 328 |
| BslFI | GGGAC | 1 cut(s) | 11 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 34, 440, 479, 480, 481, 536 |
| BsmFI | GGGAC | 1 cut(s) | 11 |
| BsmI | GAATGC | 1 cut(s) | 205 |
| BsnI | GGCC | 3 cut(s) | 41, 380, 584 |
| BsoBI | CYCGRG | 1 cut(s) | 186 |
| Bsp143I | GATC | 2 cut(s) | 690, 742 |
| BspACI | CCGC | 2 cut(s) | 546, 581 |
| BspANI | GGCC | 3 cut(s) | 41, 380, 584 |
| BspCNI | CTCAG | 1 cut(s) | 290 |
| BspLI | GGNNCC | 3 cut(s) | 432, 471, 511 |
| BspMAI | CTGCAG | 2 cut(s) | 148, 802 |
| BspMI | ACCTGC | 1 cut(s) | 791 |
| BsrFI | RCCGGY | 1 cut(s) | 110 |
| BsrI | ACTGG | 1 cut(s) | 251 |
| BssAI | RCCGGY | 1 cut(s) | 110 |
| BssECI | CCNNGG | 1 cut(s) | 186 |
| BssMI | GATC | 2 cut(s) | 690, 742 |
| BssNAI | GTATAC | 1 cut(s) | 108 |
| Bst1107I | GTATAC | 1 cut(s) | 108 |
| Bst2UI | CCWGG | 1 cut(s) | 920 |
| Bst4CI | ACNGT | 3 cut(s) | 125, 237, 841 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 652, 661, 670 |
| BstBAI | YACGTR | 1 cut(s) | 676 |
| BstC8I | GCNNGC | 3 cut(s) | 57, 636, 653 |
| BstDEI | CTNAG | 2 cut(s) | 277, 755 |
| BstF5I | GGATG | 3 cut(s) | 56, 490, 928 |
| BstKTI | GATC | 2 cut(s) | 693, 745 |
| BstMBI | GATC | 2 cut(s) | 690, 742 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 11, 95, 652, 661, 670, 719, 767 |
| BstNI | CCWGG | 1 cut(s) | 920 |
| BstSCI | CCNGG | 3 cut(s) | 185, 186, 918 |
| BstSFI | CTRYAG | 3 cut(s) | 144, 798, 840 |
| BstV1I | GCAGC | 4 cut(s) | 46, 130, 618, 731 |
| BstZ17I | GTATAC | 1 cut(s) | 108 |
| BsuRI | GGCC | 3 cut(s) | 41, 380, 584 |
| BtsCI | GGATG | 3 cut(s) | 56, 490, 928 |
| BtsI | GCAGTG | 1 cut(s) | 693 |
| BtsIMutI | CAGTG | 3 cut(s) | 121, 693, 736 |
| BveI | ACCTGC | 1 cut(s) | 791 |
| Cac8I | GCNNGC | 3 cut(s) | 57, 636, 653 |
| Cfr10I | RCCGGY | 1 cut(s) | 110 |
| Cfr13I | GGNCC | 1 cut(s) | 431 |
| Cfr9I | CCCGGG | 1 cut(s) | 186 |
| Csp6I | GTAC | 2 cut(s) | 119, 934 |
| CspAI | ACCGGT | 1 cut(s) | 110 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 406, 441 |
| CviAII | CATG | 5 cut(s) | 271, 440, 623, 670, 887 |
| CviQI | GTAC | 2 cut(s) | 119, 934 |
| DdeI | CTNAG | 2 cut(s) | 277, 755 |
| DpnI | GATC | 2 cut(s) | 692, 744 |
| DpnII | GATC | 2 cut(s) | 690, 742 |
| DraIII | CACNNNGTG | 1 cut(s) | 127 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 858 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 858 |
| EaeI | YGGCCR | 2 cut(s) | 39, 378 |
| EciI | GGCGGA | 1 cut(s) | 561 |
| Eco47I | GGWCC | 1 cut(s) | 431 |
| Eco88I | CYCGRG | 1 cut(s) | 186 |
| EcoO109I | RGGNCCY | 1 cut(s) | 431 |
| EcoRII | CCWGG | 1 cut(s) | 918 |
| FaeI | CATG | 5 cut(s) | 274, 443, 626, 673, 890 |
| FaqI | GGGAC | 1 cut(s) | 11 |
| FatI | CATG | 5 cut(s) | 270, 439, 622, 669, 886 |
| FbaI | TGATCA | 1 cut(s) | 690 |
| FblI | GTMKAC | 2 cut(s) | 107, 826 |
| Fnu4HI | GCNGC | 5 cut(s) | 60, 144, 582, 632, 720 |
| FokI | GGATG | 3 cut(s) | 63, 497, 935 |
| Fsp4HI | GCNGC | 5 cut(s) | 60, 144, 582, 632, 720 |
| FspBI | CTAG | 4 cut(s) | 81, 264, 363, 858 |
| GluI | GCNGC | 5 cut(s) | 60, 144, 582, 632, 720 |
| GsuI | CTGGAG | 1 cut(s) | 891 |
| HaeIII | GGCC | 3 cut(s) | 41, 380, 584 |
| HapII | CCGG | 3 cut(s) | 111, 187, 328 |
| Hin1II | CATG | 5 cut(s) | 274, 443, 626, 673, 890 |
| HindIII | AAGCTT | 1 cut(s) | 293 |
| HinfI | GANTC | 4 cut(s) | 313, 791, 872, 938 |
| HpaII | CCGG | 3 cut(s) | 111, 187, 328 |
| HphI | GGTGA | 2 cut(s) | 125, 197 |
| Hpy166II | GTNNAC | 3 cut(s) | 108, 121, 827 |
| Hpy188III | TCNNGA | 2 cut(s) | 490, 908 |
| Hpy8I | GTNNAC | 3 cut(s) | 108, 121, 827 |
| HpyAV | CCTTC | 4 cut(s) | 94, 234, 235, 444 |
| HpyCH4III | ACNGT | 3 cut(s) | 125, 237, 841 |
| HpyCH4IV | ACGT | 1 cut(s) | 675 |
| HpyCH4V | TGCA | 8 cut(s) | 146, 565, 655, 664, 673, 686, 713, 800 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 11, 95, 652, 661, 670, 719, 767 |
| HpyF3I | CTNAG | 2 cut(s) | 277, 755 |
| HpySE526I | ACGT | 1 cut(s) | 675 |
| Hsp92II | CATG | 5 cut(s) | 274, 443, 626, 673, 890 |
| Ksp22I | TGATCA | 1 cut(s) | 690 |
| Kzo9I | GATC | 2 cut(s) | 690, 742 |
| LmnI | GCTCC | 2 cut(s) | 509, 910 |
| Lsp1109I | GCAGC | 4 cut(s) | 46, 130, 618, 731 |
| LweI | GCATC | 1 cut(s) | 913 |
| MaeI | CTAG | 4 cut(s) | 81, 264, 363, 858 |
| MaeII | ACGT | 1 cut(s) | 675 |
| MaeIII | GTNAC | 3 cut(s) | 252, 458, 676 |
| MalI | GATC | 2 cut(s) | 692, 744 |
| MboI | GATC | 2 cut(s) | 690, 742 |
| MboII | GAAGA | 2 cut(s) | 65, 401 |
| MlsI | TGGCCA | 2 cut(s) | 41, 380 |
| MluCI | AATT | 5 cut(s) | 229, 494, 572, 765, 774 |
| MluNI | TGGCCA | 2 cut(s) | 41, 380 |
| MlyI | GAGTC | 2 cut(s) | 785, 881 |
| MmeI | TCCRAC | 1 cut(s) | 101 |
| MnlI | CCTC | 5 cut(s) | 109, 231, 286, 394, 926 |
| Mox20I | TGGCCA | 2 cut(s) | 41, 380 |
| MroXI | GAANNNNTTC | 1 cut(s) | 408 |
| MscI | TGGCCA | 2 cut(s) | 41, 380 |
| MseI | TTAA | 4 cut(s) | 764, 777, 812, 955 |
| Msp20I | TGGCCA | 2 cut(s) | 41, 380 |
| MspI | CCGG | 3 cut(s) | 111, 187, 328 |
| MspR9I | CCNGG | 3 cut(s) | 187, 188, 920 |
| Mva1269I | GAATGC | 1 cut(s) | 205 |
| MvaI | CCWGG | 1 cut(s) | 920 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 11, 95, 652, 661, 670, 719, 767 |
| NciI | CCSGG | 2 cut(s) | 187, 188 |
| NdeII | GATC | 2 cut(s) | 690, 742 |
| NlaIII | CATG | 5 cut(s) | 274, 443, 626, 673, 890 |
| NlaIV | GGNNCC | 3 cut(s) | 432, 471, 511 |
| NmeAIII | GCCGAG | 1 cut(s) | 652 |
| PctI | GAATGC | 1 cut(s) | 205 |
| PdmI | GAANNNNTTC | 1 cut(s) | 408 |
| PfeI | GAWTC | 2 cut(s) | 313, 938 |
| PfoI | TCCNGGA | 1 cut(s) | 918 |
| PinAI | ACCGGT | 1 cut(s) | 110 |
| PkrI | GCNGC | 5 cut(s) | 61, 145, 583, 633, 721 |
| PleI | GAGTC | 2 cut(s) | 785, 880 |
| PpsI | GAGTC | 2 cut(s) | 785, 880 |
| Ppu21I | YACGTR | 1 cut(s) | 676 |
| PpuMI | RGGWCCY | 1 cut(s) | 431 |
| Psp5II | RGGWCCY | 1 cut(s) | 431 |
| Psp6I | CCWGG | 1 cut(s) | 918 |
| PspGI | CCWGG | 1 cut(s) | 918 |
| PspN4I | GGNNCC | 3 cut(s) | 432, 471, 511 |
| PspPI | GGNCC | 1 cut(s) | 431 |
| PspPPI | RGGWCCY | 1 cut(s) | 431 |
| PstI | CTGCAG | 2 cut(s) | 148, 802 |
| RsaI | GTAC | 2 cut(s) | 120, 935 |
| RsaNI | GTAC | 2 cut(s) | 119, 934 |
| SaqAI | TTAA | 4 cut(s) | 764, 777, 812, 955 |
| SatI | GCNGC | 5 cut(s) | 60, 144, 582, 632, 720 |
| Sau3AI | GATC | 2 cut(s) | 690, 742 |
| Sau96I | GGNCC | 1 cut(s) | 431 |
| SchI | GAGTC | 2 cut(s) | 785, 881 |
| ScrFI | CCNGG | 3 cut(s) | 187, 188, 920 |
| SfaNI | GCATC | 1 cut(s) | 913 |
| SfcI | CTRYAG | 3 cut(s) | 144, 798, 840 |
| SinI | GGWCC | 1 cut(s) | 431 |
| SmaI | CCCGGG | 1 cut(s) | 188 |
| Sse9I | AATT | 5 cut(s) | 229, 494, 572, 765, 774 |
| SsiI | CCGC | 2 cut(s) | 546, 581 |
| SspI | AATATT | 1 cut(s) | 70 |
| SspMI | CTAG | 4 cut(s) | 81, 264, 363, 858 |
| StyD4I | CCNGG | 3 cut(s) | 185, 186, 918 |
| TaaI | ACNGT | 3 cut(s) | 125, 237, 841 |
| TaiI | ACGT | 1 cut(s) | 678 |
| TaqI | TCGA | 2 cut(s) | 179, 850 |
| TasI | AATT | 5 cut(s) | 229, 494, 572, 765, 774 |
| TauI | GCSGC | 1 cut(s) | 584 |
| TfiI | GAWTC | 2 cut(s) | 313, 938 |
| Tru1I | TTAA | 4 cut(s) | 764, 777, 812, 955 |
| Tru9I | TTAA | 4 cut(s) | 764, 777, 812, 955 |
| TscAI | CASTG | 3 cut(s) | 128, 693, 736 |
| TseI | GCWGC | 4 cut(s) | 59, 143, 631, 719 |
| TspDTI | ATGAA | 2 cut(s) | 581, 941 |
| TspMI | CCCGGG | 1 cut(s) | 186 |
| TspRI | CASTG | 3 cut(s) | 128, 693, 736 |
| VpaK11BI | GGWCC | 1 cut(s) | 431 |
| XmaI | CCCGGG | 1 cut(s) | 186 |
| XmiI | GTMKAC | 2 cut(s) | 107, 826 |
| XmnI | GAANNNNTTC | 1 cut(s) | 408 |
| XspI | CTAG | 4 cut(s) | 81, 264, 363, 858 |