Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FAR1 | PF03101 | 78 - 147 | 1.9e-11 | FAR1 DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 51, 81, 111 |
| AcsI | RAATTY | 2 cut(s) | 22, 206 |
| AfaI | GTAC | 1 cut(s) | 337 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 197 |
| AgsI | TTSAA | 1 cut(s) | 276 |
| AluBI | AGCT | 1 cut(s) | 162 |
| AluI | AGCT | 1 cut(s) | 162 |
| ApeKI | GCWGC | 1 cut(s) | 269 |
| ApoI | RAATTY | 2 cut(s) | 22, 206 |
| AseI | ATTAAT | 1 cut(s) | 168 |
| AsuHPI | GGTGA | 1 cut(s) | 167 |
| BanII | GRGCYC | 1 cut(s) | 9 |
| BbvI | GCAGC | 1 cut(s) | 256 |
| BccI | CCATC | 4 cut(s) | 53, 83, 113, 428 |
| BceAI | ACGGC | 1 cut(s) | 175 |
| BisI | GCNGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 271 |
| BmsI | GCATC | 1 cut(s) | 355 |
| BpuEI | CTTGAG | 1 cut(s) | 291 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 197 |
| BseGI | GGATG | 1 cut(s) | 73 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 197 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseXI | GCAGC | 1 cut(s) | 256 |
| BslFI | GGGAC | 1 cut(s) | 361 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 197 |
| BsmFI | GGGAC | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp1407I | TGTACA | 1 cut(s) | 335 |
| Bsp143I | GATC | 1 cut(s) | 293 |
| BspCNI | CTCAG | 1 cut(s) | 197 |
| BsrGI | TGTACA | 1 cut(s) | 335 |
| BssMI | GATC | 1 cut(s) | 293 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 329 |
| BstAUI | TGTACA | 1 cut(s) | 335 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 1 cut(s) | 73 |
| BstKTI | GATC | 1 cut(s) | 296 |
| BstMBI | GATC | 1 cut(s) | 293 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 329 |
| BstNSI | RCATGY | 1 cut(s) | 419 |
| BstV1I | GCAGC | 1 cut(s) | 256 |
| BtsCI | GGATG | 1 cut(s) | 73 |
| Csp6I | GTAC | 1 cut(s) | 336 |
| CviAII | CATG | 5 cut(s) | 64, 261, 384, 388, 416 |
| CviJI | RGCY | 4 cut(s) | 7, 162, 190, 375 |
| CviKI_1 | RGCY | 4 cut(s) | 7, 162, 190, 375 |
| CviQI | GTAC | 1 cut(s) | 336 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| DpnI | GATC | 1 cut(s) | 295 |
| DpnII | GATC | 1 cut(s) | 293 |
| Eco24I | GRGCYC | 1 cut(s) | 9 |
| EcoT22I | ATGCAT | 1 cut(s) | 389 |
| EcoT38I | GRGCYC | 1 cut(s) | 9 |
| FaeI | CATG | 5 cut(s) | 67, 264, 387, 391, 419 |
| FaqI | GGGAC | 1 cut(s) | 361 |
| FatI | CATG | 5 cut(s) | 63, 260, 383, 387, 415 |
| Fnu4HI | GCNGC | 1 cut(s) | 270 |
| FokI | GGATG | 1 cut(s) | 80 |
| FriOI | GRGCYC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 1 cut(s) | 270 |
| GluI | GCNGC | 1 cut(s) | 270 |
| Hin1II | CATG | 5 cut(s) | 67, 264, 387, 391, 419 |
| HinfI | GANTC | 1 cut(s) | 212 |
| HphI | GGTGA | 1 cut(s) | 167 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 217 |
| Hpy188III | TCNNGA | 1 cut(s) | 308 |
| Hpy99I | CGWCG | 1 cut(s) | 294 |
| HpyAV | CCTTC | 1 cut(s) | 420 |
| HpyCH4V | TGCA | 4 cut(s) | 222, 387, 402, 415 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 329 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| Hsp92II | CATG | 5 cut(s) | 67, 264, 387, 391, 419 |
| Kzo9I | GATC | 1 cut(s) | 293 |
| LmnI | GCTCC | 1 cut(s) | 167 |
| Lsp1109I | GCAGC | 1 cut(s) | 256 |
| LweI | GCATC | 1 cut(s) | 355 |
| MaeIII | GTNAC | 1 cut(s) | 301 |
| MalI | GATC | 1 cut(s) | 295 |
| MboI | GATC | 1 cut(s) | 293 |
| MboII | GAAGA | 6 cut(s) | 50, 68, 98, 128, 143, 187 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 5 cut(s) | 22, 46, 76, 106, 206 |
| MmeI | TCCRAC | 1 cut(s) | 178 |
| MnlI | CCTC | 2 cut(s) | 28, 313 |
| Mph1103I | ATGCAT | 1 cut(s) | 389 |
| MseI | TTAA | 2 cut(s) | 20, 168 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 170 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 329 |
| NdeII | GATC | 1 cut(s) | 293 |
| NlaIII | CATG | 5 cut(s) | 67, 264, 387, 391, 419 |
| NsiI | ATGCAT | 1 cut(s) | 389 |
| NspI | RCATGY | 1 cut(s) | 419 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 376 |
| PfeI | GAWTC | 1 cut(s) | 212 |
| PkrI | GCNGC | 1 cut(s) | 271 |
| PshBI | ATTAAT | 1 cut(s) | 168 |
| PsiI | TTATAA | 3 cut(s) | 51, 81, 111 |
| RsaI | GTAC | 1 cut(s) | 337 |
| RsaNI | GTAC | 1 cut(s) | 336 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 170 |
| SaqAI | TTAA | 2 cut(s) | 20, 168 |
| SatI | GCNGC | 1 cut(s) | 270 |
| Sau3AI | GATC | 1 cut(s) | 293 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 3 cut(s) | 164, 303, 408 |
| SfaNI | GCATC | 1 cut(s) | 355 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 170 |
| SmlI | CTYRAG | 1 cut(s) | 306 |
| SmoI | CTYRAG | 1 cut(s) | 306 |
| Sse9I | AATT | 5 cut(s) | 22, 46, 76, 106, 206 |
| TaqI | TCGA | 4 cut(s) | 9, 15, 292, 318 |
| TasI | AATT | 5 cut(s) | 22, 46, 76, 106, 206 |
| TatI | WGTACW | 1 cut(s) | 335 |
| TfiI | GAWTC | 1 cut(s) | 212 |
| Tru1I | TTAA | 2 cut(s) | 20, 168 |
| Tru9I | TTAA | 2 cut(s) | 20, 168 |
| TseI | GCWGC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 6 cut(s) | 69, 99, 110, 129, 188, 404 |
| VspI | ATTAAT | 1 cut(s) | 168 |
| XapI | RAATTY | 2 cut(s) | 22, 206 |
| XceI | RCATGY | 1 cut(s) | 419 |
| Zsp2I | ATGCAT | 1 cut(s) | 389 |