Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 4 - 82 | 1e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 14 |
| AdeI | CACNNNGTG | 1 cut(s) | 26 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 58 |
| AluBI | AGCT | 1 cut(s) | 68 |
| AluI | AGCT | 1 cut(s) | 68 |
| AspLEI | GCGC | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 4 cut(s) | 41, 92, 134, 410 |
| BauI | CACGAG | 1 cut(s) | 336 |
| BccI | CCATC | 2 cut(s) | 113, 314 |
| BfaI | CTAG | 3 cut(s) | 30, 249, 409 |
| BfmI | CTRYAG | 1 cut(s) | 114 |
| BsaAI | YACGTR | 1 cut(s) | 26 |
| BsaJI | CCNNGG | 1 cut(s) | 52 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 58 |
| Bse1I | ACTGG | 1 cut(s) | 240 |
| BseDI | CCNNGG | 1 cut(s) | 52 |
| BseGI | GGATG | 3 cut(s) | 67, 310, 325 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BseNI | ACTGG | 1 cut(s) | 240 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 58 |
| Bsp143I | GATC | 1 cut(s) | 251 |
| BspACI | CCGC | 1 cut(s) | 14 |
| BsrI | ACTGG | 1 cut(s) | 240 |
| BssECI | CCNNGG | 1 cut(s) | 52 |
| BssMI | GATC | 1 cut(s) | 251 |
| BssSI | CACGAG | 1 cut(s) | 336 |
| BssT1I | CCWWGG | 1 cut(s) | 52 |
| Bst2BI | CACGAG | 1 cut(s) | 336 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstBAI | YACGTR | 1 cut(s) | 26 |
| BstF5I | GGATG | 3 cut(s) | 67, 310, 325 |
| BstHHI | GCGC | 1 cut(s) | 229 |
| BstKTI | GATC | 1 cut(s) | 254 |
| BstMBI | GATC | 1 cut(s) | 251 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 26, 245 |
| BstSFI | CTRYAG | 1 cut(s) | 114 |
| BtgZI | GCGATG | 1 cut(s) | 25 |
| BtsCI | GGATG | 3 cut(s) | 67, 310, 325 |
| CfoI | GCGC | 1 cut(s) | 229 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 204, 239 |
| CviAII | CATG | 3 cut(s) | 7, 313, 394 |
| CviJI | RGCY | 5 cut(s) | 68, 110, 176, 239, 286 |
| CviKI_1 | RGCY | 5 cut(s) | 68, 110, 176, 239, 286 |
| DpnI | GATC | 1 cut(s) | 253 |
| DpnII | GATC | 1 cut(s) | 251 |
| DraI | TTTAAA | 1 cut(s) | 264 |
| DraIII | CACNNNGTG | 1 cut(s) | 26 |
| EciI | GGCGGA | 1 cut(s) | 29 |
| Eco130I | CCWWGG | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 1 cut(s) | 52 |
| ErhI | CCWWGG | 1 cut(s) | 52 |
| FaeI | CATG | 3 cut(s) | 10, 316, 397 |
| FatI | CATG | 3 cut(s) | 6, 312, 393 |
| FokI | GGATG | 3 cut(s) | 74, 317, 332 |
| FspBI | CTAG | 3 cut(s) | 30, 249, 409 |
| GlaI | GCGC | 1 cut(s) | 228 |
| HhaI | GCGC | 1 cut(s) | 229 |
| Hin1II | CATG | 3 cut(s) | 10, 316, 397 |
| Hin6I | GCGC | 1 cut(s) | 227 |
| HinP1I | GCGC | 1 cut(s) | 227 |
| HincII | GTYRAC | 1 cut(s) | 280 |
| HindII | GTYRAC | 1 cut(s) | 280 |
| HphI | GGTGA | 4 cut(s) | 41, 92, 134, 410 |
| Hpy166II | GTNNAC | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 2 cut(s) | 154, 182 |
| Hpy188III | TCNNGA | 3 cut(s) | 290, 302, 336 |
| Hpy8I | GTNNAC | 1 cut(s) | 280 |
| HpyAV | CCTTC | 1 cut(s) | 94 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4IV | ACGT | 2 cut(s) | 25, 201 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 89 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 26, 245 |
| HpySE526I | ACGT | 2 cut(s) | 25, 201 |
| Hsp92II | CATG | 3 cut(s) | 10, 316, 397 |
| HspAI | GCGC | 1 cut(s) | 227 |
| Kzo9I | GATC | 1 cut(s) | 251 |
| LpnPI | CCDG | 3 cut(s) | 221, 287, 303 |
| MaeI | CTAG | 3 cut(s) | 30, 249, 409 |
| MaeII | ACGT | 2 cut(s) | 25, 201 |
| MaeIII | GTNAC | 1 cut(s) | 197 |
| MalI | GATC | 1 cut(s) | 253 |
| MboI | GATC | 1 cut(s) | 251 |
| MluCI | AATT | 1 cut(s) | 45 |
| MnlI | CCTC | 9 cut(s) | 4, 10, 70, 127, 166, 297, 310, 332, 370 |
| MseI | TTAA | 2 cut(s) | 263, 381 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 26, 245 |
| NdeII | GATC | 1 cut(s) | 251 |
| NlaIII | CATG | 3 cut(s) | 10, 316, 397 |
| NmuCI | GTSAC | 1 cut(s) | 197 |
| Ppu21I | YACGTR | 1 cut(s) | 26 |
| SaqAI | TTAA | 2 cut(s) | 263, 381 |
| Sau3AI | GATC | 1 cut(s) | 251 |
| SetI | ASST | 6 cut(s) | 28, 70, 138, 204, 343, 349 |
| SfcI | CTRYAG | 1 cut(s) | 114 |
| Sse9I | AATT | 1 cut(s) | 45 |
| SsiI | CCGC | 1 cut(s) | 14 |
| SspMI | CTAG | 3 cut(s) | 30, 249, 409 |
| StyI | CCWWGG | 1 cut(s) | 52 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaiI | ACGT | 2 cut(s) | 28, 204 |
| TaqI | TCGA | 2 cut(s) | 75, 257 |
| TasI | AATT | 1 cut(s) | 45 |
| Tru1I | TTAA | 2 cut(s) | 263, 381 |
| Tru9I | TTAA | 2 cut(s) | 263, 381 |
| TseFI | GTSAC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 1 cut(s) | 197 |
| TspDTI | ATGAA | 3 cut(s) | 28, 78, 113 |
| XspI | CTAG | 3 cut(s) | 30, 249, 409 |