Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 156 |
| Acc36I | ACCTGC | 1 cut(s) | 131 |
| AccB1I | GGYRCC | 1 cut(s) | 271 |
| AccI | GTMKAC | 1 cut(s) | 360 |
| AciI | CCGC | 1 cut(s) | 305 |
| AclWI | GGATC | 1 cut(s) | 225 |
| AcyI | GRCGYC | 1 cut(s) | 272 |
| AfaI | GTAC | 2 cut(s) | 184, 418 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 370 |
| AgsI | TTSAA | 3 cut(s) | 177, 314, 353 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 422, 454 |
| AluBI | AGCT | 4 cut(s) | 515, 524, 572, 590 |
| AluI | AGCT | 4 cut(s) | 515, 524, 572, 590 |
| AlwI | GGATC | 1 cut(s) | 225 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 230 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApeKI | GCWGC | 2 cut(s) | 58, 590 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 127, 159 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 453 |
| AspLEI | GCGC | 2 cut(s) | 157, 274 |
| AsuHPI | GGTGA | 2 cut(s) | 53, 407 |
| AsuNHI | GCTAGC | 1 cut(s) | 511 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 408, 441 |
| BanI | GGYRCC | 1 cut(s) | 271 |
| BbvI | GCAGC | 2 cut(s) | 45, 577 |
| BccI | CCATC | 1 cut(s) | 386 |
| BceAI | ACGGC | 1 cut(s) | 285 |
| BfaI | CTAG | 4 cut(s) | 512, 516, 579, 607 |
| BfmI | CTRYAG | 2 cut(s) | 420, 567 |
| BfoI | RGCGCY | 1 cut(s) | 275 |
| BfuAI | ACCTGC | 1 cut(s) | 131 |
| BglII | AGATCT | 1 cut(s) | 535 |
| BisI | GCNGC | 3 cut(s) | 59, 306, 591 |
| BlsI | GCNGC | 3 cut(s) | 60, 307, 592 |
| BmcAI | AGTACT | 1 cut(s) | 184 |
| BmiI | GGNNCC | 2 cut(s) | 273, 339 |
| BmsI | GCATC | 2 cut(s) | 21, 114 |
| BmtI | GCTAGC | 1 cut(s) | 515 |
| BsaBI | GATNNNNATC | 1 cut(s) | 540 |
| BsaHI | GRCGYC | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 2 cut(s) | 267, 291 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 370 |
| Bse1I | ACTGG | 1 cut(s) | 375 |
| Bse3DI | GCAATG | 2 cut(s) | 327, 380 |
| Bse8I | GATNNNNATC | 1 cut(s) | 540 |
| BseDI | CCNNGG | 2 cut(s) | 267, 291 |
| BseGI | GGATG | 1 cut(s) | 36 |
| BseJI | GATNNNNATC | 1 cut(s) | 540 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 370 |
| BseMI | GCAATG | 2 cut(s) | 327, 380 |
| BseMII | CTCAG | 1 cut(s) | 546 |
| BseNI | ACTGG | 1 cut(s) | 375 |
| BseXI | GCAGC | 2 cut(s) | 45, 577 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BshNI | GGYRCC | 1 cut(s) | 271 |
| BsiSI | CCGG | 1 cut(s) | 275 |
| BslFI | GGGAC | 3 cut(s) | 241, 443, 548 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 370 |
| BsmFI | GGGAC | 3 cut(s) | 241, 443, 548 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bsp143I | GATC | 5 cut(s) | 217, 282, 400, 535, 541 |
| BspACI | CCGC | 1 cut(s) | 305 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspCNI | CTCAG | 1 cut(s) | 545 |
| BspLI | GGNNCC | 2 cut(s) | 273, 339 |
| BspMI | ACCTGC | 1 cut(s) | 131 |
| BspOI | GCTAGC | 1 cut(s) | 515 |
| BspPI | GGATC | 1 cut(s) | 225 |
| BspT107I | GGYRCC | 1 cut(s) | 271 |
| BsrDI | GCAATG | 2 cut(s) | 327, 380 |
| BsrI | ACTGG | 1 cut(s) | 375 |
| BssECI | CCNNGG | 2 cut(s) | 267, 291 |
| BssMI | GATC | 5 cut(s) | 217, 282, 400, 535, 541 |
| BssNI | GRCGYC | 1 cut(s) | 272 |
| BssT1I | CCWWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 3 cut(s) | 232, 358, 424 |
| BstACI | GRCGYC | 1 cut(s) | 272 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 137, 163, 302 |
| BstC8I | GCNNGC | 7 cut(s) | 129, 153, 168, 298, 336, 387, 513 |
| BstDEI | CTNAG | 2 cut(s) | 35, 532 |
| BstF5I | GGATG | 1 cut(s) | 36 |
| BstH2I | RGCGCY | 1 cut(s) | 275 |
| BstHHI | GCGC | 2 cut(s) | 157, 274 |
| BstKTI | GATC | 5 cut(s) | 220, 285, 403, 538, 544 |
| BstMBI | GATC | 5 cut(s) | 217, 282, 400, 535, 541 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 137, 163, 258, 302, 521 |
| BstSFI | CTRYAG | 2 cut(s) | 420, 567 |
| BstV1I | GCAGC | 2 cut(s) | 45, 577 |
| BstX2I | RGATCY | 1 cut(s) | 535 |
| BstYI | RGATCY | 1 cut(s) | 535 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BtsCI | GGATG | 1 cut(s) | 36 |
| BveI | ACCTGC | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 7 cut(s) | 129, 153, 168, 298, 336, 387, 513 |
| CaiI | CAGNNNCTG | 1 cut(s) | 230 |
| CfoI | GCGC | 2 cut(s) | 157, 274 |
| Csp6I | GTAC | 2 cut(s) | 183, 417 |
| CviAII | CATG | 2 cut(s) | 121, 597 |
| CviQI | GTAC | 2 cut(s) | 183, 417 |
| DdeI | CTNAG | 2 cut(s) | 35, 532 |
| DinI | GGCGCC | 1 cut(s) | 273 |
| DpnI | GATC | 5 cut(s) | 219, 284, 402, 537, 543 |
| DpnII | GATC | 5 cut(s) | 217, 282, 400, 535, 541 |
| Eco130I | CCWWGG | 1 cut(s) | 291 |
| Eco147I | AGGCCT | 1 cut(s) | 290 |
| EcoT14I | CCWWGG | 1 cut(s) | 291 |
| EgeI | GGCGCC | 1 cut(s) | 273 |
| EheI | GGCGCC | 1 cut(s) | 273 |
| ErhI | CCWWGG | 1 cut(s) | 291 |
| FaeI | CATG | 2 cut(s) | 124, 600 |
| FaqI | GGGAC | 3 cut(s) | 241, 443, 548 |
| FatI | CATG | 2 cut(s) | 120, 596 |
| FblI | GTMKAC | 1 cut(s) | 360 |
| Fnu4HI | GCNGC | 3 cut(s) | 59, 306, 591 |
| FokI | GGATG | 1 cut(s) | 43 |
| Fsp4HI | GCNGC | 3 cut(s) | 59, 306, 591 |
| FspAI | RTGCGCAY | 1 cut(s) | 156 |
| FspBI | CTAG | 4 cut(s) | 512, 516, 579, 607 |
| FspI | TGCGCA | 1 cut(s) | 156 |
| GlaI | GCGC | 2 cut(s) | 156, 273 |
| GluI | GCNGC | 3 cut(s) | 59, 306, 591 |
| HaeII | RGCGCY | 1 cut(s) | 275 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| HapII | CCGG | 1 cut(s) | 275 |
| HhaI | GCGC | 2 cut(s) | 157, 274 |
| Hin1I | GRCGYC | 1 cut(s) | 272 |
| Hin1II | CATG | 2 cut(s) | 124, 600 |
| Hin6I | GCGC | 2 cut(s) | 155, 272 |
| HinP1I | GCGC | 2 cut(s) | 155, 272 |
| HinfI | GANTC | 1 cut(s) | 449 |
| HpaII | CCGG | 1 cut(s) | 275 |
| HphI | GGTGA | 2 cut(s) | 53, 407 |
| Hpy166II | GTNNAC | 1 cut(s) | 361 |
| Hpy188I | TCNGA | 1 cut(s) | 535 |
| Hpy188III | TCNNGA | 1 cut(s) | 539 |
| Hpy8I | GTNNAC | 1 cut(s) | 361 |
| HpyCH4III | ACNGT | 3 cut(s) | 232, 358, 424 |
| HpyCH4IV | ACGT | 1 cut(s) | 172 |
| HpyCH4V | TGCA | 4 cut(s) | 140, 170, 252, 320 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 137, 163, 258, 302, 521 |
| HpyF3I | CTNAG | 2 cut(s) | 35, 532 |
| HpySE526I | ACGT | 1 cut(s) | 172 |
| Hsp92I | GRCGYC | 1 cut(s) | 272 |
| Hsp92II | CATG | 2 cut(s) | 124, 600 |
| HspAI | GCGC | 2 cut(s) | 155, 272 |
| KasI | GGCGCC | 1 cut(s) | 271 |
| Kzo9I | GATC | 5 cut(s) | 217, 282, 400, 535, 541 |
| LmnI | GCTCC | 2 cut(s) | 343, 598 |
| Lsp1109I | GCAGC | 2 cut(s) | 45, 577 |
| LweI | GCATC | 2 cut(s) | 21, 114 |
| MaeI | CTAG | 4 cut(s) | 512, 516, 579, 607 |
| MaeII | ACGT | 1 cut(s) | 172 |
| MaeIII | GTNAC | 1 cut(s) | 479 |
| MalI | GATC | 5 cut(s) | 219, 284, 402, 537, 543 |
| MboI | GATC | 5 cut(s) | 217, 282, 400, 535, 541 |
| MfeI | CAATTG | 1 cut(s) | 255 |
| MflI | RGATCY | 1 cut(s) | 535 |
| MluCI | AATT | 5 cut(s) | 47, 135, 255, 376, 493 |
| Mly113I | GGCGCC | 1 cut(s) | 272 |
| MnlI | CCTC | 5 cut(s) | 233, 262, 280, 452, 481 |
| MroXI | GAANNNNTTC | 1 cut(s) | 453 |
| MseI | TTAA | 3 cut(s) | 51, 366, 375 |
| MspI | CCGG | 1 cut(s) | 275 |
| MunI | CAATTG | 1 cut(s) | 255 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 137, 163, 258, 302, 521 |
| NarI | GGCGCC | 1 cut(s) | 272 |
| NdeII | GATC | 5 cut(s) | 217, 282, 400, 535, 541 |
| NheI | GCTAGC | 1 cut(s) | 511 |
| NlaIII | CATG | 2 cut(s) | 124, 600 |
| NlaIV | GGNNCC | 2 cut(s) | 273, 339 |
| NmeAIII | GCCGAG | 1 cut(s) | 292 |
| NsbI | TGCGCA | 1 cut(s) | 156 |
| PceI | AGGCCT | 1 cut(s) | 290 |
| PdmI | GAANNNNTTC | 1 cut(s) | 453 |
| PfeI | GAWTC | 1 cut(s) | 449 |
| PkrI | GCNGC | 3 cut(s) | 60, 307, 592 |
| PluTI | GGCGCC | 1 cut(s) | 275 |
| PspN4I | GGNNCC | 2 cut(s) | 273, 339 |
| PstNI | CAGNNNCTG | 1 cut(s) | 230 |
| PsuI | RGATCY | 1 cut(s) | 535 |
| RsaI | GTAC | 2 cut(s) | 184, 418 |
| RsaNI | GTAC | 2 cut(s) | 183, 417 |
| SaqAI | TTAA | 3 cut(s) | 51, 366, 375 |
| SatI | GCNGC | 3 cut(s) | 59, 306, 591 |
| Sau3AI | GATC | 5 cut(s) | 217, 282, 400, 535, 541 |
| ScaI | AGTACT | 1 cut(s) | 184 |
| SetI | ASST | 8 cut(s) | 145, 175, 244, 366, 517, 526, 574, 592 |
| SfaNI | GCATC | 2 cut(s) | 21, 114 |
| SfcI | CTRYAG | 2 cut(s) | 420, 567 |
| SfoI | GGCGCC | 1 cut(s) | 273 |
| Sse9I | AATT | 5 cut(s) | 47, 135, 255, 376, 493 |
| SseBI | AGGCCT | 1 cut(s) | 290 |
| SsiI | CCGC | 1 cut(s) | 305 |
| SspDI | GGCGCC | 1 cut(s) | 271 |
| SspMI | CTAG | 4 cut(s) | 512, 516, 579, 607 |
| StuI | AGGCCT | 1 cut(s) | 290 |
| StyI | CCWWGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 3 cut(s) | 232, 358, 424 |
| TaiI | ACGT | 1 cut(s) | 175 |
| TaqI | TCGA | 2 cut(s) | 285, 540 |
| TasI | AATT | 5 cut(s) | 47, 135, 255, 376, 493 |
| TatI | WGTACW | 1 cut(s) | 182 |
| TauI | GCSGC | 1 cut(s) | 308 |
| TfiI | GAWTC | 1 cut(s) | 449 |
| Tru1I | TTAA | 3 cut(s) | 51, 366, 375 |
| Tru9I | TTAA | 3 cut(s) | 51, 366, 375 |
| TseI | GCWGC | 2 cut(s) | 58, 590 |
| TspDTI | ATGAA | 3 cut(s) | 369, 453, 464 |
| XmiI | GTMKAC | 1 cut(s) | 360 |
| XmnI | GAANNNNTTC | 1 cut(s) | 453 |
| XspI | CTAG | 4 cut(s) | 512, 516, 579, 607 |
| ZrmI | AGTACT | 1 cut(s) | 184 |