RchiOBHm_Chr6g0267671

Glycosyl hydrolase family 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030395
Physical Location & Seq
Forward (+)
24491202 .. 24491720
519 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24009

Sequence Viewer

Length: 333 bp
ATGTCAGTCCAACAACCCTTCGCCAAATCGCCAAAAAGCAGGTTGATTACATTTTGGGTGATAATCCAATGGGTTTGTCATACATGGTCGGATACAGCGACCATTATCCACAGTGAATTCACCACCGTGGATCTTCTTTACCATCTATCAAGGATCATCCCCAACCCATTGCTTGCAAGGAAGGCTCAGTGTACTTCAATTCGAGGACCTGGAGAAGATGATGTCTATGAGGATGATCGCGCTGATTTTAGGAAGTCTGAACCGACCACATACATTAATGCACCATTTGTTGGTGTTTTGGCATACTTTGTGGCTAATCCCAGTCCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

110

Amino Acids

12.51

Weight (kDa)

6.25

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 69 - 100 8.4e-07 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0030395)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267671
rosa_multiflora Rmu_sc0008184.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 290
AccII CGCG 1 cut(s) 240
AclWI GGATC 2 cut(s) 138, 161
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 125
AlwI GGATC 2 cut(s) 138, 161
ApoI RAATTY 1 cut(s) 116
AseI ATTAAT 1 cut(s) 276
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 70, 112
AvaII GGWCC 1 cut(s) 206
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 30
BfuI GTATCC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 156, 238
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 290
Bsp143I GATC 3 cut(s) 130, 153, 235
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 138, 161
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 130, 153, 235
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 113, 127
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 156, 238
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 3 cut(s) 133, 156, 238
BstMBI GATC 3 cut(s) 130, 153, 235
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstUI CGCG 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuI GTATCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 156, 238
BtsIMutI CAGTG 2 cut(s) 118, 194
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 192
CviAII CATG 1 cut(s) 84
CviJI RGCY 2 cut(s) 185, 314
CviKI_1 RGCY 2 cut(s) 185, 314
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 186
DpnI GATC 3 cut(s) 132, 155, 237
DpnII GATC 3 cut(s) 130, 153, 235
Eco47I GGWCC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 87
FaiI YATR 5 cut(s) 81, 85, 228, 271, 304
FatI CATG 1 cut(s) 83
FokI GGATG 2 cut(s) 143, 245
FspBI CTAG 1 cut(s) 331
GlaI GCGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 231
HhaI GCGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 87
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HphI GGTGA 2 cut(s) 70, 112
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 91, 259
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 28, 175
HpyCH4III ACNGT 2 cut(s) 113, 127
HpyCH4V TGCA 2 cut(s) 176, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 1 cut(s) 87
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 130, 153, 235
LpnPI CCDG 3 cut(s) 25, 195, 222
MaeI CTAG 1 cut(s) 331
MalI GATC 3 cut(s) 132, 155, 237
MboI GATC 3 cut(s) 130, 153, 235
MboII GAAGA 2 cut(s) 125, 227
MflI RGATCY 1 cut(s) 130
MluCI AATT 2 cut(s) 116, 198
MmeI TCCRAC 2 cut(s) 34, 69
MnlI CCTC 2 cut(s) 197, 223
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 3 cut(s) 130, 153, 235
NlaIII CATG 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 206
PshBI ATTAAT 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 276
Sau3AI GATC 3 cut(s) 130, 153, 235
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 210
SetI ASST 2 cut(s) 44, 211
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 2 cut(s) 116, 198
SspMI CTAG 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 113, 127
TaqI TCGA 1 cut(s) 202
TasI AATT 2 cut(s) 116, 198
TatI WGTACW 1 cut(s) 191
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 2 cut(s) 118, 194
TspRI CASTG 2 cut(s) 118, 194
Van91I CCANNNNNTGG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 206
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 1 cut(s) 116
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.