Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008184.1

Orthogroup ID

OG0030395

Physical Location & Seq

Genomic Coordinates Forward (+)

72480 .. 73909

Gene Structure 1430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008184.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgccgtggactcgccaaatccagcttctgatgttgctggtgagacagctgcggcgctggcagcttcctcaatggcattccgatcatcagaccaaactgatatgccgtggactcgccaggactgtatatgccgtggactcgccaaatccagcttctgatgttgctagagatggtgtctgcccattttactgtgatttcgatggttaccaagacgaattgctatggagtgcagcctggctgaggagagtcactcaggatggtggttaccttgactacatacaaaacaatggcaaaactcttggtgcagaggacaatataaacgaatttggttgggacaacaagcatgctggcctcaatgttctaatctccaaggaagtcctggaaggcaacatgtacaaccttgaatcgtacaaatcatcggctgatagctttcatgtgcacattaataccggagtcatcatcctcccacatcgaatgtcagtccaacaacgcttcgccaaatcgccaaaaagcaggttgattacattttgggtgataatccaatgggtttgtcatacatggtcggatacagtgaccattatccgcagcgaattcaccaccgtggatcttctttaccatctatcaagaatcatccccaacccattgcttgcaaggaaggctcagtgtacctcaattcgtcaaaccctaaccctaataggaggacctggagaagatgatgtgtatgaggatgatcgcgttgattttaggaagtccgaaccgaccacatacattaatgcaccatttgttggtgttttggcatactttgtggctaatcccagtccaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

275

Amino Acids

31.57

Weight (kDa)

6.44

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030395)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267671
rosa_multiflora	Rmu_sc0008184.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	504
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccII	CGCG	1 cut(s)	735
AciI	CCGC	2 cut(s)	52, 583
AclWI	GGATC	1 cut(s)	612
AcsI	RAATTY	2 cut(s)	323, 590
AfaI	GTAC	3 cut(s)	395, 410, 667
AfiI	CCNNNNNNNGG	2 cut(s)	240, 785
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	4 cut(s)	116, 233, 378, 703
AjuI	GAANNNNNNNTTGG	4 cut(s)	9, 41, 136, 168
AleI	CACNNNNGTG	1 cut(s)	599
AluBI	AGCT	5 cut(s)	25, 49, 64, 152, 429
AluI	AGCT	5 cut(s)	25, 49, 64, 152, 429
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	37
Alw44I	GTGCAC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	612
AlwNI	CAGNNNCTG	2 cut(s)	28, 155
AoxI	GGCC	1 cut(s)	349
ApaLI	GTGCAC	1 cut(s)	437
ApeKI	GCWGC	4 cut(s)	49, 61, 230, 585
ApoI	RAATTY	2 cut(s)	323, 590
AseI	ATTAAT	2 cut(s)	444, 771
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	701
AsuHPI	GGTGA	3 cut(s)	52, 544, 586
AvaII	GGWCC	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	36, 73, 242, 597
BccI	CCATC	4 cut(s)	164, 194, 251, 624
BceAI	ACGGC	2 cut(s)	90, 116
BciT130I	CCWGG	4 cut(s)	118, 235, 380, 705
BciVI	GTATCC	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	165, 826
BfoI	RGCGCY	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	5 cut(s)	50, 53, 62, 231, 586
BlsI	GCNGC	5 cut(s)	51, 54, 63, 232, 587
Bme1390I	CCNGG	4 cut(s)	118, 235, 380, 705
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	701
BmrFI	CCNGG	4 cut(s)	118, 235, 380, 705
BmrI	ACTGGG	1 cut(s)	810
BmuI	ACTGGG	1 cut(s)	810
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpmI	CTGGAG	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	239
BsaJI	CCNNGG	5 cut(s)	5, 106, 132, 369, 600
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 785
Bse1I	ACTGG	1 cut(s)	816
Bse3DI	GCAATG	1 cut(s)	641
BseBI	CCWGG	4 cut(s)	118, 235, 380, 705
BseDI	CCNNGG	5 cut(s)	5, 106, 132, 369, 600
BseGI	GGATG	4 cut(s)	262, 459, 630, 733
BseLI	CCNNNNNNNGG	2 cut(s)	240, 785
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	3 cut(s)	230, 266, 674
BseNI	ACTGG	1 cut(s)	816
BseRI	GAGGAG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	4 cut(s)	36, 73, 242, 597
BsgI	GTGCAG	2 cut(s)	249, 324
Bsh1236I	CGCG	1 cut(s)	735
BshFI	GGCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	240, 785
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	82, 604, 730
BspACI	CCGC	2 cut(s)	52, 583
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	3 cut(s)	231, 265, 673
BspFNI	CGCG	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	504
BspPI	GGATC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	641
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	816
BssECI	CCNNGG	5 cut(s)	5, 106, 132, 369, 600
BssMI	GATC	3 cut(s)	82, 604, 730
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	4 cut(s)	118, 235, 380, 705
Bst4CI	ACNGT	4 cut(s)	124, 191, 571, 601
BstAUI	TGTACA	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	59, 345, 349, 648
BstDEI	CTNAG	3 cut(s)	239, 252, 660
BstDSI	CCRYGG	4 cut(s)	5, 106, 132, 600
BstEII	GGTNACC	2 cut(s)	203, 263
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	262, 459, 630, 733
BstFNI	CGCG	1 cut(s)	735
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	3 cut(s)	85, 607, 733
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	82, 604, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 61, 656
BstNI	CCWGG	4 cut(s)	118, 235, 380, 705
BstNSI	RCATGY	2 cut(s)	347, 394
BstPI	GGTNACC	2 cut(s)	203, 263
BstSCI	CCNGG	4 cut(s)	116, 233, 378, 703
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	1 cut(s)	735
BstV1I	GCAGC	4 cut(s)	36, 73, 242, 597
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	351
BtgI	CCRYGG	4 cut(s)	5, 106, 132, 600
BtsCI	GGATG	4 cut(s)	262, 459, 630, 733
BtsIMutI	CAGTG	2 cut(s)	576, 668
BveI	ACCTGC	1 cut(s)	504
Cac8I	GCNNGC	4 cut(s)	59, 345, 349, 648
CaiI	CAGNNNCTG	2 cut(s)	28, 155
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	701
Csp6I	GTAC	3 cut(s)	394, 409, 666
CviAII	CATG	4 cut(s)	344, 391, 434, 558
CviQI	GTAC	3 cut(s)	394, 409, 666
DdeI	CTNAG	3 cut(s)	239, 252, 660
DpnI	GATC	3 cut(s)	84, 606, 732
DpnII	GATC	3 cut(s)	82, 604, 730
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	701
Eco91I	GGTNACC	2 cut(s)	203, 263
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	701
EcoO65I	GGTNACC	2 cut(s)	203, 263
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	4 cut(s)	116, 233, 378, 703
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	4 cut(s)	347, 394, 437, 561
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	4 cut(s)	343, 390, 433, 557
Fnu4HI	GCNGC	5 cut(s)	50, 53, 62, 231, 586
FokI	GGATG	4 cut(s)	269, 446, 617, 740
Fsp4HI	GCNGC	5 cut(s)	50, 53, 62, 231, 586
FspBI	CTAG	2 cut(s)	165, 826
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	5 cut(s)	50, 53, 62, 231, 586
GsuI	CTGGAG	1 cut(s)	726
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	347, 394, 437, 561
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HinfI	GANTC	7 cut(s)	10, 111, 137, 246, 404, 453, 627
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	3 cut(s)	52, 544, 586
Hpy166II	GTNNAC	5 cut(s)	9, 110, 136, 439, 666
Hpy188I	TCNGA	6 cut(s)	30, 82, 90, 157, 565, 754
Hpy188III	TCNNGA	2 cut(s)	254, 624
Hpy8I	GTNNAC	5 cut(s)	9, 110, 136, 439, 666
HpyAV	CCTTC	2 cut(s)	377, 649
HpyCH4III	ACNGT	4 cut(s)	124, 191, 571, 601
HpyCH4V	TGCA	5 cut(s)	230, 305, 439, 650, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 61, 656
HpyF3I	CTNAG	3 cut(s)	239, 252, 660
Hsp92II	CATG	4 cut(s)	347, 394, 437, 561
HspAI	GCGC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	82, 604, 730
Lsp1109I	GCAGC	4 cut(s)	36, 73, 242, 597
MaeI	CTAG	2 cut(s)	165, 826
MaeIII	GTNAC	4 cut(s)	203, 247, 263, 571
MalI	GATC	3 cut(s)	84, 606, 732
MboI	GATC	3 cut(s)	82, 604, 730
MboII	GAAGA	2 cut(s)	599, 722
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	4 cut(s)	215, 323, 590, 672
MlyI	GAGTC	5 cut(s)	4, 105, 131, 255, 462
MmeI	TCCRAC	2 cut(s)	508, 543
MnlI	CCTC	8 cut(s)	78, 234, 301, 362, 473, 679, 692, 718
MseI	TTAA	2 cut(s)	444, 771
MslI	CAYNNNNRTG	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	4 cut(s)	118, 235, 380, 705
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	4 cut(s)	118, 235, 380, 705
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	58, 61, 656
NdeII	GATC	3 cut(s)	82, 604, 730
NlaIII	CATG	4 cut(s)	347, 394, 437, 561
NmuCI	GTSAC	2 cut(s)	247, 571
NspI	RCATGY	2 cut(s)	347, 394
OliI	CACNNNNGTG	1 cut(s)	599
PaeI	GCATGC	1 cut(s)	347
PciI	ACATGT	1 cut(s)	390
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	404, 627
PflMI	CCANNNNNTGG	1 cut(s)	785
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	5 cut(s)	51, 54, 63, 232, 587
PleI	GAGTC	5 cut(s)	4, 105, 131, 254, 461
PpsI	GAGTC	5 cut(s)	4, 105, 131, 254, 461
PpuMI	RGGWCCY	1 cut(s)	701
PscI	ACATGT	1 cut(s)	390
PshBI	ATTAAT	2 cut(s)	444, 771
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	4 cut(s)	116, 233, 378, 703
PspEI	GGTNACC	2 cut(s)	203, 263
PspGI	CCWGG	4 cut(s)	116, 233, 378, 703
PspPI	GGNCC	1 cut(s)	701
PspPPI	RGGWCCY	1 cut(s)	701
PstNI	CAGNNNCTG	2 cut(s)	28, 155
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	3 cut(s)	395, 410, 667
RsaNI	GTAC	3 cut(s)	394, 409, 666
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	444, 771
SatI	GCNGC	5 cut(s)	50, 53, 62, 231, 586
Sau3AI	GATC	3 cut(s)	82, 604, 730
Sau96I	GGNCC	1 cut(s)	701
SchI	GAGTC	5 cut(s)	4, 105, 131, 255, 462
ScrFI	CCNGG	4 cut(s)	118, 235, 380, 705
SduI	GDGCHC	1 cut(s)	441
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	599
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	4 cut(s)	215, 323, 590, 672
SsiI	CCGC	2 cut(s)	52, 583
SspMI	CTAG	2 cut(s)	165, 826
StyD4I	CCNGG	4 cut(s)	116, 233, 378, 703
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	4 cut(s)	124, 191, 571, 601
TaqI	TCGA	2 cut(s)	198, 472
TasI	AATT	4 cut(s)	215, 323, 590, 672
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	404, 627
Tru1I	TTAA	2 cut(s)	444, 771
Tru9I	TTAA	2 cut(s)	444, 771
TscAI	CASTG	2 cut(s)	576, 668
TseFI	GTSAC	2 cut(s)	247, 571
TseI	GCWGC	4 cut(s)	49, 61, 230, 585
Tsp45I	GTSAC	2 cut(s)	247, 571
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	2 cut(s)	576, 668
Van91I	CCANNNNNTGG	1 cut(s)	785
VneI	GTGCAC	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	701
VspI	ATTAAT	2 cut(s)	444, 771
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	2 cut(s)	323, 590
XceI	RCATGY	2 cut(s)	347, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XspI	CTAG	2 cut(s)	165, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.