Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020490

Physical Location & Seq

Genomic Coordinates Forward (+)

24532446 .. 24533202

Gene Structure 757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGAGCCGCGATTGGGTGAAGCTGGCGGACAAGGAGGTCAAGATTTACGATTACATGATCAGCTGTAAGGACATGGTTTTGCCTTGGAGCTCCGATTTGGGGAAGATTGAGGAGTTCATGGCGGAGAAAGGCCGTGTACTCAAGAAAATGTACTCAGATTTGGATGTGGTTTGTGGGAATGTGTTGACTGTGAGTCAGGCGCAGAATTTGATTCAGGCTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCTGGCTCCATTTGTACTACTCAAGAGGTTTGCGTCGGCGGCAGGGGACAGGCAACTGCTGTTTACAAGGTTGCATCTGTTGCTTCACAAAGTGGTGTGCCTGTTCAACGAAGGTATGCTAGCTTCTTTATCATCGATCTTTGTCATCTTAGGTTTTCTGGGTATTCTTTTTTTTTTTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

8.27

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	43 - 119	4.4e-24	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0020490)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110561 RchiOBHm_Chr4g0408151 RchiOBHm_Chr5g0022661 RchiOBHm_Chr6g0267731
rosa_multiflora	Rmu_sc0000847.1_g000009
rosa_roxburghii	Rroxscaffold_5G00366620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccII	CGCG	1 cut(s)	12
AciI	CCGC	4 cut(s)	10, 29, 125, 291
AcsI	RAATTY	1 cut(s)	208
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	3 cut(s)	141, 155, 268
AfiI	CCNNNNNNNGG	2 cut(s)	16, 102
AgsI	TTSAA	1 cut(s)	359
AhdI	GACNNNNNGTC	1 cut(s)	195
AluBI	AGCT	4 cut(s)	25, 66, 93, 375
AluI	AGCT	4 cut(s)	25, 66, 93, 375
Alw21I	GWGCWC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	95
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
Bbv12I	GWGCWC	1 cut(s)	95
BccI	CCATC	2 cut(s)	224, 241
BceAI	ACGGC	1 cut(s)	120
BclI	TGATCA	1 cut(s)	60
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	2 cut(s)	10, 292
BlsI	GCNGC	2 cut(s)	11, 293
BmeRI	GACNNNNNGTC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	1 cut(s)	335
BmtI	GCTAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	128, 258
Bsa29I	ATCGAT	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 102
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	172, 252
BseLI	CCNNNNNNNGG	2 cut(s)	16, 102
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	16, 102
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	60, 388
BspACI	CCGC	4 cut(s)	10, 29, 125, 291
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	170
BspDI	ATCGAT	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	259
BspOI	GCTAGC	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	60, 388
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	7, 27, 373
BstDEI	CTNAG	2 cut(s)	157, 401
BstF5I	GGATG	2 cut(s)	172, 252
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	63, 391
BstMBI	GATC	2 cut(s)	60, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 332
BstUI	CGCG	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	172, 252
Cac8I	GCNNGC	3 cut(s)	7, 27, 373
CfoI	GCGC	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	140, 154, 267
CviAII	CATG	3 cut(s)	58, 76, 121
CviJI	RGCY	8 cut(s)	9, 25, 66, 93, 135, 221, 258, 375
CviKI_1	RGCY	8 cut(s)	9, 25, 66, 93, 135, 221, 258, 375
CviQI	GTAC	3 cut(s)	140, 154, 267
DdeI	CTNAG	2 cut(s)	157, 401
DpnI	GATC	2 cut(s)	62, 390
DpnII	GATC	2 cut(s)	60, 388
DraIII	CACNNNGTG	1 cut(s)	344
DrdI	GACNNNNNNGTC	1 cut(s)	38
DriI	GACNNNNNGTC	1 cut(s)	195
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	195
EciI	GGCGGA	2 cut(s)	44, 140
Ecl136II	GAGCTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	3 cut(s)	61, 79, 124
FaiI	YATR	4 cut(s)	59, 77, 122, 369
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	57, 75, 120
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	10, 292
FokI	GGATG	2 cut(s)	179, 259
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	10, 292
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	10, 292
HaeIII	GGCC	1 cut(s)	135
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	3 cut(s)	61, 79, 124
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	196, 214
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	3 cut(s)	140, 189, 316
Hpy188I	TCNGA	2 cut(s)	97, 160
Hpy188III	TCNNGA	3 cut(s)	43, 145, 275
Hpy8I	GTNNAC	3 cut(s)	140, 189, 316
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 332
HpyF3I	CTNAG	2 cut(s)	157, 401
Hsp92II	CATG	3 cut(s)	61, 79, 124
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	60, 388
LmnI	GCTCC	3 cut(s)	90, 98, 263
LpnPI	CCDG	9 cut(s)	11, 185, 203, 207, 240, 280, 287, 366, 396
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	372
MalI	GATC	2 cut(s)	62, 390
MboI	GATC	2 cut(s)	60, 388
MboII	GAAGA	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	4 cut(s)	31, 106, 231, 271
MspA1I	CMGCKG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	291, 332
NdeII	GATC	2 cut(s)	60, 388
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	3 cut(s)	61, 79, 124
NlaIV	GGNNCC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	11, 293
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	3 cut(s)	141, 155, 268
RsaNI	GTAC	3 cut(s)	140, 154, 267
SacI	GAGCTC	1 cut(s)	95
SatI	GCNGC	2 cut(s)	10, 292
Sau3AI	GATC	2 cut(s)	60, 388
SchI	GAGTC	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	9 cut(s)	27, 42, 68, 95, 282, 324, 368, 377, 407
SfaNI	GCATC	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	143, 273
SmoI	CTYRAG	2 cut(s)	143, 273
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	4 cut(s)	10, 29, 125, 291
SspMI	CTAG	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	208
TatI	WGTACW	3 cut(s)	139, 153, 266
TauI	GCSGC	2 cut(s)	12, 294
TfiI	GAWTC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	109
XapI	RAATTY	1 cut(s)	208
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.