Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0020490

Physical Location & Seq

Genomic Coordinates Forward (+)

48540535 .. 48540843

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCGAGCCGCGATTGGGTGAAGGCGGCGGACAAGGAGGTCAAGATTTACGATTACATGATCAATCGTAAGGACATGGTTTTGCCTTGGAGCTCCGATTTGGGGAAGATTGAGGAGTTCATGGCGGAGAAAGGCCTTGTACTCAAGAAAATGTTCTCGGATTTGGATGTGGTTTGTGGGAATGTGTTGATCGTGAGTCGGGCGCAGAATTTGATTCAGCCGGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCTCGCTCCATTTGTACTACTCAAGAGGTTTGCGTCGACGCCGGGGGACAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

5.34

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	47 - 95	5.1e-12	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0020490)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110561 RchiOBHm_Chr4g0408151 RchiOBHm_Chr5g0022661 RchiOBHm_Chr6g0267731
rosa_multiflora	Rmu_sc0000847.1_g000009
rosa_roxburghii	Rroxscaffold_5G00366620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	12
AciI	CCGC	4 cut(s)	10, 26, 29, 125
AcsI	RAATTY	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	141, 268
AfiI	CCNNNNNNNGG	2 cut(s)	16, 102
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	258
AoxI	GGCC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	205
AsuC2I	CCSGG	2 cut(s)	222, 295
AsuHPI	GGTGA	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	95
BccI	CCATC	2 cut(s)	224, 241
BclI	TGATCA	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	222, 295
BcoDI	GTCTC	1 cut(s)	258
BisI	GCNGC	2 cut(s)	10, 27
BlsI	GCNGC	2 cut(s)	11, 28
Bme1390I	CCNGG	2 cut(s)	222, 295
BmrFI	CCNGG	2 cut(s)	222, 295
BpuEI	CTTGAG	2 cut(s)	128, 258
BpuMI	CCSGG	2 cut(s)	222, 295
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	86, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 102
BseDI	CCNNGG	2 cut(s)	86, 294
BseGI	GGATG	2 cut(s)	172, 252
BseLI	CCNNNNNNNGG	2 cut(s)	16, 102
BseRI	GAGGAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	221, 294
BslI	CCNNNNNNNGG	2 cut(s)	16, 102
BsmAI	GTCTC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	60, 189
BspACI	CCGC	4 cut(s)	10, 26, 29, 125
BspANI	GGCC	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	86, 294
BssMI	GATC	2 cut(s)	60, 189
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	172, 252
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	63, 192
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	60, 189
BstSCI	CCNGG	2 cut(s)	220, 293
BstUI	CGCG	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	172, 252
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	205
CseI	GACGC	2 cut(s)	274, 299
Csp6I	GTAC	2 cut(s)	140, 267
CviAII	CATG	3 cut(s)	58, 76, 121
CviJI	RGCY	4 cut(s)	9, 93, 135, 220
CviKI_1	RGCY	4 cut(s)	9, 93, 135, 220
CviQI	GTAC	2 cut(s)	140, 267
DpnI	GATC	2 cut(s)	62, 191
DpnII	GATC	2 cut(s)	60, 189
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EciI	GGCGGA	2 cut(s)	44, 140
Ecl136II	GAGCTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	86
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	3 cut(s)	61, 79, 124
FaiI	YATR	4 cut(s)	59, 77, 122, 307
FatI	CATG	3 cut(s)	57, 75, 120
FbaI	TGATCA	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	10, 27
FokI	GGATG	2 cut(s)	179, 259
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	10, 27
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	10, 27
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	221, 294
HgaI	GACGC	2 cut(s)	274, 299
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	61, 79, 124
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	196, 214
HpaII	CCGG	2 cut(s)	221, 294
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	97, 160
Hpy188III	TCNNGA	4 cut(s)	43, 145, 193, 275
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	2 cut(s)	290, 293
HpyAV	CCTTC	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	61, 79, 124
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	60, 189
LmnI	GCTCC	3 cut(s)	90, 98, 263
LpnPI	CCDG	2 cut(s)	234, 287
MalI	GATC	2 cut(s)	62, 191
MboI	GATC	2 cut(s)	60, 189
MboII	GAAGA	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	4 cut(s)	31, 106, 231, 271
MroXI	GAANNNNTTC	1 cut(s)	152
MspI	CCGG	2 cut(s)	221, 294
MspR9I	CCNGG	2 cut(s)	222, 295
MvnI	CGCG	1 cut(s)	12
NciI	CCSGG	2 cut(s)	222, 295
NdeII	GATC	2 cut(s)	60, 189
NlaIII	CATG	3 cut(s)	61, 79, 124
PceI	AGGCCT	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	11, 28
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	95
RsaI	GTAC	2 cut(s)	141, 268
RsaNI	GTAC	2 cut(s)	140, 267
SacI	GAGCTC	1 cut(s)	95
SalI	GTCGAC	1 cut(s)	287
SatI	GCNGC	2 cut(s)	10, 27
Sau3AI	GATC	2 cut(s)	60, 189
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	222, 295
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	4 cut(s)	42, 95, 282, 306
SgrDI	CGTCGACG	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	143, 273
SmoI	CTYRAG	2 cut(s)	143, 273
Sse9I	AATT	1 cut(s)	208
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	4 cut(s)	10, 26, 29, 125
SstI	GAGCTC	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	220, 293
StyI	CCWWGG	1 cut(s)	86
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	208
TatI	WGTACW	2 cut(s)	139, 266
TauI	GCSGC	2 cut(s)	12, 29
TfiI	GAWTC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	109
XapI	RAATTY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.