RchiOBHm_Chr6g0267821

Thioredoxin-like 1-2, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
24593743 .. 24599401
5659 bp
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UTR
Exon/CDS
Intron
PRQ24022

Sequence Viewer

Length: 162 bp
ATGAAATCTTGGATATGTATAGGGTTTCAGGCACAAGCATCAATCTGTGTAAGCAAAGCTATGAAATGGTGGGAGAAAACCCTAAAACTGAACACGGTTGAGATCCATTCTGCTAAGAACTCATTGATTCTTTGCATAATGCTGGTGATAGATTGGTTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

6.12

Weight (kDa)

8.99

Isoelectric Point (pI)

15.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030326)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267821 RchiOBHm_Chr6g0268401

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 97
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwI GGATC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 157
BmsI GCATC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 102
BspPI GGATC 1 cut(s) 97
BssMI GATC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
CviJI RGCY 1 cut(s) 59
CviKI_1 RGCY 1 cut(s) 59
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
FaiI YATR 4 cut(s) 16, 20, 62, 137
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 14, 128
LweI GCATC 1 cut(s) 47
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MflI RGATCY 1 cut(s) 102
NdeII GATC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 102
Sau3AI GATC 1 cut(s) 102
SetI ASST 1 cut(s) 61
SfaNI GCATC 1 cut(s) 47
SgeI CNNG 5 cut(s) 21, 41, 47, 106, 155
TaaI ACNGT 1 cut(s) 97
TfiI GAWTC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 17, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.