RchiOBHm_Chr6g0268221

Belongs to the universal ribosomal protein uL14 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030400
Physical Location & Seq
Forward (+)
25052118 .. 25052719
602 bp
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UTR
Exon/CDS
Intron
PRQ24058

Sequence Viewer

Length: 405 bp
ATGACCAAAAGAACAAAACCTCGGAGCCCCGAAAGGACGGAGTTCAGGTACTTTGAGGACAACGCTGGCGTGATTGTGAACCACAAGGGAGAGACGAAGGGATCTGTTATTACTGGGCTGATCGGGAAGGAGTGTGCAGATCAATCTCTGACCCAGAATTGCAGGTGCTACCAATGTTATCATCTGAGAGTAATAGTAGTGGTCTTTGATTTTAGTTATATGTTTCCAGTGTTGCTTTGTTATCTAGGAAGACCTTATCTTTTGATATTATATTGTGATGGATCATCTCAGTTGTGCTTAAATTTTGATTTTCGGCATTTTGAAAATTTTGTCTTATTCCAGTTTTGTCAATTTTTAAAACTTGAGCTCTGTTTCATACTTGCGTGGTTGGTTCAGGCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

134

Amino Acids

15.73

Weight (kDa)

8.03

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 17 - 51 1.6e-06 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030400)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0268221
rosa_samantha Rh6DG149800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 153
AclWI GGATC 2 cut(s) 109, 289
AcsI RAATTY 2 cut(s) 301, 325
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 109, 289
ApoI RAATTY 2 cut(s) 301, 325
BanII GRGCYC 2 cut(s) 29, 369
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 369
BccI CCATC 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bse1I ACTGG 3 cut(s) 118, 227, 340
BseDI CCNNGG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 176, 302
BseNI ACTGG 3 cut(s) 118, 227, 340
BsgI GTGCAG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 29, 369
Bsp143I GATC 4 cut(s) 101, 120, 139, 281
BspCNI CTCAG 2 cut(s) 177, 301
BspLI GGNNCC 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 2 cut(s) 109, 289
BsrI ACTGG 3 cut(s) 118, 227, 340
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 4 cut(s) 101, 120, 139, 281
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 185, 288
BstKTI GATC 4 cut(s) 104, 123, 142, 284
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 101, 120, 139, 281
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 49
CviJI RGCY 4 cut(s) 27, 118, 367, 398
CviKI_1 RGCY 4 cut(s) 27, 118, 367, 398
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 2 cut(s) 185, 288
DpnI GATC 4 cut(s) 103, 122, 141, 283
DpnII GATC 4 cut(s) 101, 120, 139, 281
DraI TTTAAA 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 2 cut(s) 29, 369
Eco53kI GAGCTC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 367
EcoT38I GRGCYC 2 cut(s) 29, 369
Esp3I CGTCTC 1 cut(s) 86
FaiI YATR 4 cut(s) 219, 221, 271, 377
FriOI GRGCYC 2 cut(s) 29, 369
FspBI CTAG 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 24, 150, 186
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 91, 121
HpyCH4V TGCA 2 cut(s) 137, 162
HpyF3I CTNAG 2 cut(s) 185, 288
Kzo9I GATC 4 cut(s) 101, 120, 139, 281
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 8 cut(s) 31, 51, 99, 148, 167, 240, 353, 380
MaeI CTAG 1 cut(s) 245
MalI GATC 4 cut(s) 103, 122, 141, 283
MboI GATC 4 cut(s) 101, 120, 139, 281
MboII GAAGA 1 cut(s) 261
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 2 cut(s) 29, 369
MluCI AATT 4 cut(s) 157, 301, 325, 350
MnlI CCTC 2 cut(s) 30, 49
MseI TTAA 2 cut(s) 299, 356
NdeII GATC 4 cut(s) 101, 120, 139, 281
NlaIV GGNNCC 1 cut(s) 26
PaqCI CACCTGC 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 299, 356
Sau3AI GATC 4 cut(s) 101, 120, 139, 281
SduI GDGCHC 2 cut(s) 29, 369
SetI ASST 5 cut(s) 22, 50, 167, 256, 369
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 4 cut(s) 157, 301, 325, 350
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 369
TasI AATT 4 cut(s) 157, 301, 325, 350
Tru1I TTAA 2 cut(s) 299, 356
Tru9I TTAA 2 cut(s) 299, 356
TscAI CASTG 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 364
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 234
XapI RAATTY 2 cut(s) 301, 325
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.