Rh6DG149800

Belongs to the universal ribosomal protein uL14 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0030400
Physical Location & Seq
Forward (+)
21682054 .. 21705059
23006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG149800.1

Sequence Viewer

Length: 243 bp
ATGACCAAAAGAACAAAACCTCGGAGCGCCGAAAGGACGGAGTTCAGGTACTTTGAGGACAACGCCGGCGTGATTGTGAACCACAAGGGAGAGACGAAGGGATCTGTTATTACTGGGCTGATCGGGAAGGAGTGCGCAGATCGATCTCTGGCCCAGAATTCTCTTTCTGACATGGGAAGGTTGGAGGACCTCACAGAAGCTCTCTCTGACATAGGAAGGTTTGAGGACCTCCAGAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Pre-SET Ribosomal_L14 SET WIYLD

Protein Analysis

80

Amino Acids

8.95

Weight (kDa)

5.8

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L14 PF00238 17 - 50 4e-07 Ribosomal protein L14p/L23e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030400)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0268221
rosa_samantha Rh6DG149800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 136
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 1 cut(s) 50
AluBI AGCT 2 cut(s) 200, 238
AluI AGCT 2 cut(s) 200, 238
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 109
AoxI GGCC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 157
AspLEI GCGC 2 cut(s) 29, 137
AspS9I GGNCC 3 cut(s) 151, 187, 226
AvaII GGWCC 2 cut(s) 187, 226
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 30
Bme18I GGWCC 2 cut(s) 187, 226
BmgT120I GGNCC 3 cut(s) 151, 187, 226
BmrI ACTGGG 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 118
BshFI GGCC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 142
BsiSI CCGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 4 cut(s) 101, 120, 139, 143
BspANI GGCC 1 cut(s) 152
BspDI ATCGAT 1 cut(s) 142
BspPI GGATC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 4 cut(s) 101, 120, 139, 143
BstC8I GCNNGC 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 29, 137
BstKTI GATC 4 cut(s) 104, 123, 142, 146
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 101, 120, 139, 143
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 142
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 2 cut(s) 29, 137
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 151, 187, 226
ClaI ATCGAT 1 cut(s) 142
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 118, 152, 200, 238
CviKI_1 RGCY 4 cut(s) 118, 152, 200, 238
CviQI GTAC 1 cut(s) 49
DpnI GATC 4 cut(s) 103, 122, 141, 145
DpnII GATC 4 cut(s) 101, 120, 139, 143
Eco47I GGWCC 2 cut(s) 187, 226
EcoO109I RGGNCCY 2 cut(s) 187, 226
EcoRI GAATTC 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 173, 212
FatI CATG 1 cut(s) 171
FspBI CTAG 1 cut(s) 241
FspI TGCGCA 1 cut(s) 136
GlaI GCGC 2 cut(s) 28, 136
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 66
HhaI GCGC 2 cut(s) 29, 137
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 2 cut(s) 27, 135
HinP1I GCGC 2 cut(s) 27, 135
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 24, 169, 208
Hpy188III TCNNGA 2 cut(s) 124, 232
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 4 cut(s) 91, 121, 171, 210
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 2 cut(s) 27, 135
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 101, 120, 139, 143
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 31, 79, 99, 134, 167
MaeI CTAG 1 cut(s) 241
MalI GATC 4 cut(s) 103, 122, 141, 145
MboI GATC 4 cut(s) 101, 120, 139, 143
MflI RGATCY 1 cut(s) 101
MluCI AATT 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 6 cut(s) 30, 49, 178, 200, 217, 239
MreI CGCCGGCG 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 65
MspI CCGG 1 cut(s) 66
NaeI GCCGGC 1 cut(s) 67
NdeII GATC 4 cut(s) 101, 120, 139, 143
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 175
NsbI TGCGCA 1 cut(s) 136
PdiI GCCGGC 1 cut(s) 67
PpuMI RGGWCCY 2 cut(s) 187, 226
Psp5II RGGWCCY 2 cut(s) 187, 226
PspPI GGNCC 3 cut(s) 151, 187, 226
PspPPI RGGWCCY 2 cut(s) 187, 226
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
Sau3AI GATC 4 cut(s) 101, 120, 139, 143
Sau96I GGNCC 3 cut(s) 151, 187, 226
SetI ASST 8 cut(s) 22, 50, 182, 192, 202, 221, 231, 240
SgrAI CRCCGGYG 1 cut(s) 65
SinI GGWCC 2 cut(s) 187, 226
Sse9I AATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 241
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 187, 226
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.