RchiOBHm_Chr6g0275891

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030315
Physical Location & Seq
Reverse (-)
37853378 .. 37853641
264 bp
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UTR
Exon/CDS
Intron
PRQ24751

Sequence Viewer

Length: 264 bp
ATGGCTTCTAGGAGTACTAGTAGCAGTGACACTACTAGAACCAGCTCTCCTTCTGGAGCATTCAAGTTTCTGAGGAGGAAGTGCGCCTCTTATTGCATATTTGCTTCTTACTTTTTCTCCCAACAATGGCCGGCTCGATTTGCTGCCATTCACAAAGTGTTTGGGGCTAGCAATGTCTCCAAGTTGTTGCTTCATGTCCTTGTCCATGATCAACCTACAGCGATTGTCACAATGGCATATGAAGTTTGCATAGTTAAAGATTAA

Protein Analysis

87

Amino Acids

9.67

Weight (kDa)

9.66

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 20 - 84 1.4e-16 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030315)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0275891
rosa_multiflora Rmu_sc0002030.1_g000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 181
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 130
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 4 cut(s) 9, 18, 36, 168
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmcAI AGTACT 1 cut(s) 16
BmtI GCTAGC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 75
BsaXI ACNNNNNCTCC 5 cut(s) 31, 34, 61, 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssMI GATC 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 132, 169
BstDEI CTNAG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 132, 169
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 130
Csp6I GTAC 1 cut(s) 15
CviAII CATG 2 cut(s) 194, 206
CviJI RGCY 5 cut(s) 5, 45, 130, 134, 167
CviKI_1 RGCY 5 cut(s) 5, 45, 130, 134, 167
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraIII CACNNNGTG 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 128
FaeI CATG 2 cut(s) 197, 209
FaiI YATR 6 cut(s) 98, 195, 207, 238, 240, 251
FatI CATG 2 cut(s) 193, 205
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 4 cut(s) 9, 18, 36, 168
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 130
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 197, 209
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 96, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 197, 209
HspAI GCGC 1 cut(s) 84
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 3 cut(s) 39, 55, 144
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 4 cut(s) 9, 18, 36, 168
MaeIII GTNAC 2 cut(s) 26, 226
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MnlI CCTC 3 cut(s) 66, 69, 97
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 2 cut(s) 255, 262
MspI CCGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 140
NaeI GCCGGC 1 cut(s) 132
NdeI CATATG 1 cut(s) 238
NdeII GATC 1 cut(s) 208
NgoMIV GCCGGC 1 cut(s) 130
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 2 cut(s) 197, 209
NmuCI GTSAC 2 cut(s) 26, 226
PctI GAATGC 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 145
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 255, 262
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 16
SetI ASST 2 cut(s) 47, 217
SfcI CTRYAG 1 cut(s) 216
SpeI ACTAGT 1 cut(s) 17
SspMI CTAG 4 cut(s) 9, 18, 36, 168
TaqI TCGA 1 cut(s) 136
TatI WGTACW 1 cut(s) 14
Tru1I TTAA 2 cut(s) 255, 262
Tru9I TTAA 2 cut(s) 255, 262
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 26, 226
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 26, 226
TspDTI ATGAA 2 cut(s) 182, 255
TspRI CASTG 1 cut(s) 31
XspI CTAG 4 cut(s) 9, 18, 36, 168
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.