Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002030.1

Orthogroup ID

OG0030315

Physical Location & Seq

Genomic Coordinates Reverse (-)

94757 .. 95020

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002030.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atggcttctaggagtactagtagcagtgacactactggaactagttctccttctggagcattcaaggttctgaggaggaagtgcgcctcttattgcatatttgcttcttactttttctcccaacaatggccggttcgatttgctgctattcacaaagtgtttggggctagcaatgtctccaagttgttgcttcatgtccttgtccatgatcaacctacagcgattgtcacaatggcatatgaagtttgcataattaaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

87

Amino Acids

9.56

Weight (kDa)

9.45

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030315)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275891
rosa_multiflora	Rmu_sc0002030.1_g000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	64
AhlI	ACTAGT	2 cut(s)	17, 41
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
Alw26I	GTCTC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	181
BcuI	ACTAGT	2 cut(s)	17, 41
BfaI	CTAG	4 cut(s)	9, 18, 42, 168
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmcAI	AGTACT	1 cut(s)	16
BmtI	GCTAGC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 34, 61, 101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	63
BspOI	GCTAGC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	130
BssMI	GATC	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	2 cut(s)	194, 206
CviJI	RGCY	3 cut(s)	5, 130, 167
CviKI_1	RGCY	3 cut(s)	5, 130, 167
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraIII	CACNNNGTG	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	128
FaeI	CATG	2 cut(s)	197, 209
FaiI	YATR	6 cut(s)	98, 195, 207, 238, 240, 251
FatI	CATG	2 cut(s)	193, 205
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	4 cut(s)	9, 18, 42, 168
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	197, 209
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	96, 249
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	197, 209
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	3 cut(s)	21, 39, 144
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	4 cut(s)	9, 18, 42, 168
MaeIII	GTNAC	2 cut(s)	26, 226
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MluCI	AATT	1 cut(s)	252
MnlI	CCTC	3 cut(s)	66, 69, 97
MroXI	GAANNNNTTC	1 cut(s)	43
MseI	TTAA	2 cut(s)	255, 262
MspI	CCGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	59
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	208
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	197, 209
NmuCI	GTSAC	2 cut(s)	26, 226
PctI	GAATGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	145
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	255, 262
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	16
SetI	ASST	2 cut(s)	69, 217
SfcI	CTRYAG	1 cut(s)	216
SpeI	ACTAGT	2 cut(s)	17, 41
Sse9I	AATT	1 cut(s)	252
SspMI	CTAG	4 cut(s)	9, 18, 42, 168
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	252
TatI	WGTACW	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	255, 262
Tru9I	TTAA	2 cut(s)	255, 262
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	26, 226
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	26, 226
TspDTI	ATGAA	2 cut(s)	182, 255
TspRI	CASTG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	4 cut(s)	9, 18, 42, 168
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.