Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030401

Physical Location & Seq

Genomic Coordinates Forward (+)

43557287 .. 43557802

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCACAATTGGAAAGTCAGAGTCTTCTTTTTACCTCTGTCTTTTGCGTCTTACAGTGCATTTTCTCTTAGGAGTGCTAGGCTCACACTCATTGAGTGGCTCACCCTGCTCCTCACCCTCCTCATCTCAACCCTCACCGCCCCCTCCTCCGCCGCCACCTTCAACTGCACTACCCCCTCCGCCAATTCCACCTGCCAATCCCTCATCGACTTCGCCCCCACAAACGCCACCACTCTCAACGCCGTCAAGACCCTCTTCAACATCACCCACCTCCGCACCTTACTCGGAGCCAACAACCTCCCCCTCTCGACCCGAACCGACGAACCCGTCACGGCCAACCGGAAGCTCCGAATCCCCTTCTCCTGCCGCTGCTTCAACGGCTCCAGCGTCTCCTACCGCCGCCCCCAGTACATCGTCAAGGCCGGCGTCAGTGGCATACCCGACCCGAATAAGATCGAGGTCGGGCAGAAGCTGTGGATCCCACTGCCGTGTAGCTGCGACAAAGTGGACGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008061 GO:0008144 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

171

Amino Acids

18.81

Weight (kDa)

9.65

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030401)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0280231
rosa_samantha	Rh6DG237700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	200
AasI	GACNNNNNNGTC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	200
AciI	CCGC	8 cut(s)	138, 150, 153, 180, 274, 367, 397, 400
AclWI	GGATC	2 cut(s)	472, 485
AcoI	YGGCCR	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	163, 259, 376
AleI	CACNNNNGTG	1 cut(s)	487
AluBI	AGCT	3 cut(s)	346, 472, 495
AluI	AGCT	3 cut(s)	346, 472, 495
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	472, 485
AlwNI	CAGNNNCTG	1 cut(s)	472
AoxI	GGCC	2 cut(s)	333, 420
ApeKI	GCWGC	2 cut(s)	369, 495
AsuHPI	GGTGA	4 cut(s)	94, 106, 127, 256
BamHI	GGATCC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	356, 482
BceAI	ACGGC	4 cut(s)	227, 348, 394, 472
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	78, 514
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	5 cut(s)	153, 367, 370, 400, 496
BlsI	GCNGC	5 cut(s)	154, 368, 371, 401, 497
BmiI	GGNNCC	3 cut(s)	289, 382, 479
BmrI	ACTGGG	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	339
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	406
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	3 cut(s)	101, 110, 136
BseXI	GCAGC	2 cut(s)	356, 482
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	335, 422
BsiSI	CCGG	2 cut(s)	340, 423
BsmAI	GTCTC	1 cut(s)	394
BsmBI	CGTCTC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	335, 422
Bsp143I	GATC	2 cut(s)	453, 477
BspACI	CCGC	8 cut(s)	138, 150, 153, 180, 274, 367, 397, 400
BspANI	GGCC	2 cut(s)	335, 422
BspLI	GGNNCC	3 cut(s)	289, 382, 479
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	472, 485
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	422
BssMI	GATC	2 cut(s)	453, 477
BssNI	GRCGYC	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	456, 480
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	453, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 378, 432
BstV1I	GCAGC	2 cut(s)	356, 482
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	335, 422
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	3 cut(s)	61, 436, 482
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	422
CseI	GACGC	3 cut(s)	36, 376, 415
Csp6I	GTAC	1 cut(s)	409
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	455, 479
DpnII	GATC	2 cut(s)	453, 477
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	2 cut(s)	139, 169
Esp3I	CGTCTC	1 cut(s)	394
FaiI	YATR	1 cut(s)	437
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
Fnu4HI	GCNGC	5 cut(s)	153, 367, 370, 400, 496
Fsp4HI	GCNGC	5 cut(s)	153, 367, 370, 400, 496
FspBI	CTAG	2 cut(s)	78, 514
GluI	GCNGC	5 cut(s)	153, 367, 370, 400, 496
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	335, 422
HapII	CCGG	2 cut(s)	340, 423
HgaI	GACGC	3 cut(s)	36, 376, 415
Hin1I	GRCGYC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	21, 351
HpaII	CCGG	2 cut(s)	340, 423
HphI	GGTGA	4 cut(s)	94, 106, 127, 256
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	20, 287, 350
Hpy188III	TCNNGA	2 cut(s)	247, 307
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	169, 367
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	4, 59, 168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 378, 432
HpyF3I	CTNAG	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	426
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	453, 477
LmnI	GCTCC	4 cut(s)	114, 287, 351, 386
LpnPI	CCDG	7 cut(s)	119, 205, 353, 376, 397, 419, 436
Lsp1109I	GCAGC	2 cut(s)	356, 482
MaeI	CTAG	2 cut(s)	78, 514
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	455, 479
MboI	GATC	2 cut(s)	453, 477
MboII	GAAGA	2 cut(s)	16, 247
MfeI	CAATTG	1 cut(s)	7
MflI	RGATCY	1 cut(s)	477
MluCI	AATT	2 cut(s)	7, 184
MlyI	GAGTC	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	487
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	2 cut(s)	340, 423
MunI	CAATTG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	106, 378, 432
NaeI	GCCGGC	1 cut(s)	424
NdeII	GATC	2 cut(s)	453, 477
NgoMIV	GCCGGC	1 cut(s)	422
NlaIV	GGNNCC	3 cut(s)	289, 382, 479
NmuCI	GTSAC	1 cut(s)	328
OliI	CACNNNNGTG	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	5 cut(s)	154, 368, 371, 401, 497
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PspN4I	GGNNCC	3 cut(s)	289, 382, 479
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	487
SatI	GCNGC	5 cut(s)	153, 367, 370, 400, 496
Sau3AI	GATC	2 cut(s)	453, 477
SchI	GAGTC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	487
Sse9I	AATT	2 cut(s)	7, 184
SsiI	CCGC	8 cut(s)	138, 150, 153, 180, 274, 367, 397, 400
SspMI	CTAG	2 cut(s)	78, 514
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	207, 308, 456
TasI	AATT	2 cut(s)	7, 184
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	3 cut(s)	155, 369, 402
TfiI	GAWTC	1 cut(s)	351
TscAI	CASTG	3 cut(s)	61, 436, 489
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	369, 495
Tsp45I	GTSAC	1 cut(s)	328
TspRI	CASTG	3 cut(s)	61, 436, 489
XspI	CTAG	2 cut(s)	78, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.