Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0030401

Physical Location & Seq

Genomic Coordinates Forward (+)

42297377 .. 42298592

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG237700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCTGCTTCAGCTACCTGGTGGAGGTCGTGGGAAGGTTTTTGGGGAGCGTGCATTTTCTCTTAGGAGTGCTAGGCTCACACTCATTGAGTGGCTCACCCTGCTCCTCACCCTCCTCATCTCAACCCTCACCGCCCCCTCCTCCGCCGCCACCTTCAACTGCACTACCCCCTCCGCCAATTCCACCTGCCAATCCCTCATCGACTTCGCCCCCACAAACGCCACCACTCTCAACGCCGTCAAGACCCTCTTCAACATCACCCACCTCCGCACCTTACTCGGAGCCAACAACCTCCCCCTCTCGACCCGAACCGACGAACCCGTCACGGCCAACCGGAAGCTCCGAATCCCCTTCTCCTGCCGCTGCTTCAACGGCTCCAGCGTCTCCTACCGCCGCCCCCAGTACATCGTCAAGGCCGGCGTCAGTGGCATACCCGACCCGAATAAGATCGAGGTCGGGCAGAAGCTGTGGATCCCACTGCCGTGTAGCTGCGACAAAGTGGACGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008061 GO:0008144 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

169

Amino Acids

18.29

Weight (kDa)

9.69

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030401)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0280231
rosa_samantha	Rh6DG237700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
AasI	GACNNNNNNGTC	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	194
AciI	CCGC	8 cut(s)	132, 144, 147, 174, 268, 361, 391, 394
AclWI	GGATC	2 cut(s)	466, 479
AcoI	YGGCCR	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	157, 253, 370
AjnI	CCWGG	1 cut(s)	16
AleI	CACNNNNGTG	1 cut(s)	481
AluBI	AGCT	4 cut(s)	13, 340, 466, 489
AluI	AGCT	4 cut(s)	13, 340, 466, 489
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	466, 479
AlwNI	CAGNNNCTG	1 cut(s)	466
AoxI	GGCC	2 cut(s)	327, 414
ApeKI	GCWGC	3 cut(s)	4, 363, 489
AsuHPI	GGTGA	4 cut(s)	88, 100, 121, 250
BamHI	GGATCC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	350, 476
BceAI	ACGGC	4 cut(s)	221, 342, 388, 466
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	72, 508
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	6 cut(s)	5, 147, 361, 364, 394, 490
BlsI	GCNGC	6 cut(s)	6, 148, 362, 365, 395, 491
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	3 cut(s)	283, 376, 473
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	3 cut(s)	95, 104, 130
BseXI	GCAGC	2 cut(s)	350, 476
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	329, 416
BsiSI	CCGG	2 cut(s)	334, 417
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	388
BsmBI	CGTCTC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	329, 416
Bsp143I	GATC	2 cut(s)	447, 471
BspACI	CCGC	8 cut(s)	132, 144, 147, 174, 268, 361, 391, 394
BspANI	GGCC	2 cut(s)	329, 416
BspLI	GGNNCC	3 cut(s)	283, 376, 473
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	466, 479
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	416
BssMI	GATC	2 cut(s)	447, 471
BssNI	GRCGYC	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	51, 418
BstDEI	CTNAG	1 cut(s)	62
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	450, 474
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	447, 471
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 100, 372, 426
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	350, 476
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	329, 416
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	2 cut(s)	430, 476
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	51, 418
CaiI	CAGNNNCTG	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	416
CseI	GACGC	2 cut(s)	370, 409
CsiI	ACCWGGT	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	403
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	2 cut(s)	449, 473
DpnII	GATC	2 cut(s)	447, 471
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	2 cut(s)	133, 163
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	388
FaiI	YATR	1 cut(s)	431
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
Fnu4HI	GCNGC	6 cut(s)	5, 147, 361, 364, 394, 490
Fsp4HI	GCNGC	6 cut(s)	5, 147, 361, 364, 394, 490
FspBI	CTAG	2 cut(s)	72, 508
GluI	GCNGC	6 cut(s)	5, 147, 361, 364, 394, 490
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	329, 416
HapII	CCGG	2 cut(s)	334, 417
HgaI	GACGC	2 cut(s)	370, 409
Hin1I	GRCGYC	1 cut(s)	420
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	2 cut(s)	334, 417
HphI	GGTGA	4 cut(s)	88, 100, 121, 250
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	281, 344
Hpy188III	TCNNGA	2 cut(s)	241, 301
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	28, 163, 361
HpyCH4V	TGCA	2 cut(s)	53, 162
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 100, 372, 426
HpyF3I	CTNAG	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	420
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	447, 471
LmnI	GCTCC	5 cut(s)	46, 108, 281, 345, 380
LpnPI	CCDG	9 cut(s)	3, 30, 113, 199, 347, 370, 391, 413, 430
Lsp1109I	GCAGC	2 cut(s)	350, 476
MabI	ACCWGGT	1 cut(s)	16
MaeI	CTAG	2 cut(s)	72, 508
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	449, 473
MboI	GATC	2 cut(s)	447, 471
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	1 cut(s)	471
MluCI	AATT	1 cut(s)	178
MroNI	GCCGGC	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	481
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	2 cut(s)	334, 417
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	10, 100, 372, 426
NaeI	GCCGGC	1 cut(s)	418
NdeII	GATC	2 cut(s)	447, 471
NgoMIV	GCCGGC	1 cut(s)	416
NlaIV	GGNNCC	3 cut(s)	283, 376, 473
NmuCI	GTSAC	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	345
PkrI	GCNGC	6 cut(s)	6, 148, 362, 365, 395, 491
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	283, 376, 473
PstNI	CAGNNNCTG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	471
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	481
SatI	GCNGC	6 cut(s)	5, 147, 361, 364, 394, 490
Sau3AI	GATC	2 cut(s)	447, 471
ScrFI	CCNGG	1 cut(s)	18
SexAI	ACCWGGT	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	481
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	8 cut(s)	132, 144, 147, 174, 268, 361, 391, 394
SspMI	CTAG	2 cut(s)	72, 508
StyD4I	CCNGG	1 cut(s)	16
TaqI	TCGA	3 cut(s)	201, 302, 450
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	3 cut(s)	149, 363, 396
TfiI	GAWTC	1 cut(s)	345
TscAI	CASTG	2 cut(s)	430, 483
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	3 cut(s)	4, 363, 489
Tsp45I	GTSAC	1 cut(s)	322
TspRI	CASTG	2 cut(s)	430, 483
XagI	CCTNNNNNAGG	1 cut(s)	21
XspI	CTAG	2 cut(s)	72, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.