RchiOBHm_Chr6g0280601

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0022734
Physical Location & Seq
Reverse (-)
43994663 .. 43996707
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25162

Sequence Viewer

Length: 228 bp
ATGGATGGAGAAAGGAAGATATGTATAATCCATGAAGAGACTTCCTATTCATTGACTTATATAAGGAGCTTTCCTTTCACTTATTTTCAGTGTTTTTTGAATAATATGATTTATTACTTGGTCTTTCAGGGTTTGTTAGAAGGAGTTGGTCATCCATTTACTAGGAACTTCCATTTTATTGATTCACTGAAAGCATACCTATCAATCTATCATATGCTTTGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

75

Amino Acids

8.99

Weight (kDa)

6.38

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022734)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0419081 RchiOBHm_Chr6g0280601 RchiOBHm_Chr6g0288961
rosa_samantha Rh2DG422800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 162, 226
BseGI GGATG 2 cut(s) 10, 151
BsmAI GTCTC 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 30
BstF5I GGATG 2 cut(s) 10, 151
BstMAI GTCTC 1 cut(s) 32
BtsCI GGATG 2 cut(s) 10, 151
BtsIMutI CAGTG 2 cut(s) 95, 185
CviAII CATG 1 cut(s) 32
CviJI RGCY 1 cut(s) 69
CviKI_1 RGCY 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
FaeI CATG 1 cut(s) 35
FaiI YATR 9 cut(s) 22, 26, 33, 60, 62, 107, 196, 213, 215
FatI CATG 1 cut(s) 31
FauNDI CATATG 1 cut(s) 213
FokI GGATG 2 cut(s) 17, 138
FspBI CTAG 2 cut(s) 162, 226
Hin1II CATG 1 cut(s) 35
HinfI GANTC 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 35
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 1 cut(s) 113
MaeI CTAG 2 cut(s) 162, 226
MboII GAAGA 2 cut(s) 28, 47
NdeI CATATG 1 cut(s) 213
NlaIII CATG 1 cut(s) 35
PfeI GAWTC 1 cut(s) 182
SetI ASST 2 cut(s) 71, 201
SgeI CNNG 4 cut(s) 44, 130, 140, 174
SspMI CTAG 2 cut(s) 162, 226
TfiI GAWTC 1 cut(s) 182
TscAI CASTG 2 cut(s) 95, 192
TspDTI ATGAA 2 cut(s) 39, 48
TspRI CASTG 2 cut(s) 95, 192
XspI CTAG 2 cut(s) 162, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.