RchiOBHm_Chr6g0288961

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0022734
Physical Location & Seq
Forward (+)
52110283 .. 52110619
337 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25924

Sequence Viewer

Length: 237 bp
ATGAAGATGACTTCCTATTCATTGACTTATATAAGGAGCTTTCCTTTTACTTATTTTCAGTGTTTTTTGAATAATATGATTTATTACTTGGTCTCTCAGGGTTTGTTGGAAGGAGTTGGTCATCCATTTACTAGGAACTTCCATTTTATTGATTCACTGTGTACTTACACGTACTTACATAAGCATTTGCCAAGCATAATTAGCTATAATGAGCCACGCTCATGCTACCGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0002376 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0040007 GO:0042742 GO:0043086 GO:0043087 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0051704 GO:0051707 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0097708 GO:0098542 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

78

Amino Acids

9.4

Weight (kDa)

8.86

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022734)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0419081 RchiOBHm_Chr6g0280601 RchiOBHm_Chr6g0288961
rosa_samantha Rh2DG422800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AfaI GTAC 2 cut(s) 163, 173
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 2 cut(s) 39, 204
AluI AGCT 2 cut(s) 39, 204
Alw26I GTCTC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BsaAI YACGTR 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 97
BspACI CCGC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 65, 155
Csp6I GTAC 2 cut(s) 162, 172
CviAII CATG 1 cut(s) 222
CviJI RGCY 3 cut(s) 39, 204, 214
CviKI_1 RGCY 3 cut(s) 39, 204, 214
CviQI GTAC 2 cut(s) 162, 172
DdeI CTNAG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 97
FaeI CATG 1 cut(s) 225
FaiI YATR 7 cut(s) 30, 32, 77, 180, 197, 207, 223
FatI CATG 1 cut(s) 221
FokI GGATG 1 cut(s) 108
FspBI CTAG 1 cut(s) 132
Hin1II CATG 1 cut(s) 225
HinfI GANTC 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 1 cut(s) 225
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 1 cut(s) 83
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 170
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 201
NlaIII CATG 1 cut(s) 225
PfeI GAWTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 171
RsaI GTAC 2 cut(s) 163, 173
RsaNI GTAC 2 cut(s) 162, 172
RseI CAYNNNNRTG 1 cut(s) 220
SetI ASST 3 cut(s) 41, 173, 206
SgeI CNNG 6 cut(s) 100, 110, 144, 181, 204, 228
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 1 cut(s) 198
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 173
TasI AATT 1 cut(s) 198
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 1 cut(s) 152
TscAI CASTG 2 cut(s) 65, 162
TspDTI ATGAA 2 cut(s) 9, 17
TspRI CASTG 2 cut(s) 65, 162
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.