Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030409

Physical Location & Seq

Genomic Coordinates Reverse (-)

44141112 .. 44142764

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTTTGGGTCCAACAAGTAACTCTAATGACGTCGCTGTACAATATCTATTCGACCCCAATGTCTTTTTGCTCTGATGCGAGGTCACTTTATGATGTGAGATCAGTTTTCTCCGAGGCGCCAATGAAGAAAAGTCTCAGTGCAAAGAAGCGTTCAGAATTCGGGGCAGAAAAGCCTCAGGTCTATCACAAGCACCAACAACAGCCAGGATTTCGTTTCCCAAACTTTCGGCACCAAAGCTCTCGTCGCCAAAACTTCACTACCCAAAACTCCCACCGTCGAAAGTTTCTTCAGAAATGCAATTTCACCGGAAAAGAGAGAAAAAATACATTGGGGTCAAATAGATATTGTACAGCGACTTCATTAGAGTTACTTGTTGGACCCAAACCATTCAACCACCGACCAAAGTTGAACTCACTGGCTTCCTCCTCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1221 Pkinase_Tyr

Protein Analysis

145

Amino Acids

16.9

Weight (kDa)

10.48

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0280721
rosa_wichuraiana	Rw6G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AatII	GACGTC	1 cut(s)	35
AccB1I	GGYRCC	2 cut(s)	118, 231
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	2 cut(s)	32, 119
AfaI	GTAC	2 cut(s)	41, 352
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	394, 412
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	10, 380
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	10, 380
AxyI	CCTNAGG	1 cut(s)	177
BanI	GGYRCC	2 cut(s)	118, 231
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	10, 380
BmgT120I	GGNCC	2 cut(s)	10, 380
BmiI	GGNNCC	4 cut(s)	11, 120, 233, 382
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	32, 119
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	423
Bse21I	CCTNAGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	151, 191
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	418
BshNI	GGYRCC	2 cut(s)	118, 231
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	140
Bsp1407I	TGTACA	2 cut(s)	39, 350
Bsp143I	GATC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	150, 190
BspLI	GGNNCC	4 cut(s)	11, 120, 233, 382
BspT107I	GGYRCC	2 cut(s)	118, 231
BsrGI	TGTACA	2 cut(s)	39, 350
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	101
BssNI	GRCGYC	2 cut(s)	32, 119
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	278
BstACI	GRCGYC	2 cut(s)	32, 119
BstAUI	TGTACA	2 cut(s)	39, 350
BstDEI	CTNAG	2 cut(s)	137, 177
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
Bsu36I	CCTNAGG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	145, 416
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	10, 380
Csp6I	GTAC	2 cut(s)	40, 351
CviAII	CATG	1 cut(s)	432
CviJI	RGCY	4 cut(s)	175, 205, 240, 422
CviKI_1	RGCY	4 cut(s)	175, 205, 240, 422
CviQI	GTAC	2 cut(s)	40, 351
DdeI	CTNAG	2 cut(s)	137, 177
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	10, 380
Eco57I	CTGAAG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	177
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
FaeI	CATG	1 cut(s)	435
FaiI	YATR	2 cut(s)	93, 433
FatI	CATG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	122
HapII	CCGG	1 cut(s)	309
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	2 cut(s)	32, 119
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	298
Hpy188I	TCNGA	4 cut(s)	76, 115, 157, 294
Hpy99I	CGWCG	3 cut(s)	37, 249, 282
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	143, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	137, 177
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	2 cut(s)	32, 119
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	1 cut(s)	119
KasI	GGCGCC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	101
LpnPI	CCDG	5 cut(s)	164, 192, 219, 322, 404
LweI	GCATC	1 cut(s)	67
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	19, 84, 369
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	2 cut(s)	139, 281
MluCI	AATT	2 cut(s)	158, 301
Mly113I	GGCGCC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	37, 358
MnlI	CCTC	4 cut(s)	75, 109, 186, 436
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	246
NarI	GGCGCC	1 cut(s)	119
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	4 cut(s)	11, 120, 233, 382
NmuCI	GTSAC	1 cut(s)	84
PluTI	GGCGCC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	4 cut(s)	11, 120, 233, 382
PspPI	GGNCC	2 cut(s)	10, 380
RsaI	GTAC	2 cut(s)	41, 352
RsaNI	GTAC	2 cut(s)	40, 351
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	2 cut(s)	10, 380
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	4 cut(s)	35, 86, 183, 242
SfaNI	GCATC	1 cut(s)	67
SfoI	GGCGCC	1 cut(s)	120
SinI	GGWCC	2 cut(s)	10, 380
Sse9I	AATT	2 cut(s)	158, 301
SspDI	GGCGCC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	53, 280
TasI	AATT	2 cut(s)	158, 301
TatI	WGTACW	2 cut(s)	39, 350
TscAI	CASTG	2 cut(s)	145, 423
TseFI	GTSAC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	140, 351
TspRI	CASTG	2 cut(s)	145, 423
VpaK11BI	GGWCC	2 cut(s)	10, 380
XapI	RAATTY	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.