Rw6G021370

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
42614236 .. 42614684
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G021370.1

Sequence Viewer

Length: 315 bp
ATGAAGAAAAGTCTCAGTGCAAAGAAGCGTTCGGAATTCGGGGCAGAAAAGCCTCAGGTCTATCACAAGCACCAACAACAGCAAGAATTTCGTTTCCCAAACTTTCGGCACCAAAGCTCTCGTCGCCAAAACTTCACTACCCAAAACTCCCACAGTCGAAAGTTTCTTCAGAAATGCAATTTCACCGGAAAAGAGAGAAAAAATACATTGGGGTCGAATAGATATTGTACAGCAACGTCATTGGAGTTACTTGTTGGACCCAAACCATTCAACCACCGACCAAAGTTGAACTCACTGGCTTCCTCCTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.23

Weight (kDa)

10.88

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030409)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0280721
rosa_wichuraiana Rw6G021370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AcsI RAATTY 2 cut(s) 35, 86
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 2 cut(s) 271, 289
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 35, 86
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 257
AxyI CCTNAGG 1 cut(s) 54
BanI GGYRCC 1 cut(s) 108
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BcoDI GTCTC 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 110, 259
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 300
Bse21I CCTNAGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 28, 68
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 17
Bsp1407I TGTACA 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 27, 67
BspLI GGNNCC 2 cut(s) 110, 259
BspT107I GGYRCC 1 cut(s) 108
BsrGI TGTACA 1 cut(s) 227
BsrI ACTGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 14, 54
BstMAI GTCTC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 123
Bsu36I CCTNAGG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 22, 293
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 228
CviAII CATG 1 cut(s) 309
CviJI RGCY 3 cut(s) 52, 117, 299
CviKI_1 RGCY 3 cut(s) 52, 117, 299
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 14, 54
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 35
FaeI CATG 1 cut(s) 312
FaiI YATR 1 cut(s) 310
FatI CATG 1 cut(s) 308
HapII CCGG 1 cut(s) 186
Hin1II CATG 1 cut(s) 312
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 34, 171
Hpy99I CGWCG 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 20, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 2 cut(s) 14, 54
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 1 cut(s) 312
LpnPI CCDG 3 cut(s) 41, 199, 281
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 246
MboII GAAGA 2 cut(s) 16, 158
MluCI AATT 3 cut(s) 35, 86, 178
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 63, 313
MspI CCGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIII CATG 1 cut(s) 312
NlaIV GGNNCC 2 cut(s) 110, 259
PspN4I GGNNCC 2 cut(s) 110, 259
PspPI GGNCC 1 cut(s) 257
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 257
SetI ASST 3 cut(s) 60, 119, 239
SgeI CNNG 8 cut(s) 52, 68, 79, 95, 132, 198, 263, 308
SinI GGWCC 1 cut(s) 257
Sse9I AATT 3 cut(s) 35, 86, 178
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 157, 215
TasI AATT 3 cut(s) 35, 86, 178
TatI WGTACW 1 cut(s) 227
TscAI CASTG 2 cut(s) 22, 300
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 22, 300
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 2 cut(s) 35, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.