RchiOBHm_Chr6g0281851

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025057
Physical Location & Seq
Reverse (-)
45183719 .. 45184226
508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25281

Sequence Viewer

Length: 387 bp
ATGGGCCTCTGTGTTGCATCTTGTGGGGACAACATGCTTCAGTTTCGTAGATGTCTTGCTGCTTCTTTCTTCCTCAGAGTAGCTTTAAAGCAACCTGATGGAGAATACAGGGTTTTAACATCTGATCTGGCAAATGAACTCGTTGTTCAGATTCACCCATCTTCTGTGCTGTCCCAGAAAAAACCAGAGTGCATAGTTTTCAATGAACTAGTTGAAACTAATGACAAAAGGTTTATCTGCAACACGACTAGAATCAACTATCCATGGTTAAGTGAGCTTGCTCCTCCACGACTAAAAAAGGTACTGTATGTTGATTTGACCATTTGGGAATCTTATTGTTGGCCACATAACAGGAATGAAATTATAGGATTTTGTTGTTTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

128

Amino Acids

14.79

Weight (kDa)

7.5

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_NTP_bind PF07717 16 - 95 6e-19 Oligonucleotide/oligosaccharide-binding (OB)-fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025057)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0281851
rosa_samantha Rh6AG257200 Rh6DG251500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 1 cut(s) 303
AgsI TTSAA 2 cut(s) 202, 215
AhlI ACTAGT 1 cut(s) 208
AluBI AGCT 2 cut(s) 83, 277
AluI AGCT 2 cut(s) 83, 277
AoxI GGCC 2 cut(s) 4, 341
ApeKI GCWGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 146
BalI TGGCCA 1 cut(s) 343
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 92, 166
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 2 cut(s) 209, 249
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 4
BmsI GCATC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 2 cut(s) 6, 343
BslFI GGGAC 2 cut(s) 41, 157
BsmFI GGGAC 2 cut(s) 41, 157
BsnI GGCC 2 cut(s) 6, 343
Bsp143I GATC 1 cut(s) 124
Bsp19I CCATGG 1 cut(s) 263
BspANI GGCC 2 cut(s) 6, 343
BspCNI CTCAG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 263
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 46
BsuRI GGCC 2 cut(s) 6, 343
BtgI CCRYGG 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 34, 264
CviJI RGCY 4 cut(s) 6, 83, 277, 343
CviKI_1 RGCY 4 cut(s) 6, 83, 277, 343
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DraI TTTAAA 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 2 cut(s) 37, 267
FaiI YATR 6 cut(s) 35, 194, 265, 309, 348, 365
FaqI GGGAC 2 cut(s) 41, 157
FatI CATG 2 cut(s) 33, 263
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 209, 249
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 2 cut(s) 6, 343
Hin1II CATG 2 cut(s) 37, 267
HinfI GANTC 3 cut(s) 151, 252, 329
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 77, 124, 150
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 17, 192, 240
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 2 cut(s) 37, 267
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 6 cut(s) 94, 108, 113, 188, 198, 337
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 26
MaeI CTAG 2 cut(s) 209, 249
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 2 cut(s) 61, 153
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 343
MnlI CCTC 3 cut(s) 17, 83, 294
Mox20I TGGCCA 1 cut(s) 343
MscI TGGCCA 1 cut(s) 343
MseI TTAA 4 cut(s) 86, 116, 269, 385
Msp20I TGGCCA 1 cut(s) 343
NcoI CCATGG 1 cut(s) 263
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 37, 267
NspI RCATGY 1 cut(s) 37
PfeI GAWTC 3 cut(s) 151, 252, 329
PkrI GCNGC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SaqAI TTAA 4 cut(s) 86, 116, 269, 385
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 4
SetI ASST 5 cut(s) 85, 97, 233, 279, 303
SfaNI GCATC 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 1 cut(s) 360
SspMI CTAG 2 cut(s) 209, 249
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 1 cut(s) 306
TasI AATT 1 cut(s) 360
TfiI GAWTC 3 cut(s) 151, 252, 329
Tru1I TTAA 4 cut(s) 86, 116, 269, 385
Tru9I TTAA 4 cut(s) 86, 116, 269, 385
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 150, 219, 372
XceI RCATGY 1 cut(s) 37
XspI CTAG 2 cut(s) 209, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.