RchiOBHm_Chr6g0283061

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025059
Physical Location & Seq
Reverse (-)
46289996 .. 46295076
5081 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25378

Sequence Viewer

Length: 330 bp
ATGTGCTGCCGTGTGGGTTTGTATCAGCTTCGTAAGAACAATATAATTTTCTCAGAAAGAGAGAGTGAGAGAGCGATTATGCGTTTAGGTCAATTGAGATCAGTCAAAGAGAGACAGTGTACAGCTTATCATGTCCAAGGGGAGCAAATCTTTTCCATTTTAAGAGAAACTGGAGGATCCGACCCGGGATACAATTCCGATGATTCAGTTAAGGACCCAAGTTACAGCACTCTTGAAGAAATCCATGCCCAGTTCTCAAAGCTCTCTATCAATAGTACATCCAAGGCCCAGTTTTTGATCTTGAAGAAGACCTTGATGGGGAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP zf-CCCH

Protein Analysis

109

Amino Acids

12.42

Weight (kDa)

9.12

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025059)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283061
rosa_roxburghii Rroxscaffold_5G00359650
rosa_samantha Rh6DG259300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 171, 184
AfaI GTAC 2 cut(s) 121, 277
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 2 cut(s) 236, 304
AluBI AGCT 3 cut(s) 28, 125, 262
AluI AGCT 3 cut(s) 28, 125, 262
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 171, 184
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 214, 286
AsuC2I CCSGG 2 cut(s) 185, 186
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 214
BamHI GGATCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 314
BccI CCATC 1 cut(s) 310
BciVI GTATCC 1 cut(s) 182
BcnI CCSGG 2 cut(s) 185, 186
BcoDI GTCTC 1 cut(s) 106
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 185, 186
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 214, 286
BmiI GGNNCC 2 cut(s) 178, 216
BmrFI CCNGG 2 cut(s) 185, 186
BmrI ACTGGG 2 cut(s) 244, 283
BmuI ACTGGG 2 cut(s) 244, 283
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 185, 186
BsaJI CCNNGG 3 cut(s) 136, 184, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse1I ACTGG 3 cut(s) 175, 250, 289
BseDI CCNNGG 3 cut(s) 136, 184, 282
BseGI GGATG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 3 cut(s) 175, 250, 289
BshFI GGCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 119
Bsp143I GATC 3 cut(s) 98, 176, 297
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 178, 216
BspPI GGATC 2 cut(s) 171, 184
BsrGI TGTACA 1 cut(s) 119
BsrI ACTGG 3 cut(s) 175, 250, 289
BssECI CCNNGG 3 cut(s) 136, 184, 282
BssMI GATC 3 cut(s) 98, 176, 297
BssT1I CCWWGG 2 cut(s) 136, 282
Bst4CI ACNGT 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 278
BstKTI GATC 3 cut(s) 101, 179, 300
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 98, 176, 297
BstSCI CCNGG 2 cut(s) 183, 184
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 214, 286
Cfr9I CCCGGG 1 cut(s) 184
Csp6I GTAC 2 cut(s) 120, 276
CviAII CATG 2 cut(s) 131, 245
CviJI RGCY 4 cut(s) 28, 125, 262, 287
CviKI_1 RGCY 4 cut(s) 28, 125, 262, 287
CviQI GTAC 2 cut(s) 120, 276
DdeI CTNAG 1 cut(s) 52
DpnI GATC 3 cut(s) 100, 178, 299
DpnII GATC 3 cut(s) 98, 176, 297
Eco130I CCWWGG 2 cut(s) 136, 282
Eco47I GGWCC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 136, 282
ErhI CCWWGG 2 cut(s) 136, 282
FaeI CATG 2 cut(s) 134, 248
FaiI YATR 4 cut(s) 44, 80, 132, 246
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FatI CATG 2 cut(s) 130, 244
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 185
Hin1II CATG 2 cut(s) 134, 248
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 3 cut(s) 55, 181, 199
Hpy188III TCNNGA 2 cut(s) 233, 301
Hpy8I GTNNAC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 2 cut(s) 134, 248
Kzo9I GATC 3 cut(s) 98, 176, 297
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 4 cut(s) 156, 198, 263, 302
MaeIII GTNAC 1 cut(s) 221
MalI GATC 3 cut(s) 100, 178, 299
MboI GATC 3 cut(s) 98, 176, 297
MboII GAAGA 3 cut(s) 248, 316, 319
MfeI CAATTG 1 cut(s) 92
MflI RGATCY 1 cut(s) 176
MluCI AATT 3 cut(s) 45, 92, 193
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 1 cut(s) 167
MseI TTAA 2 cut(s) 161, 210
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 185, 186
MunI CAATTG 1 cut(s) 92
NciI CCSGG 2 cut(s) 185, 186
NdeII GATC 3 cut(s) 98, 176, 297
NlaIII CATG 2 cut(s) 134, 248
NlaIV GGNNCC 2 cut(s) 178, 216
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 178, 216
PspPI GGNCC 2 cut(s) 214, 286
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 2 cut(s) 121, 277
RsaNI GTAC 2 cut(s) 120, 276
SaqAI TTAA 2 cut(s) 161, 210
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 3 cut(s) 98, 176, 297
Sau96I GGNCC 2 cut(s) 214, 286
ScrFI CCNGG 2 cut(s) 185, 186
SetI ASST 5 cut(s) 30, 91, 127, 264, 314
SinI GGWCC 1 cut(s) 214
SmaI CCCGGG 1 cut(s) 186
Sse9I AATT 3 cut(s) 45, 92, 193
StyD4I CCNGG 2 cut(s) 183, 184
StyI CCWWGG 2 cut(s) 136, 282
TaaI ACNGT 1 cut(s) 117
TasI AATT 3 cut(s) 45, 92, 193
TatI WGTACW 2 cut(s) 119, 275
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 2 cut(s) 161, 210
Tru9I TTAA 2 cut(s) 161, 210
TscAI CASTG 1 cut(s) 122
TseI GCWGC 1 cut(s) 6
TspMI CCCGGG 1 cut(s) 184
TspRI CASTG 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 214
XmaI CCCGGG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.