Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0025059

Physical Location & Seq

Genomic Coordinates Reverse (-)

39808362 .. 39809345

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAAGTGGATACTCCGTCAGTGTGAGGAGCCTCGATCTAAAGAAAAAGTGAACAATATTGTTGATGCTGGAACGAGTGCGCCAATGGCTTTTCTAATTGATTTGGGGAATTACCGTCGATCACGACCTTGCTCGAAACCGGAGGAGCCGGGATACAATTCCGATGATTCAGTTAAGGACCCAAGTTACAGCACTCTTGAAGAAATCCATGCTCAGTTCTCAAAGCTCTCTATCAATTGTACATCCAAGGCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

7.7

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025059)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0283061
rosa_roxburghii	Rroxscaffold_5G00359650
rosa_samantha	Rh6DG259300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
AoxI	GGCC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	178, 250
AsuC2I	CCSGG	2 cut(s)	150, 253
AvaII	GGWCC	1 cut(s)	178
BciVI	GTATCC	2 cut(s)	3, 146
BcnI	CCSGG	2 cut(s)	150, 253
BfuI	GTATCC	2 cut(s)	3, 146
Bme1390I	CCNGG	2 cut(s)	150, 253
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	178, 250
BmiI	GGNNCC	3 cut(s)	30, 147, 180
BmrFI	CCNGG	2 cut(s)	150, 253
BmsI	GCATC	1 cut(s)	55
BpuMI	CCSGG	2 cut(s)	150, 253
BsaJI	CCNNGG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	41, 158
BshFI	GGCC	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	140, 149, 253
BslI	CCNNNNNNNGG	1 cut(s)	252
BsnI	GGCC	1 cut(s)	251
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	35, 119
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	30, 147, 180
BsrGI	TGTACA	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	35, 119
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	38, 122
BstMBI	GATC	2 cut(s)	35, 119
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	148, 251
BsuI	GTATCC	2 cut(s)	3, 146
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	26
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	178, 250
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	5 cut(s)	31, 89, 148, 226, 251
CviKI_1	RGCY	5 cut(s)	31, 89, 148, 226, 251
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	37, 121
DpnII	GATC	2 cut(s)	35, 119
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	212
FaiI	YATR	1 cut(s)	210
FatI	CATG	1 cut(s)	208
FokI	GGATG	1 cut(s)	229
GlaI	GCGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	3 cut(s)	140, 149, 253
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	3 cut(s)	140, 149, 253
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	123, 197
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	35, 119
LmnI	GCTCC	2 cut(s)	28, 145
LpnPI	CCDG	3 cut(s)	54, 153, 162
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	37, 121
MboI	GATC	2 cut(s)	35, 119
MboII	GAAGA	1 cut(s)	212
MfeI	CAATTG	1 cut(s)	235
MluCI	AATT	4 cut(s)	96, 109, 157, 235
MnlI	CCTC	3 cut(s)	19, 42, 136
MseI	TTAA	1 cut(s)	174
MspI	CCGG	3 cut(s)	140, 149, 253
MspR9I	CCNGG	2 cut(s)	150, 253
MunI	CAATTG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	2 cut(s)	150, 253
NdeII	GATC	2 cut(s)	35, 119
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	3 cut(s)	30, 147, 180
PfeI	GAWTC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	30, 147, 180
PspPI	GGNCC	2 cut(s)	178, 250
PspPPI	RGGWCCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	35, 119
Sau96I	GGNCC	2 cut(s)	178, 250
ScrFI	CCNGG	2 cut(s)	150, 253
SetI	ASST	2 cut(s)	130, 228
SfaNI	GCATC	1 cut(s)	55
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	4 cut(s)	96, 109, 157, 235
SspI	AATATT	1 cut(s)	58
StyD4I	CCNGG	2 cut(s)	148, 251
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	34, 118, 134
TasI	AATT	4 cut(s)	96, 109, 157, 235
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.