RchiOBHm_Chr6g0283931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030373
Physical Location & Seq
Reverse (-)
47204361 .. 47205197
837 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25461

Sequence Viewer

Length: 360 bp
ATGGATTTTGATTCGGAAATTGGTTGTTGCGAGCTTCCAGTCAGGCATTTTGTGTTGAAGTACATCTCATTGTCAACTTGTTTGGAGATTCTTGGTAGGGTTTGGAGGCCATCACCAGGAAGTTTCGAGGGCTTGCTAGAATTCTCTAAGTCGTCAGATGCTTGTCTTGAACCAGAACTCAGTCAATGGAAGGTGCAGGCCCTCACTGCTTTAAAAGTTGGGGAAGTAGAGCTCCGATCAATGTTTTTAAAGGGTGGTGGTATCCTTACTCTGGCAAAGATATATCAGTTGTTAGCTCGGAAGTTATTTGGGAAGGTGTTCTTAGAAGCTTCCAATTATCATGAATGCCTTACTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

6.11

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030373)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283931
rosa_samantha Rh6AG271700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 116, 271
AgsI TTSAA 2 cut(s) 58, 170
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 4 cut(s) 34, 232, 296, 329
AluI AGCT 4 cut(s) 34, 232, 296, 329
Alw21I GWGCWC 1 cut(s) 234
AoxI GGCC 2 cut(s) 107, 198
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 105
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 272
BfaI CTAG 1 cut(s) 137
BfuI GTATCC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 271
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 116, 271
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 2 cut(s) 109, 200
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 116, 271
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 2 cut(s) 109, 200
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 236
BspANI GGCC 2 cut(s) 109, 200
BspCNI CTCAG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 340
BsrI ACTGG 1 cut(s) 38
BssMI GATC 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 32, 134, 198
BstDEI CTNAG 3 cut(s) 147, 179, 322
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 2 cut(s) 109, 200
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 32, 134, 198
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 341
CviJI RGCY 7 cut(s) 34, 109, 132, 200, 232, 296, 329
CviKI_1 RGCY 7 cut(s) 34, 109, 132, 200, 232, 296, 329
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 3 cut(s) 147, 179, 322
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
DraI TTTAAA 2 cut(s) 213, 249
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 283, 342
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 1 cut(s) 340
FriOI GRGCYC 1 cut(s) 234
FspBI CTAG 1 cut(s) 137
HaeIII GGCC 2 cut(s) 109, 200
Hin1II CATG 1 cut(s) 344
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 2 cut(s) 11, 88
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 4 cut(s) 16, 157, 236, 300
Hpy188III TCNNGA 2 cut(s) 167, 341
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 2 cut(s) 184, 307
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 3 cut(s) 147, 179, 322
Hsp92II CATG 1 cut(s) 344
Kzo9I GATC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 7 cut(s) 28, 51, 102, 129, 182, 186, 257
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 137
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 18, 140, 334
MnlI CCTC 3 cut(s) 99, 121, 212
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 3 cut(s) 212, 248, 358
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 236
NlaIII CATG 1 cut(s) 344
PagI TCATGA 1 cut(s) 340
PctI GAATGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 11, 88
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 3 cut(s) 212, 248, 358
Sau3AI GATC 1 cut(s) 236
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 234
SetI ASST 6 cut(s) 36, 195, 234, 298, 318, 331
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 3 cut(s) 18, 140, 334
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 115
TaqI TCGA 1 cut(s) 126
TasI AATT 3 cut(s) 18, 140, 334
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 11, 88
Tru1I TTAA 3 cut(s) 212, 248, 358
Tru9I TTAA 3 cut(s) 212, 248, 358
TscAI CASTG 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 357
TspRI CASTG 1 cut(s) 211
XapI RAATTY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.