Rh6AG271700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0030373
Physical Location & Seq
Reverse (-)
46598420 .. 46599497
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG271700.1

Sequence Viewer

Length: 267 bp
ATGAGGGGTTGGAGGCCATCACCAAGAAGTTTCGAGGGCTTGCTAGAATTCTCTGAGCCGTCAGATGCTTGTCTTGAACTAGGACTCAGTCAATGGAAGGTGCAAGCCCTCACTGCTTTAAAAGTTGGGGAAGTAGAGCTCCGATCGATGTTTTTAAAGGGTGGTGGTATCCTTACTCTGGCAAAGATATATCAGTTGTTAGCTCGGAAGTTATTTGGGAAGGTGTTCTTAGAAGCTGCCAATTATCATGAATGCCTTACTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.86

Weight (kDa)

8.68

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030373)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283931
rosa_samantha Rh6AG271700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 3 cut(s) 139, 203, 236
AluI AGCT 3 cut(s) 139, 203, 236
Alw21I GWGCWC 1 cut(s) 141
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 12
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 43
BciVI GTATCC 1 cut(s) 179
BfaI CTAG 2 cut(s) 44, 80
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmsI GCATC 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseCI ATCGAT 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 45, 100
BseXI GCAGC 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 146
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 178
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 143
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 46, 99
BspDI ATCGAT 1 cut(s) 146
BspHI TCATGA 1 cut(s) 247
BssMI GATC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 41, 105
BstDEI CTNAG 3 cut(s) 54, 86, 229
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 146
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 16
BsuTUI ATCGAT 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 41, 105
CciI TCATGA 1 cut(s) 247
ClaI ATCGAT 1 cut(s) 146
CviAII CATG 1 cut(s) 248
CviJI RGCY 7 cut(s) 16, 39, 58, 107, 139, 203, 236
CviKI_1 RGCY 7 cut(s) 16, 39, 58, 107, 139, 203, 236
DdeI CTNAG 3 cut(s) 54, 86, 229
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DraI TTTAAA 2 cut(s) 120, 156
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 1 cut(s) 251
FaiI YATR 2 cut(s) 190, 249
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 2 cut(s) 44, 80
GluI GCNGC 1 cut(s) 237
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 1 cut(s) 251
HinfI GANTC 1 cut(s) 84
HphI GGTGA 1 cut(s) 12
Hpy188I TCNGA 4 cut(s) 55, 64, 143, 207
Hpy188III TCNNGA 2 cut(s) 74, 248
HpyAV CCTTC 2 cut(s) 91, 214
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 3 cut(s) 54, 86, 229
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 1 cut(s) 164
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 55
MaeI CTAG 2 cut(s) 44, 80
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 2 cut(s) 47, 241
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 3 cut(s) 6, 28, 119
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 3 cut(s) 119, 155, 265
Mva1269I GAATGC 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 1 cut(s) 143
NlaIII CATG 1 cut(s) 251
PagI TCATGA 1 cut(s) 247
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 224
PflFI GACNNNGTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 238
Ple19I CGATCG 1 cut(s) 146
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 141
PsyI GACNNNGTC 1 cut(s) 87
PvuI CGATCG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 119, 155, 265
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 143
SchI GAGTC 1 cut(s) 78
SduI GDGCHC 1 cut(s) 141
SetI ASST 5 cut(s) 102, 141, 205, 225, 238
SfaNI GCATC 1 cut(s) 55
Sse9I AATT 2 cut(s) 47, 241
SspMI CTAG 2 cut(s) 44, 80
SstI GAGCTC 1 cut(s) 141
TaqI TCGA 2 cut(s) 33, 146
TasI AATT 2 cut(s) 47, 241
Tru1I TTAA 3 cut(s) 119, 155, 265
Tru9I TTAA 3 cut(s) 119, 155, 265
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 1 cut(s) 118
Tth111I GACNNNGTC 1 cut(s) 87
XapI RAATTY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 2 cut(s) 44, 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.