RchiOBHm_Chr6g0286351
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030415
Physical Location & Seq
Forward (+)
49727416 .. 49728371
956 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25683

Sequence Viewer

Length: 363 bp
ATGTCAGTGGGATCATCAAACCTTGCAGGTGAAGAAACTCATTTAGTCCTACTTTTACTTATCAGAGTTGGTAATGACACTGCTTTTGGGTCCTCCAAGTTCGGGAAGACCACGCTCTTGTTAGCTTTGGCTGGAGAGCTTGGTAAGGATCTTAAGGTTTCAGGAAATGTGACTTACAATGGTCATGGCATGCACGGATTTGTACCGCAGAGAAGTGTTGCATATATCAGTCAACATGATGTTCATATTGGAGAAATGACAGTTGGAGAAACCTTGGCTTTTTCGGCAAGATGCCAAGGGGCCGCAACTCTTTATATGATTTTGGGTTTGGATGGCTGTGCAGATACCTTGTGTGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

120

Amino Acids

12.56

Weight (kDa)

5.61

Isoelectric Point (pI)

25.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 29 - 103 9e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0030415)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0286351
rosa_roxburghii Rroxscaffold_7G00182420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AciI CCGC 2 cut(s) 206, 303
AclWI GGATC 2 cut(s) 19, 156
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 102
AflII CTTAAG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 3 cut(s) 125, 139, 360
AluI AGCT 3 cut(s) 125, 139, 360
AlwI GGATC 2 cut(s) 19, 156
AoxI GGCC 1 cut(s) 300
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspS9I GGNCC 2 cut(s) 90, 300
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 113
BccI CCATC 1 cut(s) 326
BfrI CTTAAG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 2 cut(s) 90, 300
BmiI GGNNCC 2 cut(s) 91, 301
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 273, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 273, 295
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 102
BsnI GGCC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 11, 148
BspACI CCGC 2 cut(s) 206, 303
BspANI GGCC 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 91, 301
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 2 cut(s) 19, 156
BspTI CTTAAG 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 273, 295
BssMI GATC 2 cut(s) 11, 148
BssT1I CCWWGG 2 cut(s) 273, 295
Bst4CI ACNGT 1 cut(s) 262
BstAFI CTTAAG 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 191
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 2 cut(s) 14, 151
BstMBI GATC 2 cut(s) 11, 148
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 1 cut(s) 302
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 12, 78
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 90, 300
Csp6I GTAC 1 cut(s) 203
CviAII CATG 3 cut(s) 185, 190, 236
CviJI RGCY 7 cut(s) 125, 131, 139, 278, 302, 336, 360
CviKI_1 RGCY 7 cut(s) 125, 131, 139, 278, 302, 336, 360
CviQI GTAC 1 cut(s) 203
DpnI GATC 2 cut(s) 13, 150
DpnII GATC 2 cut(s) 11, 148
Eco130I CCWWGG 2 cut(s) 273, 295
Eco47I GGWCC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 273, 295
ErhI CCWWGG 2 cut(s) 273, 295
FaeI CATG 3 cut(s) 188, 193, 239
FaiI YATR 8 cut(s) 186, 191, 223, 225, 237, 246, 315, 317
FatI CATG 3 cut(s) 184, 189, 235
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 3 cut(s) 188, 193, 239
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 2 cut(s) 103, 162
Hpy8I GTNNAC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 4 cut(s) 26, 193, 221, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
Hsp92II CATG 3 cut(s) 188, 193, 239
Kzo9I GATC 2 cut(s) 11, 148
LpnPI CCDG 3 cut(s) 12, 117, 147
LweI GCATC 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 13, 150
MboI GATC 2 cut(s) 11, 148
MboII GAAGA 2 cut(s) 44, 118
MflI RGATCY 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 1 cut(s) 103
MseI TTAA 1 cut(s) 153
MspCI CTTAAG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 2 cut(s) 11, 148
NlaIII CATG 3 cut(s) 188, 193, 239
NlaIV GGNNCC 2 cut(s) 91, 301
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 193
PaeI GCATGC 1 cut(s) 193
PaqCI CACCTGC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 91, 301
PspPI GGNCC 2 cut(s) 90, 300
PspPPI RGGWCCY 1 cut(s) 90
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 11, 148
Sau96I GGNCC 2 cut(s) 90, 300
SetI ASST 8 cut(s) 24, 31, 127, 141, 159, 275, 350, 362
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SphI GCATGC 1 cut(s) 193
SsiI CCGC 2 cut(s) 206, 303
StyI CCWWGG 2 cut(s) 273, 295
TaaI ACNGT 1 cut(s) 262
TauI GCSGC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 12, 85
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 2 cut(s) 12, 85
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 90
XceI RCATGY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.